Rw3G002610

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000149
Physical Location & Seq
Forward (+)
2286516 .. 2289780
3265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002610.1

Sequence Viewer

Length: 843 bp
ATGACGTTGCATGTGTATATGACACCATTTGGGGAGGAAAGAGGAAGAGGAAGAAGAACAAGGATGGCTAAGGATACACTCCAAGTTCCAAGAGTGCAACTGGGAAGTGAGGGATTCGAGGTCTCCAAGCTTGGATTTGGGTGTACTGGGTTTACTGGAATCAACAATAGTGCTCCAGTCAGTGAAGAGCTTGCATTATCAATCATCAAGCATGCATTTGATAAAGGAATAACATTCTTTGATACATCAGATATTTGTGGACCACATACTAATGAAGTTTTGGTGGGAAAGGCATTAAAGCAGTTGCCTCGAGATGAAGTTCAGTTGGCCACAAAGTTTGGTATGGTAAGAATTGAGCCTAATCAAGTTATAGTTAATGGCACTCCGGAATATGCCCGCTCCTGTTGTGAAGCTAGTCTGAACCGCCTCGGTGTTGACTACATCGATCTTTACTATCAGCACCGGATAGACACATCAGTCCCAATAGAGGACACTATGGAAGAGCTAAAGAAGCTGGTGAATGAGGGGAAGATAAAGTATATTGGATTATCTGAAGCTAGTGCAGAAACAATAAGGAGGGCACATGCAGTTCATCCTATTACTGCTGTACAAATGGAGTGGAATATTTGGACTCGTGAAATTGAGGAAGAAATTGTCCCTCTTTGCAGGGAACTTGAAATTGGGATAGTGACATACAGCCCTCTTGGTCGTGGATTTTTTGCTGGCAAGGCAATGGTGGAAAGTTTGCCTGCAAATAGTTTTCTGGTAACTCTTTCTGTATCTCTCTCTCTATCTAGTTATTATGTGATAAAGAGCACTGTAAAGACAGCTGCAGTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

280

Amino Acids

31.08

Weight (kDa)

