pycom12g22000

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000149
Physical Location & Seq
Reverse (-)
23047202 .. 23048283
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g22000.5

Sequence Viewer

Length: 738 bp
ATGCTAGTAAATGGCAGTCCTGAATATGTCCGCTCCTGCTGCGAGGCTAGCCTGAAGCGCCTTGGCGTGGACTACATTGATCTTTACTATCAGCACCGGATCGATACAACAGTCCCCATAGAGGACACTATGGAGGAGCTAAAGAAGCTGGTGAATGAGGGAAAAATTAAGTACGTCGGATTATCGGAAGCTAGCCCGGACACAATAAGAAGGGCTCATGCAGTTCATCCCATAACTGCTATACAAATGGAGTGGTCCCTTTGGACTCGAGATATCGAGGAAGAAATTGTCCCGCTTTGCAGGGAGCTTGGAATCGGAATAGTGCCATACAGCCCACTTGGTCGCGGATTTTTCGGTGGCAAGGGAGTTGTCGAAAGTCTACCTACAAATAATTTTCTGGTATCAGGTTTCTGTCCTCGATTTACAGGGGACAACTTGGAGAACAACAAGGTCATCTTTGGCAACGTACGAAAGTTGTCCGAGAAGCACGGATGCACCCCTGCACAAGTTGCCCTAGCTTGGATTCTTAGCCAAGGTGATGACGTGGTACCAATCCCTGGAACGACAAAGATAAAAAATCTCGATGATAATATCGGATCGTTGAGAGTGAAACTCACTGAAGAAGATGTGAAGGAGGTTTCTGATGCGATACCCGTCAACGGTGCGGCAGGGGAAAGATATAGTGACGGTTTGAATAGCTGGTCATGGAAGTTTGCAAATACACCAGCAAAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

246

Amino Acids

27.08

Weight (kDa)

