Rw3G002590

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000149
Physical Location & Seq
Forward (+)
2273108 .. 2285094
11987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002590.1

Sequence Viewer

Length: 1041 bp
ATGGCTGTCCAAATTCCTAGAGTGAAACTCGGGAGTGAGGGATTTGAGGTTTCCAAGTTGGGACTTGGTTGTTTGGGACTTAGTGGATATTACAATGCTCCACTAGCTGAAGAGGCTGGCATATCAATAATCAAGCATGCATTCGATAATGGAATCACGTTCTTTGATACATCAGATATTTATGGACCAGAAACTAATGAAGTTTTGATCGGAAAGGCATTGAAGCAGCTGCCTCGAGATAAGGTTCAGGTTGCTACAAAGTTTGGTATTGTAAATATCAAGAAACCACAAGTTACACTTAATAGCAGTCCTGAGTATATACGCTCCTGCTGCGAGGCTAGCCTGAAGCGCCTTGATGTGGAGTATATTGATCTTTACTATCAGCACCGTGTAGACCCATCAGTACCAATAGAGGATACCATGGAGGAACTAAAGAAGTTGGTGAAGGAGGGGAAGATAAAGTACATCGGATTATCCGAAGCCAGCCCAGAAACAATAAAGAGGGCACATGCAGTTCATCCCATTACAGCTGTACAAATGGAGTGGTCTCTTTGGACTCGCGACATTGAGGAAGAAATCGTCCCACTTTGCAGGGAACTTGGAATTGGGATAGTGCCATACCACCCCCTTGGTCGTGGGTTTTTAGCTCGAGATGGGCTACCTGAAGATCGTTTCCTGCGTTCAACTCCTCGATGTCAAGGAGACAACCTCAAGGAAAATAAGATCCTTCAGGGTAAAGTACAGAACTTGGCTGAAAAATATGAATGCATCCCTGCACAACTCGCGCTTGCGTGGCTCATTAATCAACCCGATGCCTGTTGTGTGCCTGGTGTTGTACCTATATTTGGCACAACCAAGACTAAACATATAGATGCTAATGTTGGTTCCTTGAGGGTGAAGCTATCTAAAGAAGATATACAAGAGATATCTGAGACGATACCTATCAACGCAGCGGCAGGGTACAGAGTACCCGCCAATGTCATTTGCTACACTTGGAAGGTTGCAAATACACCAGCAAGCAACGCAACCAAAAGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

346

Amino Acids

38.34

Weight (kDa)