5.93

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 43 - 243 7.2e-56 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 476
AccBSI CCGCTC 1 cut(s) 399
AccIII TCCGGA 1 cut(s) 385
AciI CCGC 2 cut(s) 397, 424
AcoI YGGCCR 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 573
AfaI GTAC 2 cut(s) 145, 609
AfiI CCNNNNNNNGG 1 cut(s) 487
AgsI TTSAA 1 cut(s) 677
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AluBI AGCT 7 cut(s) 130, 190, 413, 505, 514, 557, 830
AluI AGCT 7 cut(s) 130, 190, 413, 505, 514, 557, 830
Alw21I GWGCWC 2 cut(s) 175, 818
Alw26I GTCTC 1 cut(s) 127
Ama87I CYCGRG 1 cut(s) 309
Aor13HI TCCGGA 1 cut(s) 385
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 1 cut(s) 830
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 529
AvaI CYCGRG 1 cut(s) 309
AvaII GGWCC 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 583
BalI TGGCCA 1 cut(s) 329
BauI CACGAG 1 cut(s) 633
Bbv12I GWGCWC 2 cut(s) 175, 818
BbvI GCAGC 1 cut(s) 817
BccI CCATC 1 cut(s) 58
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciVI GTATCC 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 3 cut(s) 414, 558, 795
BfmI CTRYAG 1 cut(s) 831
BfuI GTATCC 1 cut(s) 67
BisI GCNGC 1 cut(s) 831
BlsI GCNGC 1 cut(s) 832
Bme18I GGWCC 1 cut(s) 260
BmeT110I CYCGRG 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 260
BmrI ACTGGG 2 cut(s) 110, 156
BmuI ACTGGG 2 cut(s) 110, 156
BpmI CTGGAG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 427
BsaWI WCCGGW 2 cut(s) 385, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse1I ACTGG 4 cut(s) 105, 151, 160, 176
Bse3DI GCAATG 1 cut(s) 738
BseAI TCCGGA 1 cut(s) 385
BseCI ATCGAT 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 2 cut(s) 69, 592
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMI GCAATG 1 cut(s) 738
BseNI ACTGG 4 cut(s) 105, 151, 160, 176
BseSI GKGCMC 1 cut(s) 583
BseXI GCAGC 1 cut(s) 817
BsgI GTGCAG 1 cut(s) 582
BshFI GGCC 1 cut(s) 329
BshVI ATCGAT 1 cut(s) 444
BsiHKAI GWGCWC 2 cut(s) 175, 818
BsiHKCI CYCGRG 1 cut(s) 309
BsiSI CCGG 2 cut(s) 386, 463
BslFI GGGAC 2 cut(s) 464, 641
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 1 cut(s) 127
BsmFI GGGAC 2 cut(s) 464, 641
BsnI GGCC 1 cut(s) 329
Bso31I GGTCTC 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 309
Bsp1286I GDGCHC 3 cut(s) 175, 583, 818
Bsp13I TCCGGA 1 cut(s) 385
Bsp1407I TGTACA 1 cut(s) 607
Bsp143I GATC 1 cut(s) 445
BspACI CCGC 2 cut(s) 397, 424
BspANI GGCC 1 cut(s) 329
BspDI ATCGAT 1 cut(s) 444
BspEI TCCGGA 1 cut(s) 385
BspMAI CTGCAG 1 cut(s) 835
BspQI GCTCTTC 2 cut(s) 180, 495
BspTNI GGTCTC 1 cut(s) 127
BsrBI CCGCTC 1 cut(s) 399
BsrDI GCAATG 1 cut(s) 738
BsrGI TGTACA 1 cut(s) 607
BsrI ACTGG 4 cut(s) 105, 151, 160, 176
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 1 cut(s) 445
BssSI CACGAG 1 cut(s) 633
Bst2BI CACGAG 1 cut(s) 633
Bst4CI ACNGT 1 cut(s) 820
Bst6I CTCTTC 3 cut(s) 40, 180, 495
BstAUI TGTACA 1 cut(s) 607
BstC8I GCNNGC 5 cut(s) 192, 213, 397, 724, 750
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 69, 592
BstKTI GATC 1 cut(s) 448
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 2 cut(s) 511, 728
BstNSI RCATGY 3 cut(s) 14, 215, 587
BstSFI CTRYAG 1 cut(s) 831
BstSLI GKGCMC 1 cut(s) 583
BstV1I GCAGC 1 cut(s) 817
Bsu15I ATCGAT 1 cut(s) 444
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 329
BsuTUI ATCGAT 1 cut(s) 444
BtsCI GGATG 2 cut(s) 69, 592
BtsIMutI CAGTG 2 cut(s) 187, 816
Cac8I GCNNGC 5 cut(s) 192, 213, 397, 724, 750
Cfr13I GGNCC 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 444
Csp6I GTAC 2 cut(s) 144, 608
CspCI CAANNNNNGTGG 4 cut(s) 319, 354, 599, 634
CviAII CATG 3 cut(s) 11, 212, 584
CviQI GTAC 2 cut(s) 144, 608
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
