Rroxscaffold_5G00334430

Perakine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000149
Physical Location & Seq
Reverse (-)
1730911 .. 1733793
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00334430.1

Sequence Viewer

Length: 822 bp
ATGGAGGACAAATCTCATATGCAAATCCCAAAGGTTAAACTGGGTAATCAGGGCTTGGAGGTTTCTAGATTGGGTTTTGGATGTGGGGGACTGTCTGGAATATACAATGCTCCTCTCTCTCATGAAGCTGGATGTTCCGTGATAAAGGAAGCATTTGATAAGGGCATTACCTTCTATGACACTTCGGATCTTTATGGTCACAATCATGATAATGAAATCTTGGTTGGCAAGGCTTTGAAACAGCTTCCTCGAGAAAAAGTTCAACTGGCTACAAAATTTGGCATTGTCAGGTTGGATGGCTTTCAGTTTGCAATTAATGGTACCCCGGAATATGTAAGAGCATGCTGCGAAGCTAGTCTAAAGCGGCTGGATGTCGACTATATTGATCTGTACTACCAACACCGTGTTGATGTTTCAGTGCCAATTGAGGATACTATTGGGGAGCTTAAGAAGCTGGTACATGAAGGAAAGATAAGATACATTGGTCTATCGGAAGCTAGTATAGACACCATAATGAGAGCTCATGCTGTTCATCCCATCACTGCTGTACAAATGGAGTATTCTCTGTGGACTCGAGAGATTGAAGATGAAATAATTCCACTTTGCCGGAAGCTTGGAATTGGTATAGTGTCATATAGTCCACTCGGTCGTGGTTTCTTCGGTGGGAAGGCAGTTCTGGAGAGCTTGCCTGCAGAAAGTTTGTTGTCTATTCATCCAAGGTTCAATGGCGAGAATTTGGAAAATAACAAACTTTTCTATAACAAGCTTGCCAATCTTGCTACAAAGCATTCATGCAATGCTCCTCAATTAGCTCTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

273

Amino Acids

30.29

Weight (kDa)

6.37

Isoelectric Point (pI)

