pycom13g17420

Perakine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000149
Physical Location & Seq
Reverse (-)
13170698 .. 13172732
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g17420.5

Sequence Viewer

Length: 933 bp
ATGGAGGACAAGTCACAGATTCAAATCCCACTAGTTAAACTAGGTAGTCAGGGCTTGGAGGTTTCTAGACTGGGTTATGGATGTGGGGGACTATCTGGGACATACAATGGCAACAAAGCTCCGCTCTCTGATGAAGCTGGATGTACAATTATTAAGGAAGCATTTGATAGGGGCATCACCTTCTTTGATACTTCAGATCTTTACGGCCTTAATCATCACAACGAAATCTTGCTTGGAGCCGCTTTGAAACAGCTTCCTAGAGAGAAAGTTCAATTGGCTACAAAATTTGGCATTGCCATGTCAGGAAACTACGAATTTCGGGTGAATGGGAACCCGGAATATGTGAGGTCATGCTGTGAAGCTAGTCTTAAGCGGCTGGATGTCAGCTACATCGATCTCTACTATCAGCACCGCGTTGATGTTTCAGTGCCAATTGAGGATACTATAGGGGAGCTTAAGAAGCTGGTAAATGAAGGAAAAATCCGATACATTGGTCTGTCAGAAGCTAGTGCTGACACAATAACTAGAGCTCATGCTGTTCATCCCATCACTGCTGTGCAAATGGAGTATTCTCTGTGGAGTCGTGAAATCGAAAATGAGATTATTCCCCTTTGCCGGTTCAATGGCGAGAATTTGGAAAAGAACAAACTACTTTATGGCAAATTTGCCAGCCTTGCAACACAGCATGCCTGCACTGCTCCTCAATTAGCTCTAGCATGGCTTCTCCATCAGGACAATTATAATGTCCCAATCCCTGGGACAACTCAAGTTAAGAACCTTGATATCAACATTGGATCGTTGAATGTGAAGCTTACGGATGAGGACTTGAAAGAAATTTCTGATGGTGTGCCCAGTGATGAAGTTGGTGGTGACCGAGAATTTGAACTTTTTGCAAAATATGTCTGGAACTATGCAAATACCCCATCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

311

Amino Acids

34.45

Weight (kDa)

