Rw3G002640

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000149
Physical Location & Seq
Forward (+)
2304013 .. 2306354
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002640.1

Sequence Viewer

Length: 1047 bp
ATGGCTGAGGAGAAGGGAATACAGATTCCAAAAGTTAAACTTGGAACTCAGGGATTTGAGGTCTCAAAATTGGGGTTTGGATGCATGGGTCTCACTGGTGTCTACAACTCTCCTGTTTCTGATGAGGATGGAATCTCAATAATAATAGATGCCTTCAATAAAGGAATCACTTTCTTTGACACAGCTGATGCATATGGACCTCATACAAATGAAGTTCTTATTGGGAAGGCATTGAAGCAATTGCCAAGAGAAAAAATTCAATTAGCCACAAAGTTTGGTATTGCTGGAATTATGCATCCTCCTAGTATTAAAATCACAGGTACTCCGGAATATGTCCGGTCTTGCTGTGAGGCTAGCTTGAAGCGTCTTGATGTGGACTACATTGATCTGTATTATCAACATCGGGTGGACACTACGGTGCCTATAGAGGAAACTATGGGTGAGCTGAAGAAACTTGTGGAAGAAGGAAAGATAAAGTACATTGGCTTATCTGAAGCCAGTCCGGACACAATAAGAAGGGCACACGCAGTTCATCCCATAACCGCTCTACAAATGGAGTGGTCACTCTGGACTCGTGATATTGAGGAAGAGATTATTCCACTTTGCAGGGAGCTTGGCATTGGAATAGTTCCATATAGTCCTCTTGGTGGTGGGTTTTTCGGTGGCAAAGCAGTTGCTGAAAGTGTGCCTTCAAATAGTTTTGTGTCATCACGTCCTCGGTTTGTAGGAGAGAACTTGCAGAAAAACAAGACTATTTACAATCGACTGGAAAACCTTGCTGAAAAGCACCAATGCCTTACCGCTCAACTAGCATTAGCATGGGTTCTCCACCAAGGAGATGATGTTGTACCTATCCCAGGGACAACAAAGATAAGGAACCTGGATGCAAATATTGGCTCCTTGAAGGTGAAACTTGGGGAGGAAGACGTGAAAGAAGTTTCTGGTACTGTACCACTAGACCAAGTCGCCGGTGGTAGAACTTGTGGAAACCTGATGCATTTGCAATGGCAATTCGCCAACACTCCTCCAAAAGAATCCAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

348

Amino Acids

38.21

Weight (kDa)