25.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 273 5.2e-56 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 320
AccI GTMKAC 1 cut(s) 375
AciI CCGC 1 cut(s) 364
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 2 cut(s) 275, 733
AfaI GTAC 4 cut(s) 322, 392, 459, 549
AflII CTTAAG 1 cut(s) 446
AgsI TTSAA 4 cut(s) 238, 263, 584, 724
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
Alw21I GWGCWC 1 cut(s) 523
AlwI GGATC 1 cut(s) 195
Ama87I CYCGRG 2 cut(s) 249, 573
ApeKI GCWGC 1 cut(s) 345
ApoI RAATTY 2 cut(s) 275, 733
AseI ATTAAT 1 cut(s) 315
Asp700I GAANNNNTTC 2 cut(s) 258, 594
Asp718I GGTACC 1 cut(s) 320
AsuC2I CCSGG 1 cut(s) 326
AvaI CYCGRG 2 cut(s) 249, 573
BaeI ACNNNNGTAYC 2 cut(s) 469, 502
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 523
Bbv12I GWGCWC 1 cut(s) 523
BbvI GCAGC 1 cut(s) 332
BccI CCATC 2 cut(s) 290, 545
BciVI GTATCC 1 cut(s) 424
BcnI CCSGG 1 cut(s) 326
BfaI CTAG 3 cut(s) 66, 354, 498
BfmI CTRYAG 1 cut(s) 690
BfrI CTTAAG 1 cut(s) 446
BfuI GTATCC 1 cut(s) 424
BisI GCNGC 2 cut(s) 346, 365
BlsI GCNGC 2 cut(s) 347, 366
Bme1390I CCNGG 1 cut(s) 326
BmeT110I CYCGRG 2 cut(s) 249, 573
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 326
BmrI ACTGGG 1 cut(s) 50
BmuI ACTGGG 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 698
BpuMI CCSGG 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 324, 716
Bse1I ACTGG 2 cut(s) 45, 270
Bse3DI GCAATG 1 cut(s) 802
BseDI CCNNGG 2 cut(s) 324, 716
BseGI GGATG 6 cut(s) 86, 137, 301, 376, 532, 712
BseMI GCAATG 1 cut(s) 802
BseNI ACTGG 2 cut(s) 45, 270
BseRI GAGGAG 2 cut(s) 102, 792
BseXI GCAGC 1 cut(s) 332
Bsh1285I CGRYCG 1 cut(s) 649
BshNI GGYRCC 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 649
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 2 cut(s) 249, 573
BsiSI CCGG 2 cut(s) 326, 607
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 787
BsoBI CYCGRG 2 cut(s) 249, 573
Bsp1286I GDGCHC 1 cut(s) 523
Bsp1407I TGTACA 1 cut(s) 547
Bsp143I GATC 2 cut(s) 187, 385
BspACI CCGC 1 cut(s) 364
BspHI TCATGA 2 cut(s) 121, 205
BspLI GGNNCC 1 cut(s) 322
BspMAI CTGCAG 1 cut(s) 694
BspPI GGATC 1 cut(s) 195
BspT107I GGYRCC 1 cut(s) 320
BspTI CTTAAG 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 802
BsrGI TGTACA 1 cut(s) 547
BsrI ACTGG 2 cut(s) 45, 270
BssECI CCNNGG 2 cut(s) 324, 716
BssMI GATC 2 cut(s) 187, 385
BssT1I CCWWGG 1 cut(s) 716
Bst4CI ACNGT 2 cut(s) 93, 404
BstAFI CTTAAG 1 cut(s) 446
BstAUI TGTACA 1 cut(s) 547
BstC8I GCNNGC 4 cut(s) 343, 686, 690, 768
BstF5I GGATG 6 cut(s) 86, 137, 301, 376, 532, 712
BstKTI GATC 2 cut(s) 190, 388
BstMBI GATC 2 cut(s) 187, 385
BstMCI CGRYCG 1 cut(s) 649
BstMWI GCNNNNNNNGC 2 cut(s) 451, 776
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 690
BstV1I GCAGC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuI GTATCC 1 cut(s) 424
BtsCI GGATG 6 cut(s) 86, 137, 301, 376, 532, 712
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 2 cut(s) 423, 540
Cac8I GCNNGC 4 cut(s) 343, 686, 690, 768
CciI TCATGA 2 cut(s) 121, 205
Csp6I GTAC 4 cut(s) 321, 391, 458, 548
CviAII CATG 6 cut(s) 122, 206, 342, 461, 524, 792
CviQI GTAC 4 cut(s) 321, 391, 458, 548
DpnI GATC 2 cut(s) 189, 387
DpnII GATC 2 cut(s) 187, 385
Ecl136II GAGCTC 1 cut(s) 521
Eco130I CCWWGG 1 cut(s) 716
Eco24I GRGCYC 1 cut(s) 523
Eco53kI GAGCTC 1 cut(s) 521
Eco88I CYCGRG 2 cut(s) 249, 573
EcoICRI GAGCTC 1 cut(s) 521
EcoT14I CCWWGG 1 cut(s) 716
EcoT38I GRGCYC 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 716
FaeI CATG 6 cut(s) 125, 209, 345, 464, 527, 795
FaqI GGGAC 1 cut(s) 102
FatI CATG 6 cut(s) 121, 205, 341, 460, 523, 791
FauNDI CATATG 1 cut(s) 18
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 2 cut(s) 346, 365
FokI GGATG 6 cut(s) 93, 144, 308, 383, 519, 699