5.27

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 741
AccB7I CCANNNNNTGG 1 cut(s) 755
AccBSI CCGCTC 1 cut(s) 124
AccII CGCG 1 cut(s) 414
AciI CCGC 4 cut(s) 122, 240, 373, 412
AclWI GGATC 1 cut(s) 802
AcsI RAATTY 6 cut(s) 284, 314, 631, 662, 834, 878
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 2 cut(s) 615, 755
AflII CTTAAG 2 cut(s) 368, 455
AgsI TTSAA 7 cut(s) 23, 247, 272, 622, 802, 829, 884
AhlI ACTAGT 1 cut(s) 31
AjnI CCWGG 1 cut(s) 754
AjuI GAANNNNNNNTTGG 4 cut(s) 216, 248, 257, 289
AleI CACNNNNGTG 1 cut(s) 554
Alw21I GWGCWC 1 cut(s) 532
AlwI GGATC 1 cut(s) 802
AoxI GGCC 1 cut(s) 205
ApoI RAATTY 6 cut(s) 284, 314, 631, 662, 834, 878
ArsI GACNNNNNNTTYG 2 cut(s) 863, 895
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 3 cut(s) 169, 334, 881
BaeGI GKGCMC 1 cut(s) 852
BaeI ACNNNNGTAYC 2 cut(s) 478, 511
BanII GRGCYC 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 532
BccI CCATC 4 cut(s) 554, 735, 836, 931
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 756
BciVI GTATCC 1 cut(s) 433
BcnI CCSGG 1 cut(s) 335
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 8 cut(s) 32, 41, 66, 258, 363, 507, 525, 713
BfmI CTRYAG 1 cut(s) 444
BfrI CTTAAG 2 cut(s) 368, 455
BfuI GTATCC 1 cut(s) 433
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 240, 374
BlsI GCNGC 2 cut(s) 241, 375
Bme1390I CCNGG 2 cut(s) 335, 756
BmiI GGNNCC 2 cut(s) 238, 332
BmrFI CCNGG 2 cut(s) 335, 756
BmrI ACTGGG 2 cut(s) 80, 846
BmsI GCATC 1 cut(s) 183
BmuI ACTGGG 2 cut(s) 80, 846
BpuEI CTTGAG 1 cut(s) 750
BpuMI CCSGG 1 cut(s) 335
Bsa29I ATCGAT 1 cut(s) 393
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 754, 755
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 615, 755
Bse118I RCCGGY 1 cut(s) 615
Bse1I ACTGG 2 cut(s) 75, 852
Bse3DI GCAATG 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 23
BseBI CCWGG 1 cut(s) 756
BseCI ATCGAT 1 cut(s) 393
BseDI CCNNGG 2 cut(s) 754, 755
BseGI GGATG 5 cut(s) 86, 146, 385, 541, 823
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 615, 755
BseMI GCAATG 1 cut(s) 291
BseNI ACTGG 2 cut(s) 75, 852
BseRI GAGGAG 1 cut(s) 690
BseSI GKGCMC 1 cut(s) 852
BsgI GTGCAG 1 cut(s) 676
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 1 cut(s) 207
BshVI ATCGAT 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 532
BsiSI CCGG 2 cut(s) 335, 616
BslFI GGGAC 4 cut(s) 102, 112, 731, 772
BslI CCNNNNNNNGG 2 cut(s) 615, 755
BsmFI GGGAC 4 cut(s) 102, 112, 731, 772
BsnI GGCC 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 532, 852
Bsp1407I TGTACA 1 cut(s) 143
Bsp143I GATC 3 cut(s) 196, 394, 794
BspACI CCGC 4 cut(s) 122, 240, 373, 412
BspANI GGCC 1 cut(s) 207
BspDI ATCGAT 1 cut(s) 393
BspFNI CGCG 1 cut(s) 414
BspLI GGNNCC 2 cut(s) 238, 332
BspPI GGATC 1 cut(s) 802
BspTI CTTAAG 2 cut(s) 368, 455
BsrBI CCGCTC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 615
BsrGI TGTACA 1 cut(s) 143
BsrI ACTGG 2 cut(s) 75, 852
BssAI RCCGGY 1 cut(s) 615
BssECI CCNNGG 2 cut(s) 754, 755
BssMI GATC 3 cut(s) 196, 394, 794
Bst2UI CCWGG 1 cut(s) 756
BstAFI CTTAAG 2 cut(s) 368, 455
BstAUI TGTACA 1 cut(s) 143
BstC8I GCNNGC 3 cut(s) 670, 687, 691
BstEII GGTNACC 1 cut(s) 869
BstF5I GGATG 5 cut(s) 86, 146, 385, 541, 823
BstFNI CGCG 1 cut(s) 414
BstKTI GATC 3 cut(s) 199, 397, 797
BstMBI GATC 3 cut(s) 196, 394, 794
BstMWI GCNNNNNNNGC 3 cut(s) 460, 674, 695
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 1 cut(s) 689
BstPI GGTNACC 1 cut(s) 869
BstSCI CCNGG 2 cut(s) 333, 754
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 1 cut(s) 852
BstUI CGCG 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
Bsu15I ATCGAT 1 cut(s) 393
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 1 cut(s) 207
BsuTUI ATCGAT 1 cut(s) 393
BtsCI GGATG 5 cut(s) 86, 146, 385, 541, 823
BtsI GCAGTG 2 cut(s) 549, 693
BtsIMutI CAGTG 4 cut(s) 432, 549, 693, 859
Cac8I GCNNGC 3 cut(s) 670, 687, 691
Cfr10I RCCGGY 1 cut(s) 615
ClaI ATCGAT 1 cut(s) 393
Csp6I GTAC 1 cut(s) 144
CviAII CATG 5 cut(s) 298, 351, 533, 686, 717
CviQI GTAC 1 cut(s) 144