5.96

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 313 3.4e-76 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 418
AccBSI CCGCTC 2 cut(s) 545, 803
AccI GTMKAC 1 cut(s) 102
AccIII TCCGGA 2 cut(s) 325, 502
AciI CCGC 2 cut(s) 543, 801
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 2 cut(s) 467, 513
AfaI GTAC 5 cut(s) 322, 479, 849, 946, 951
AfiI CCNNNNNNNGG 2 cut(s) 647, 857
AgsI TTSAA 6 cut(s) 157, 235, 260, 361, 693, 904
AjiI CACGTC 2 cut(s) 713, 928
AjnI CCWGG 2 cut(s) 856, 879
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 4 cut(s) 185, 357, 445, 613
AluI AGCT 4 cut(s) 185, 357, 445, 613
Alw26I GTCTC 2 cut(s) 67, 95
AlwNI CAGNNNCTG 1 cut(s) 677
Aor13HI TCCGGA 2 cut(s) 325, 502
ApoI RAATTY 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 452, 919
AsuNHI GCTAGC 1 cut(s) 353
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 523
BanI GGYRCC 1 cut(s) 418
BauI CACGAG 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 930
BbvCI CCTCAGC 1 cut(s) 6
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 2 cut(s) 858, 881
BcoDI GTCTC 2 cut(s) 67, 95
BfaI CTAG 4 cut(s) 303, 354, 809, 956
BfmI CTRYAG 1 cut(s) 423
BglII AGATCT 1 cut(s) 1041
Bme1390I CCNGG 2 cut(s) 858, 881
Bme18I GGWCC 1 cut(s) 197
BmgBI CACGTC 2 cut(s) 713, 928
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 3 cut(s) 420, 878, 898
BmrFI CCNGG 2 cut(s) 858, 881
BmsI GCATC 6 cut(s) 71, 139, 178, 304, 874, 984
BmtI GCTAGC 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 930
Bpu10I CCTNAGC 1 cut(s) 6
BsaI GGTCTC 2 cut(s) 67, 95
BsaJI CCNNGG 4 cut(s) 716, 832, 856, 857
BsaWI WCCGGW 3 cut(s) 325, 336, 502
BsaXI ACNNNNNCTCC 4 cut(s) 307, 337, 828, 858
Bsc4I CCNNNNNNNGG 2 cut(s) 647, 857
Bse118I RCCGGY 1 cut(s) 968
Bse1I ACTGG 3 cut(s) 100, 498, 771
Bse3DI GCAATG 1 cut(s) 1010
BseAI TCCGGA 2 cut(s) 325, 502
BseBI CCWGG 2 cut(s) 858, 881
BseDI CCNNGG 4 cut(s) 716, 832, 856, 857
BseGI GGATG 5 cut(s) 86, 133, 295, 532, 889
BseLI CCNNNNNNNGG 2 cut(s) 647, 857
BseMI GCAATG 1 cut(s) 1010
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 3 cut(s) 100, 498, 771
BseRI GAGGAG 2 cut(s) 23, 1014
BseSI GKGCMC 1 cut(s) 523
BshNI GGYRCC 1 cut(s) 418
BsiSI CCGG 4 cut(s) 326, 337, 503, 969
BslFI GGGAC 1 cut(s) 874
BslI CCNNNNNNNGG 2 cut(s) 647, 857
BsmAI GTCTC 2 cut(s) 67, 95
BsmFI GGGAC 1 cut(s) 874
Bso31I GGTCTC 2 cut(s) 67, 95
Bsp1286I GDGCHC 1 cut(s) 523
Bsp13I TCCGGA 2 cut(s) 325, 502
Bsp143I GATC 2 cut(s) 385, 1041
BspACI CCGC 2 cut(s) 543, 801
BspCNI CTCAG 1 cut(s) 61
BspEI TCCGGA 2 cut(s) 325, 502
BspLI GGNNCC 3 cut(s) 420, 878, 898
BspOI GCTAGC 1 cut(s) 357
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 2 cut(s) 67, 95
BsrBI CCGCTC 2 cut(s) 545, 803
BsrDI GCAATG 1 cut(s) 1010
BsrFI RCCGGY 1 cut(s) 968
BsrI ACTGG 3 cut(s) 100, 498, 771
BssAI RCCGGY 1 cut(s) 968
BssECI CCNNGG 4 cut(s) 716, 832, 856, 857
BssMI GATC 2 cut(s) 385, 1041
BssSI CACGAG 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 832
Bst2BI CACGAG 1 cut(s) 573
Bst2UI CCWGG 2 cut(s) 858, 881
Bst4CI ACNGT 2 cut(s) 418, 949
Bst6I CTCTTC 1 cut(s) 582
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 6, 48
BstENI CCTNNNNNAGG 1 cut(s) 855
BstF5I GGATG 5 cut(s) 86, 133, 295, 532, 889
BstKTI GATC 2 cut(s) 388, 1044
BstMAI GTCTC 2 cut(s) 67, 95
BstMBI GATC 2 cut(s) 385, 1041
BstMWI GCNNNNNNNGC 1 cut(s) 809
BstNI CCWGG 2 cut(s) 858, 881
BstSCI CCNGG 2 cut(s) 856, 879
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 523
BstV2I GAAGAC 1 cut(s) 930
BstX2I RGATCY 1 cut(s) 1041
BstYI RGATCY 1 cut(s) 1041
BtrI CACGTC 2 cut(s) 713, 928
BtsCI GGATG 5 cut(s) 86, 133, 295, 532, 889
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 355
CaiI CAGNNNCTG 1 cut(s) 677
Cfr10I RCCGGY 1 cut(s) 968
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 353
Csp6I GTAC 5 cut(s) 321, 478, 848, 945, 950
CspCI CAANNNNNGTGG 4 cut(s) 256, 291, 539, 574
CviAII CATG 2 cut(s) 85, 819
CviQI GTAC 5 cut(s) 321, 478, 848, 945, 950
DdeI CTNAG 2 cut(s) 6, 48
DpnI GATC 2 cut(s) 387, 1043
DpnII GATC 2 cut(s) 385, 1041
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 832
Eco31I GGTCTC 2 cut(s) 67, 95