6.99

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 19 - 311 2.4e-74 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 393
AccII CGCG 2 cut(s) 561, 785
AciI CCGC 2 cut(s) 953, 972
AclWI GGATC 1 cut(s) 718
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 4 cut(s) 129, 365, 684, 713
AfaI GTAC 7 cut(s) 405, 464, 534, 741, 837, 962, 969
AfiI CCNNNNNNNGG 2 cut(s) 358, 845
AgsI TTSAA 2 cut(s) 223, 684
AjnI CCWGG 1 cut(s) 826
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 5 cut(s) 107, 229, 530, 647, 901
AluI AGCT 5 cut(s) 107, 229, 530, 647, 901
Alw26I GTCTC 3 cut(s) 552, 696, 926
AlwI GGATC 1 cut(s) 718
Ama87I CYCGRG 3 cut(s) 29, 234, 648
ApeKI GCWGC 4 cut(s) 226, 229, 330, 950
ApoI RAATTY 1 cut(s) 12
AseI ATTAAT 1 cut(s) 801
AspLEI GCGC 2 cut(s) 351, 787
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 454, 907
AsuNHI GCTAGC 1 cut(s) 338
AvaI CYCGRG 3 cut(s) 29, 234, 648
AvaII GGWCC 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 508
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
BbvI GCAGC 4 cut(s) 216, 238, 317, 962
BccI CCATC 2 cut(s) 406, 647
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 828
BciVI GTATCC 1 cut(s) 409
BcoDI GTCTC 3 cut(s) 552, 696, 926
BfaI CTAG 3 cut(s) 18, 104, 339
BfoI RGCGCY 1 cut(s) 352
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 5 cut(s) 227, 230, 331, 951, 954
BlsI GCNGC 5 cut(s) 228, 231, 332, 952, 955
Bme1390I CCNGG 1 cut(s) 828
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 3 cut(s) 29, 234, 648
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 886
BmrFI CCNGG 1 cut(s) 828
BmsI GCATC 3 cut(s) 777, 802, 862
BmtI GCTAGC 1 cut(s) 342
BplI GAGNNNNNCTC 4 cut(s) 12, 44, 693, 725
BpuEI CTTGAG 2 cut(s) 695, 910
BsaBI GATNNNNATC 1 cut(s) 941
BsaI GGTCTC 1 cut(s) 552
BsaJI CCNNGG 2 cut(s) 420, 628
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 845
Bse8I GATNNNNATC 1 cut(s) 941
BseBI CCWGG 1 cut(s) 828
BseDI CCNNGG 2 cut(s) 420, 628
BseGI GGATG 2 cut(s) 517, 768
BseJI GATNNNNATC 1 cut(s) 941
BseLI CCNNNNNNNGG 2 cut(s) 358, 845
BseMII CTCAG 2 cut(s) 303, 921
BseRI GAGGAG 1 cut(s) 678
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 4 cut(s) 216, 238, 317, 962
BsgI GTGCAG 1 cut(s) 759
Bsh1236I CGCG 2 cut(s) 561, 785
BsiHKCI CYCGRG 3 cut(s) 29, 234, 648
BslFI GGGAC 3 cut(s) 75, 90, 566
BslI CCNNNNNNNGG 2 cut(s) 358, 845
BsmAI GTCTC 3 cut(s) 552, 696, 926
BsmBI CGTCTC 1 cut(s) 926
BsmFI GGGAC 3 cut(s) 75, 90, 566
BsmI GAATGC 2 cut(s) 140, 770
Bso31I GGTCTC 1 cut(s) 552
BsoBI CYCGRG 3 cut(s) 29, 234, 648
Bsp1286I GDGCHC 1 cut(s) 508
Bsp1407I TGTACA 1 cut(s) 532
Bsp143I GATC 4 cut(s) 207, 370, 667, 723
Bsp19I CCATGG 1 cut(s) 420
Bsp68I TCGCGA 1 cut(s) 561
BspACI CCGC 2 cut(s) 953, 972
BspCNI CTCAG 2 cut(s) 304, 922
BspFNI CGCG 2 cut(s) 561, 785
BspLI GGNNCC 1 cut(s) 886
BspOI GCTAGC 1 cut(s) 342
BspPI GGATC 1 cut(s) 718
BspTNI GGTCTC 1 cut(s) 552
BsrGI TGTACA 1 cut(s) 532
BssECI CCNNGG 2 cut(s) 420, 628
BssMI GATC 4 cut(s) 207, 370, 667, 723
BssT1I CCWWGG 2 cut(s) 420, 628
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 532
BstC8I GCNNGC 6 cut(s) 118, 138, 340, 484, 789, 1018
BstDEI CTNAG 3 cut(s) 80, 312, 930
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 2 cut(s) 517, 768
BstFNI CGCG 2 cut(s) 561, 785
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 2 cut(s) 351, 787
BstKTI GATC 4 cut(s) 210, 373, 670, 726
BstMAI GTCTC 3 cut(s) 552, 696, 926
BstMBI GATC 4 cut(s) 207, 370, 667, 723
BstMWI GCNNNNNNNGC 8 cut(s) 104, 113, 330, 339, 348, 782, 793, 1022
BstNI CCWGG 1 cut(s) 828
BstNSI RCATGY 2 cut(s) 140, 512
BstSCI CCNGG 1 cut(s) 826
BstSLI GKGCMC 1 cut(s) 508
BstUI CGCG 2 cut(s) 561, 785