DrdI GACNNNNNNGTC 1 cut(s) 476
DseDI GACNNNNNNGTC 1 cut(s) 476
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 3 cut(s) 40, 180, 495
EarI CTCTTC 3 cut(s) 40, 180, 495
Eco31I GGTCTC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 573
Eco88I CYCGRG 1 cut(s) 309
EcoT22I ATGCAT 1 cut(s) 217
FaeI CATG 3 cut(s) 14, 215, 587
FaqI GGGAC 2 cut(s) 464, 641
FatI CATG 3 cut(s) 10, 211, 583
FauI CCCGC 1 cut(s) 404
Fnu4HI GCNGC 1 cut(s) 831
FokI GGATG 2 cut(s) 76, 579
Fsp4HI GCNGC 1 cut(s) 831
FspBI CTAG 3 cut(s) 414, 558, 795
GluI GCNGC 1 cut(s) 831
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 329
HapII CCGG 2 cut(s) 386, 463
Hin1II CATG 3 cut(s) 14, 215, 587
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 114, 159, 631
HpaII CCGG 2 cut(s) 386, 463
HphI GGTGA 1 cut(s) 529
Hpy166II GTNNAC 4 cut(s) 144, 153, 260, 436
Hpy188I TCNGA 3 cut(s) 250, 420, 553
Hpy188III TCNNGA 3 cut(s) 311, 386, 635
Hpy8I GTNNAC 4 cut(s) 144, 153, 260, 436
HpyCH4III ACNGT 1 cut(s) 820
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 9 cut(s) 10, 97, 194, 215, 563, 587, 666, 752, 833
HpyF10VI GCNNNNNNNGC 2 cut(s) 511, 728
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 5
Hsp92II CATG 3 cut(s) 14, 215, 587
Kpn2I TCCGGA 1 cut(s) 385
Kzo9I GATC 1 cut(s) 445
LguI GCTCTTC 2 cut(s) 180, 495
LmnI GCTCC 2 cut(s) 178, 404
Lsp1109I GCAGC 1 cut(s) 817
MaeI CTAG 3 cut(s) 414, 558, 795
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 2 cut(s) 688, 766
MalI GATC 1 cut(s) 447
MbiI CCGCTC 1 cut(s) 399
MboI GATC 1 cut(s) 445
MboII GAAGA 7 cut(s) 57, 63, 66, 197, 512, 541, 659
MhlI GDGCHC 3 cut(s) 175, 583, 818
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 4 cut(s) 351, 639, 651, 678
MluNI TGGCCA 1 cut(s) 329
MlyI GAGTC 1 cut(s) 625
Mox20I TGGCCA 1 cut(s) 329
Mph1103I ATGCAT 1 cut(s) 217
MroI TCCGGA 1 cut(s) 385
MscI TGGCCA 1 cut(s) 329
MseI TTAA 3 cut(s) 296, 375, 841
MslI CAYNNNNRTG 1 cut(s) 270
Msp20I TGGCCA 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 2 cut(s) 386, 463
MwoI GCNNNNNNNGC 2 cut(s) 511, 728
NdeII GATC 1 cut(s) 445
NlaIII CATG 3 cut(s) 14, 215, 587
NmuCI GTSAC 1 cut(s) 688
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 3 cut(s) 14, 215, 587
PaeI GCATGC 1 cut(s) 215
PaeR7I CTCGAG 1 cut(s) 309
PciSI GCTCTTC 2 cut(s) 180, 495
PfeI GAWTC 2 cut(s) 114, 159
PkrI GCNGC 1 cut(s) 832
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PspPI GGNCC 1 cut(s) 260
PstI CTGCAG 1 cut(s) 835
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 2 cut(s) 145, 609
RsaNI GTAC 2 cut(s) 144, 608
RseI CAYNNNNRTG 1 cut(s) 270
SapI GCTCTTC 2 cut(s) 180, 495
SaqAI TTAA 3 cut(s) 296, 375, 841
SatI GCNGC 1 cut(s) 831
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 1 cut(s) 625
SduI GDGCHC 3 cut(s) 175, 583, 818
SetI ASST 9 cut(s) 8, 123, 132, 192, 415, 507, 516, 559, 832
SfcI CTRYAG 1 cut(s) 831
Sfr274I CTCGAG 1 cut(s) 309
SinI GGWCC 1 cut(s) 260
SlaI CTCGAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
SphI GCATGC 1 cut(s) 215
Sse9I AATT 4 cut(s) 351, 639, 651, 678
SsiI CCGC 2 cut(s) 397, 424
SspI AATATT 1 cut(s) 625
SspMI CTAG 3 cut(s) 414, 558, 795
TaaI ACNGT 1 cut(s) 820
TaiI ACGT 1 cut(s) 8
TaqI TCGA 3 cut(s) 117, 310, 444
TasI AATT 4 cut(s) 351, 639, 651, 678
TatI WGTACW 2 cut(s) 143, 607
TfiI GAWTC 2 cut(s) 114, 159
Tru1I TTAA 3 cut(s) 296, 375, 841
Tru9I TTAA 3 cut(s) 296, 375, 841
TscAI CASTG 2 cut(s) 187, 823
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 1 cut(s) 830
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 3 cut(s) 288, 330, 581
TspRI CASTG 2 cut(s) 187, 823
VpaK11BI GGWCC 1 cut(s) 260
XceI RCATGY 3 cut(s) 14, 215, 587
XhoI CTCGAG 1 cut(s) 309
XspI CTAG 3 cut(s) 414, 558, 795
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.