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 467, 513
EcoNI CCTNNNNNAGG 1 cut(s) 855
EcoRII CCWGG 2 cut(s) 856, 879
EcoT14I CCWWGG 1 cut(s) 832
EcoT22I ATGCAT 4 cut(s) 86, 193, 297, 999
ErhI CCWWGG 1 cut(s) 832
FaeI CATG 2 cut(s) 88, 822
FalI AAGNNNNNCTT 4 cut(s) 24, 56, 673, 705
FaqI GGGAC 1 cut(s) 874
FatI CATG 2 cut(s) 84, 818
FauNDI CATATG 1 cut(s) 193
FblI GTMKAC 1 cut(s) 102
FokI GGATG 5 cut(s) 93, 140, 282, 519, 896
FspBI CTAG 4 cut(s) 303, 354, 809, 956
HapII CCGG 4 cut(s) 326, 337, 503, 969
HgaI GACGC 1 cut(s) 353
Hin1II CATG 2 cut(s) 88, 822
HinfI GANTC 5 cut(s) 25, 132, 165, 571, 1034
HpaII CCGG 4 cut(s) 326, 337, 503, 969
HphI GGTGA 2 cut(s) 452, 919
Hpy166II GTNNAC 3 cut(s) 103, 376, 409
Hpy188I TCNGA 3 cut(s) 121, 493, 1046
Hpy188III TCNNGA 5 cut(s) 326, 368, 503, 568, 575
Hpy8I GTNNAC 3 cut(s) 103, 376, 409
HpyAV CCTTC 7 cut(s) 7, 163, 220, 458, 510, 699, 898
HpyCH4III ACNGT 2 cut(s) 418, 949
HpyCH4IV ACGT 2 cut(s) 712, 927
HpyCH4V TGCA 8 cut(s) 84, 191, 295, 606, 739, 887, 997, 1003
HpyF10VI GCNNNNNNNGC 1 cut(s) 809
HpyF3I CTNAG 2 cut(s) 6, 48
HpySE526I ACGT 2 cut(s) 712, 927
Hsp92II CATG 2 cut(s) 88, 822
Kpn2I TCCGGA 2 cut(s) 325, 502
Kzo9I GATC 2 cut(s) 385, 1041
LmnI GCTCC 2 cut(s) 610, 902
LweI GCATC 6 cut(s) 71, 139, 178, 304, 874, 984
MaeI CTAG 4 cut(s) 303, 354, 809, 956
MaeII ACGT 2 cut(s) 712, 927
MaeIII GTNAC 1 cut(s) 561
MalI GATC 2 cut(s) 387, 1043
MbiI CCGCTC 2 cut(s) 545, 803
MboI GATC 2 cut(s) 385, 1041
MboII GAAGA 4 cut(s) 460, 473, 599, 935
MfeI CAATTG 1 cut(s) 239
MflI RGATCY 1 cut(s) 1041
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 6 cut(s) 68, 239, 255, 260, 288, 1010
MlyI GAGTC 1 cut(s) 565
Mph1103I ATGCAT 4 cut(s) 86, 193, 297, 999
MroI TCCGGA 2 cut(s) 325, 502
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 36, 309
MslI CAYNNNNRTG 3 cut(s) 207, 416, 817
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 4 cut(s) 326, 337, 503, 969
MspR9I CCNGG 2 cut(s) 858, 881
MunI CAATTG 1 cut(s) 239
MvaI CCWGG 2 cut(s) 858, 881
MwoI GCNNNNNNNGC 1 cut(s) 809
NdeI CATATG 1 cut(s) 193
NdeII GATC 2 cut(s) 385, 1041
NheI GCTAGC 1 cut(s) 353
NlaIII CATG 2 cut(s) 88, 822
NlaIV GGNNCC 3 cut(s) 420, 878, 898
NmuCI GTSAC 1 cut(s) 561
NsiI ATGCAT 4 cut(s) 86, 193, 297, 999
OliI CACNNNNGTG 1 cut(s) 416
PasI CCCWGGG 1 cut(s) 857
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 4 cut(s) 25, 132, 165, 1034
PflFI GACNNNGTC 1 cut(s) 962
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
Psp6I CCWGG 2 cut(s) 856, 879
PspGI CCWGG 2 cut(s) 856, 879
PspN4I GGNNCC 3 cut(s) 420, 878, 898
PspPI GGNCC 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 1 cut(s) 1041
PsyI GACNNNGTC 1 cut(s) 962
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 5 cut(s) 322, 479, 849, 946, 951
RsaNI GTAC 5 cut(s) 321, 478, 848, 945, 950
RseI CAYNNNNRTG 3 cut(s) 207, 416, 817
SaqAI TTAA 2 cut(s) 36, 309
Sau3AI GATC 2 cut(s) 385, 1041
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 2 cut(s) 858, 881
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 6 cut(s) 71, 139, 178, 304, 874, 984
SfcI CTRYAG 1 cut(s) 423
SgrAI CRCCGGYG 1 cut(s) 968
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 3 cut(s) 207, 416, 817
Sse9I AATT 6 cut(s) 68, 239, 255, 260, 288, 1010
SsiI CCGC 2 cut(s) 543, 801
SspI AATATT 1 cut(s) 892
SspMI CTAG 4 cut(s) 303, 354, 809, 956
StyD4I CCNGG 2 cut(s) 856, 879
StyI CCWWGG 1 cut(s) 832
TaaI ACNGT 2 cut(s) 418, 949
TaiI ACGT 2 cut(s) 715, 930
TaqI TCGA 1 cut(s) 763
TasI AATT 6 cut(s) 68, 239, 255, 260, 288, 1010
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 4 cut(s) 25, 132, 165, 1034
Tru1I TTAA 2 cut(s) 36, 309
Tru9I TTAA 2 cut(s) 36, 309
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 561
Tsp45I GTSAC 1 cut(s) 561
TspDTI ATGAA 2 cut(s) 225, 521
TspRI CASTG 1 cut(s) 100
Tth111I GACNNNGTC 1 cut(s) 962
VpaK11BI GGWCC 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 855
XapI RAATTY 1 cut(s) 255
XcmI CCANNNNNNNNNTGG 1 cut(s) 968
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 4 cut(s) 303, 354, 809, 956
Zsp2I ATGCAT 4 cut(s) 86, 193, 297, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.