5.35

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 547
AccB1I GGYRCC 1 cut(s) 547
AccB7I CCANNNNNTGG 1 cut(s) 557
AccBSI CCGCTC 1 cut(s) 33
AccI GTMKAC 1 cut(s) 379
AccII CGCG 1 cut(s) 345
AciI CCGC 4 cut(s) 31, 293, 345, 665
AclWI GGATC 2 cut(s) 107, 604
AcuI CTGAAG 2 cut(s) 74, 639
AfaI GTAC 3 cut(s) 173, 468, 549
AfiI CCNNNNNNNGG 5 cut(s) 67, 121, 519, 557, 659
AgsI TTSAA 1 cut(s) 694
AjiI CACGTC 1 cut(s) 544
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 6 cut(s) 139, 148, 191, 307, 518, 699
AluI AGCT 6 cut(s) 139, 148, 191, 307, 518, 699
AlwI GGATC 2 cut(s) 107, 604
Ama87I CYCGRG 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 39
Asp718I GGTACC 1 cut(s) 547
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 255
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 163, 548
AsuNHI GCTAGC 2 cut(s) 47, 191
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 1 cut(s) 255
BaeI ACNNNNGTAYC 2 cut(s) 96, 129
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 558
BcnI CCSGG 1 cut(s) 197
BfaI CTAG 4 cut(s) 5, 48, 192, 515
BfoI RGCGCY 1 cut(s) 61
BisI GCNGC 2 cut(s) 40, 666
BlsI GCNGC 2 cut(s) 41, 667
Bme1390I CCNGG 2 cut(s) 197, 558
Bme18I GGWCC 1 cut(s) 255
BmeT110I CYCGRG 1 cut(s) 267
BmgBI CACGTC 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 2 cut(s) 257, 549
BmrFI CCNGG 2 cut(s) 197, 558
BmsI GCATC 2 cut(s) 482, 634
BmtI GCTAGC 2 cut(s) 51, 195
BplI GAGNNNNNCTC 2 cut(s) 597, 629
BpuMI CCSGG 1 cut(s) 197
Bsa29I ATCGAT 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 61, 532, 556
BsaWI WCCGGW 1 cut(s) 96
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 121, 519, 557, 659
BseBI CCWGG 1 cut(s) 558
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 3 cut(s) 61, 532, 556
BseGI GGATG 2 cut(s) 226, 497
BseLI CCNNNNNNNGG 5 cut(s) 67, 121, 519, 557, 659
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 486
Bsh1236I CGCG 1 cut(s) 345
BshNI GGYRCC 1 cut(s) 547
BshVI ATCGAT 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 2 cut(s) 97, 197
BsiWI CGTACG 1 cut(s) 466
BslFI GGGAC 4 cut(s) 98, 241, 275, 443
BslI CCNNNNNNNGG 5 cut(s) 67, 121, 519, 557, 659
BsmFI GGGAC 4 cut(s) 98, 241, 275, 443
BsoBI CYCGRG 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 3 cut(s) 79, 99, 596
BspACI CCGC 4 cut(s) 31, 293, 345, 665
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 257, 549
BspOI GCTAGC 2 cut(s) 51, 195
BspPI GGATC 2 cut(s) 107, 604
BspT107I GGYRCC 1 cut(s) 547
BsrBI CCGCTC 1 cut(s) 33
BssECI CCNNGG 3 cut(s) 61, 532, 556
BssMI GATC 3 cut(s) 79, 99, 596
BssT1I CCWWGG 2 cut(s) 61, 532
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 3 cut(s) 112, 662, 689
BstAPI GCANNNNNTGC 1 cut(s) 509
BstC8I GCNNGC 2 cut(s) 49, 193
BstDEI CTNAG 1 cut(s) 527
BstF5I GGATG 2 cut(s) 226, 497
BstFNI CGCG 1 cut(s) 345
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 3 cut(s) 82, 102, 599
BstMBI GATC 3 cut(s) 79, 99, 596
BstMWI GCNNNNNNNGC 5 cut(s) 39, 48, 57, 145, 509
BstNI CCWGG 1 cut(s) 558
BstSCI CCNGG 2 cut(s) 195, 556
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 26
Bsu15I ATCGAT 1 cut(s) 102
BsuTUI ATCGAT 1 cut(s) 102
BtrI CACGTC 1 cut(s) 544
BtsCI GGATG 2 cut(s) 226, 497
BtsIMutI CAGTG 1 cut(s) 615
Cac8I GCNNGC 2 cut(s) 49, 193
CfoI GCGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 255
ClaI ATCGAT 1 cut(s) 102
Csp6I GTAC 3 cut(s) 172, 467, 548
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 2 cut(s) 218, 705
CviQI GTAC 3 cut(s) 172, 467, 548
DdeI CTNAG 1 cut(s) 527
DpnI GATC 3 cut(s) 81, 101, 598
DpnII GATC 3 cut(s) 79, 99, 596
Eco130I CCWWGG 2 cut(s) 61, 532
Eco24I GRGCYC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 255