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 2 cut(s) 346, 365
FspBI CTAG 3 cut(s) 66, 354, 498
GluI GCNGC 2 cut(s) 346, 365
GsuI CTGGAG 1 cut(s) 698
HapII CCGG 2 cut(s) 326, 607
Hin1II CATG 6 cut(s) 125, 209, 345, 464, 527, 795
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 2 cut(s) 611, 764
HinfI GANTC 1 cut(s) 571
HpaII CCGG 2 cut(s) 326, 607
Hpy166II GTNNAC 3 cut(s) 376, 570, 641
Hpy188I TCNGA 2 cut(s) 187, 493
Hpy188III TCNNGA 7 cut(s) 66, 96, 122, 206, 251, 575, 677
Hpy8I GTNNAC 3 cut(s) 376, 570, 641
HpyAV CCTTC 3 cut(s) 181, 458, 661
HpyCH4III ACNGT 2 cut(s) 93, 404
HpyCH4V TGCA 4 cut(s) 22, 311, 692, 795
HpyF10VI GCNNNNNNNGC 2 cut(s) 451, 776
Hsp92II CATG 6 cut(s) 125, 209, 345, 464, 527, 795
KpnI GGTACC 1 cut(s) 324
Kzo9I GATC 2 cut(s) 187, 385
LmnI GCTCC 3 cut(s) 115, 442, 805
Lsp1109I GCAGC 1 cut(s) 332
MaeI CTAG 3 cut(s) 66, 354, 498
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 189, 387
MboI GATC 2 cut(s) 187, 385
MboII GAAGA 2 cut(s) 596, 649
MfeI CAATTG 1 cut(s) 423
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 7 cut(s) 275, 312, 423, 594, 618, 733, 806
MlyI GAGTC 1 cut(s) 565
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 5 cut(s) 52, 123, 258, 421, 813
MroXI GAANNNNTTC 2 cut(s) 258, 594
MseI TTAA 3 cut(s) 36, 315, 447
MslI CAYNNNNRTG 3 cut(s) 204, 210, 512
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 2 cut(s) 326, 607
MspR9I CCNGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 423
Mva1269I GAATGC 1 cut(s) 787
MwoI GCNNNNNNNGC 2 cut(s) 451, 776
NciI CCSGG 1 cut(s) 326
NdeI CATATG 1 cut(s) 18
NdeII GATC 2 cut(s) 187, 385
NlaIII CATG 6 cut(s) 125, 209, 345, 464, 527, 795
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 197
NspI RCATGY 1 cut(s) 345
PaeI GCATGC 1 cut(s) 345
PaeR7I CTCGAG 2 cut(s) 249, 573
PagI TCATGA 2 cut(s) 121, 205
PctI GAATGC 1 cut(s) 787
PdmI GAANNNNTTC 2 cut(s) 258, 594
PkrI GCNGC 2 cut(s) 347, 366
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
PshBI ATTAAT 1 cut(s) 315
Psp124BI GAGCTC 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 322
PstI CTGCAG 1 cut(s) 694
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 4 cut(s) 322, 392, 459, 549
RsaNI GTAC 4 cut(s) 321, 391, 458, 548
RseI CAYNNNNRTG 3 cut(s) 204, 210, 512
SacI GAGCTC 1 cut(s) 523
SalI GTCGAC 1 cut(s) 374
SaqAI TTAA 3 cut(s) 36, 315, 447
SatI GCNGC 2 cut(s) 346, 365
Sau3AI GATC 2 cut(s) 187, 385
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 1 cut(s) 523
SfcI CTRYAG 1 cut(s) 690
Sfr274I CTCGAG 2 cut(s) 249, 573
SlaI CTCGAG 2 cut(s) 249, 573
SmiMI CAYNNNNRTG 3 cut(s) 204, 210, 512
SmlI CTYRAG 3 cut(s) 249, 446, 573
SmoI CTYRAG 3 cut(s) 249, 446, 573
SphI GCATGC 1 cut(s) 345
Sse9I AATT 7 cut(s) 275, 312, 423, 594, 618, 733, 806
SsiI CCGC 1 cut(s) 364
SspMI CTAG 3 cut(s) 66, 354, 498
SstI GAGCTC 1 cut(s) 523
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 1 cut(s) 716
TaaI ACNGT 2 cut(s) 93, 404
TaqI TCGA 3 cut(s) 250, 375, 574
TaqII GACCGA 1 cut(s) 635
TasI AATT 7 cut(s) 275, 312, 423, 594, 618, 733, 806
TatI WGTACW 2 cut(s) 390, 547
TauI GCSGC 1 cut(s) 367
Tru1I TTAA 3 cut(s) 36, 315, 447
Tru9I TTAA 3 cut(s) 36, 315, 447
TscAI CASTG 2 cut(s) 423, 547
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 345
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 7 cut(s) 138, 228, 477, 521, 603, 701, 780
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 2 cut(s) 423, 547
Vha464I CTTAAG 1 cut(s) 446
VspI ATTAAT 1 cut(s) 315
XapI RAATTY 2 cut(s) 275, 733
XbaI TCTAGA 1 cut(s) 65
XceI RCATGY 1 cut(s) 345
XhoI CTCGAG 2 cut(s) 249, 573
XmiI GTMKAC 1 cut(s) 375
XmnI GAANNNNTTC 2 cut(s) 258, 594
XspI CTAG 3 cut(s) 66, 354, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.