DpnI GATC 3 cut(s) 198, 396, 796
DpnII GATC 3 cut(s) 196, 394, 794
Ecl136II GAGCTC 1 cut(s) 530
Eco24I GRGCYC 1 cut(s) 532
Eco32I GATATC 1 cut(s) 784
Eco53kI GAGCTC 1 cut(s) 530
Eco57I CTGAAG 1 cut(s) 177
Eco91I GGTNACC 1 cut(s) 869
EcoICRI GAGCTC 1 cut(s) 530
EcoO65I GGTNACC 1 cut(s) 869
EcoRII CCWGG 1 cut(s) 754
EcoRV GATATC 1 cut(s) 784
EcoT38I GRGCYC 1 cut(s) 532
FaeI CATG 5 cut(s) 301, 354, 536, 689, 720
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 4 cut(s) 102, 112, 731, 772
FatI CATG 5 cut(s) 297, 350, 532, 685, 716
Fnu4HI GCNGC 2 cut(s) 240, 374
FokI GGATG 5 cut(s) 93, 153, 392, 528, 830
FriOI GRGCYC 1 cut(s) 532
Fsp4HI GCNGC 2 cut(s) 240, 374
FspBI CTAG 8 cut(s) 32, 41, 66, 258, 363, 507, 525, 713
GluI GCNGC 2 cut(s) 240, 374
HaeIII GGCC 1 cut(s) 207
HapII CCGG 2 cut(s) 335, 616
Hin1II CATG 5 cut(s) 301, 354, 536, 689, 720
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 2 cut(s) 19, 580
HpaII CCGG 2 cut(s) 335, 616
HphI GGTGA 3 cut(s) 169, 334, 881
Hpy188I TCNGA 5 cut(s) 130, 196, 485, 502, 841
Hpy188III TCNNGA 5 cut(s) 66, 303, 584, 731, 904
HpyAV CCTTC 2 cut(s) 190, 467
HpyCH4V TGCA 5 cut(s) 559, 677, 693, 893, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 460, 674, 695
Hsp92II CATG 5 cut(s) 301, 354, 536, 689, 720
Kzo9I GATC 3 cut(s) 196, 394, 794
LmnI GCTCC 4 cut(s) 124, 236, 451, 703
LweI GCATC 1 cut(s) 183
MaeI CTAG 8 cut(s) 32, 41, 66, 258, 363, 507, 525, 713
MaeIII GTNAC 2 cut(s) 12, 869
MalI GATC 3 cut(s) 198, 396, 796
MbiI CCGCTC 1 cut(s) 124
MboI GATC 3 cut(s) 196, 394, 794
MfeI CAATTG 2 cut(s) 272, 432
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 2 cut(s) 532, 852
MlyI GAGTC 1 cut(s) 589
MnlI CCTC 5 cut(s) 52, 339, 430, 711, 814
MseI TTAA 6 cut(s) 36, 153, 210, 369, 456, 771
MslI CAYNNNNRTG 2 cut(s) 296, 554
MspCI CTTAAG 2 cut(s) 368, 455
MspI CCGG 2 cut(s) 335, 616
MspR9I CCNGG 2 cut(s) 335, 756
MunI CAATTG 2 cut(s) 272, 432
MvaI CCWGG 1 cut(s) 756
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 3 cut(s) 460, 674, 695
NciI CCSGG 1 cut(s) 335
NdeII GATC 3 cut(s) 196, 394, 794
NlaIII CATG 5 cut(s) 301, 354, 536, 689, 720
NlaIV GGNNCC 2 cut(s) 238, 332
NmuCI GTSAC 2 cut(s) 12, 869
NspI RCATGY 1 cut(s) 689
OliI CACNNNNGTG 1 cut(s) 554
PaeI GCATGC 1 cut(s) 689
PasI CCCWGGG 1 cut(s) 755
PfeI GAWTC 1 cut(s) 19
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 2 cut(s) 241, 375
PleI GAGTC 1 cut(s) 588
PpsI GAGTC 1 cut(s) 588
PsiI TTATAA 1 cut(s) 741
Psp124BI GAGCTC 1 cut(s) 532
Psp6I CCWGG 1 cut(s) 754
PspEI GGTNACC 1 cut(s) 869
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 2 cut(s) 238, 332
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
RseI CAYNNNNRTG 2 cut(s) 296, 554
SacI GAGCTC 1 cut(s) 532
SaqAI TTAA 6 cut(s) 36, 153, 210, 369, 456, 771
SatI GCNGC 2 cut(s) 240, 374
Sau3AI GATC 3 cut(s) 196, 394, 794
SchI GAGTC 1 cut(s) 589
ScrFI CCNGG 2 cut(s) 335, 756
SduI GDGCHC 2 cut(s) 532, 852
SfaNI GCATC 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 444
SmiMI CAYNNNNRTG 2 cut(s) 296, 554
SmlI CTYRAG 3 cut(s) 368, 455, 765
SmoI CTYRAG 3 cut(s) 368, 455, 765
SpeI ACTAGT 1 cut(s) 31
SphI GCATGC 1 cut(s) 689
SsiI CCGC 4 cut(s) 122, 240, 373, 412
SspMI CTAG 8 cut(s) 32, 41, 66, 258, 363, 507, 525, 713
SstI GAGCTC 1 cut(s) 532
StyD4I CCNGG 2 cut(s) 333, 754
TaqI TCGA 2 cut(s) 393, 591
TaqII GACCGA 1 cut(s) 888
TatI WGTACW 1 cut(s) 143
TauI GCSGC 2 cut(s) 242, 376
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 6 cut(s) 36, 153, 210, 369, 456, 771
Tru9I TTAA 6 cut(s) 36, 153, 210, 369, 456, 771
TscAI CASTG 4 cut(s) 432, 556, 700, 859
TseFI GTSAC 2 cut(s) 12, 869
Tsp45I GTSAC 2 cut(s) 12, 869
TspDTI ATGAA 4 cut(s) 147, 486, 530, 873
TspGWI ACGGA 1 cut(s) 830
TspRI CASTG 4 cut(s) 432, 556, 700, 859
Van91I CCANNNNNTGG 1 cut(s) 755
Vha464I CTTAAG 2 cut(s) 368, 455
XapI RAATTY 6 cut(s) 284, 314, 631, 662, 834, 878
XbaI TCTAGA 1 cut(s) 65
XceI RCATGY 1 cut(s) 689
XspI CTAG 8 cut(s) 32, 41, 66, 258, 363, 507, 525, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.