Eco57I CTGAAG 2 cut(s) 74, 639
Eco88I CYCGRG 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 556
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 61, 532
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 2 cut(s) 61, 532
FaeI CATG 2 cut(s) 221, 708
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 4 cut(s) 98, 241, 275, 443
FatI CATG 2 cut(s) 217, 704
FauI CCCGC 1 cut(s) 300
FblI GTMKAC 1 cut(s) 379
Fnu4HI GCNGC 2 cut(s) 40, 666
FokI GGATG 2 cut(s) 213, 504
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 2 cut(s) 40, 666
FspBI CTAG 4 cut(s) 5, 48, 192, 515
GlaI GCGC 1 cut(s) 59
GluI GCNGC 2 cut(s) 40, 666
HaeII RGCGCY 1 cut(s) 61
HapII CCGG 2 cut(s) 97, 197
HhaI GCGC 1 cut(s) 60
Hin1II CATG 2 cut(s) 221, 708
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 3 cut(s) 265, 312, 523
HpaII CCGG 2 cut(s) 97, 197
HphI GGTGA 2 cut(s) 163, 548
Hpy166II GTNNAC 3 cut(s) 70, 380, 658
Hpy188I TCNGA 6 cut(s) 179, 187, 317, 481, 596, 643
Hpy188III TCNNGA 3 cut(s) 20, 269, 581
Hpy8I GTNNAC 3 cut(s) 70, 380, 658
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 204, 625
HpyCH4III ACNGT 3 cut(s) 112, 662, 689
HpyCH4IV ACGT 3 cut(s) 174, 465, 543
HpyCH4V TGCA 5 cut(s) 221, 300, 495, 503, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 48, 57, 145, 509
HpyF3I CTNAG 1 cut(s) 527
HpySE526I ACGT 3 cut(s) 174, 465, 543
Hsp92II CATG 2 cut(s) 221, 708
HspAI GCGC 1 cut(s) 58
KpnI GGTACC 1 cut(s) 551
Kzo9I GATC 3 cut(s) 79, 99, 596
LmnI GCTCC 3 cut(s) 38, 136, 304
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 2 cut(s) 482, 634
MaeI CTAG 4 cut(s) 5, 48, 192, 515
MaeII ACGT 3 cut(s) 174, 465, 543
MaeIII GTNAC 1 cut(s) 683
MalI GATC 3 cut(s) 81, 101, 598
MbiI CCGCTC 1 cut(s) 33
MboI GATC 3 cut(s) 79, 99, 596
MboII GAAGA 3 cut(s) 293, 632, 635
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 3 cut(s) 165, 285, 391
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 7 cut(s) 37, 115, 127, 151, 271, 426, 628
MseI TTAA 1 cut(s) 168
MspI CCGG 2 cut(s) 97, 197
MspR9I CCNGG 2 cut(s) 197, 558
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 5 cut(s) 39, 48, 57, 145, 509
NciI CCSGG 1 cut(s) 197
NdeII GATC 3 cut(s) 79, 99, 596
NheI GCTAGC 2 cut(s) 47, 191
NlaIII CATG 2 cut(s) 221, 708
NlaIV GGNNCC 2 cut(s) 257, 549
NmuCI GTSAC 1 cut(s) 683
PaeR7I CTCGAG 1 cut(s) 267
PfeI GAWTC 2 cut(s) 312, 523
Pfl23II CGTACG 1 cut(s) 466
PflMI CCANNNNNTGG 1 cut(s) 557
PkrI GCNGC 2 cut(s) 41, 667
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 556
PspLI CGTACG 1 cut(s) 466
PspN4I GGNNCC 2 cut(s) 257, 549
PspPI GGNCC 1 cut(s) 255
RsaI GTAC 3 cut(s) 173, 468, 549
RsaNI GTAC 3 cut(s) 172, 467, 548
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 40, 666
Sau3AI GATC 3 cut(s) 79, 99, 596
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 197, 558
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 2 cut(s) 482, 634
Sfr274I CTCGAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 255
SlaI CTCGAG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 3 cut(s) 165, 285, 391
SsiI CCGC 4 cut(s) 31, 293, 345, 665
SspMI CTAG 4 cut(s) 5, 48, 192, 515
StyD4I CCNGG 2 cut(s) 195, 556
StyI CCWWGG 2 cut(s) 61, 532
TaaI ACNGT 3 cut(s) 112, 662, 689
TaiI ACGT 3 cut(s) 177, 468, 546
TaqI TCGA 6 cut(s) 102, 268, 276, 372, 418, 582
TasI AATT 3 cut(s) 165, 285, 391
TauI GCSGC 1 cut(s) 668
TfiI GAWTC 2 cut(s) 312, 523
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 504
TspRI CASTG 1 cut(s) 622
Van91I CCANNNNNTGG 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 255
XhoI CTCGAG 1 cut(s) 267
XmiI GTMKAC 1 cut(s) 379
XspI CTAG 4 cut(s) 5, 48, 192, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.