BstV1I GCAGC 4 cut(s) 216, 238, 317, 962
BstX2I RGATCY 1 cut(s) 723
BstXI CCANNNNNNTGG 1 cut(s) 629
BstYI RGATCY 1 cut(s) 723
BsuI GTATCC 1 cut(s) 409
BtgI CCRYGG 1 cut(s) 420
BtsCI GGATG 2 cut(s) 517, 768
BtuMI TCGCGA 1 cut(s) 561
Cac8I GCNNGC 6 cut(s) 118, 138, 340, 484, 789, 1018
CfoI GCGC 2 cut(s) 351, 787
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 7 cut(s) 404, 463, 533, 740, 836, 961, 968
CspCI CAANNNNNGTGG 2 cut(s) 524, 559
CviAII CATG 3 cut(s) 137, 421, 509
CviQI GTAC 7 cut(s) 404, 463, 533, 740, 836, 961, 968
DdeI CTNAG 3 cut(s) 80, 312, 930
DpnI GATC 4 cut(s) 209, 372, 669, 725
DpnII GATC 4 cut(s) 207, 370, 667, 723
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 420, 628
Eco31I GGTCTC 1 cut(s) 552
Eco32I GATATC 1 cut(s) 927
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 4 cut(s) 129, 365, 684, 713
Eco88I CYCGRG 3 cut(s) 29, 234, 648
EcoRII CCWGG 1 cut(s) 826
EcoRV GATATC 1 cut(s) 927
EcoT14I CCWWGG 2 cut(s) 420, 628
EcoT22I ATGCAT 2 cut(s) 142, 770
ErhI CCWWGG 2 cut(s) 420, 628
Esp3I CGTCTC 1 cut(s) 926
FaeI CATG 3 cut(s) 140, 424, 512
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 3 cut(s) 75, 90, 566
FatI CATG 3 cut(s) 136, 420, 508
FauI CCCGC 1 cut(s) 979
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 5 cut(s) 227, 230, 331, 951, 954
FokI GGATG 2 cut(s) 504, 755
Fsp4HI GCNGC 5 cut(s) 227, 230, 331, 951, 954
FspBI CTAG 3 cut(s) 18, 104, 339
GlaI GCGC 2 cut(s) 350, 786
GluI GCNGC 5 cut(s) 227, 230, 331, 951, 954
HaeII RGCGCY 1 cut(s) 352
HhaI GCGC 2 cut(s) 351, 787
Hin1II CATG 3 cut(s) 140, 424, 512
Hin6I GCGC 2 cut(s) 349, 785
HinP1I GCGC 2 cut(s) 349, 785
HinfI GANTC 2 cut(s) 153, 556
HphI GGTGA 2 cut(s) 454, 907
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 5 cut(s) 175, 212, 470, 478, 931
Hpy188III TCNNGA 6 cut(s) 31, 236, 280, 311, 560, 650
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 3 cut(s) 439, 737, 991
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 6 cut(s) 140, 512, 591, 768, 776, 1004
HpyF10VI GCNNNNNNNGC 8 cut(s) 104, 113, 330, 339, 348, 782, 793, 1022
HpyF3I CTNAG 3 cut(s) 80, 312, 930
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 3 cut(s) 140, 424, 512
HspAI GCGC 2 cut(s) 349, 785
Kzo9I GATC 4 cut(s) 207, 370, 667, 723
LmnI GCTCC 2 cut(s) 103, 329
Lsp1109I GCAGC 4 cut(s) 216, 238, 317, 962
LweI GCATC 3 cut(s) 777, 802, 862
MaeI CTAG 3 cut(s) 18, 104, 339
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 292
MalI GATC 4 cut(s) 209, 372, 669, 725
MboI GATC 4 cut(s) 207, 370, 667, 723
MboII GAAGA 5 cut(s) 122, 466, 584, 677, 923
MflI RGATCY 1 cut(s) 723
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 2 cut(s) 12, 603
MlyI GAGTC 1 cut(s) 550
Mph1103I ATGCAT 2 cut(s) 142, 770
MseI TTAA 2 cut(s) 300, 801
MslI CAYNNNNRTG 1 cut(s) 870
MspA1I CMGCKG 3 cut(s) 229, 530, 953
MspR9I CCNGG 1 cut(s) 828
Mva1269I GAATGC 2 cut(s) 140, 770
MvaI CCWGG 1 cut(s) 828
MvnI CGCG 2 cut(s) 561, 785
MwoI GCNNNNNNNGC 8 cut(s) 104, 113, 330, 339, 348, 782, 793, 1022
NcoI CCATGG 1 cut(s) 420
NdeII GATC 4 cut(s) 207, 370, 667, 723
NheI GCTAGC 1 cut(s) 338
NlaIII CATG 3 cut(s) 140, 424, 512
NlaIV GGNNCC 1 cut(s) 886
NruI TCGCGA 1 cut(s) 561
NsiI ATGCAT 2 cut(s) 142, 770
NspI RCATGY 2 cut(s) 140, 512
PaeI GCATGC 1 cut(s) 140
PaeR7I CTCGAG 2 cut(s) 234, 648
PcsI WCGNNNNNNNCGW 2 cut(s) 474, 676
PctI GAATGC 2 cut(s) 140, 770
PfeI GAWTC 1 cut(s) 153
PkrI GCNGC 5 cut(s) 228, 231, 332, 952, 955
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
PshBI ATTAAT 1 cut(s) 801
Psp6I CCWGG 1 cut(s) 826
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 1 cut(s) 886
PspPI GGNCC 1 cut(s) 185
PsuI RGATCY 1 cut(s) 723
PvuII CAGCTG 2 cut(s) 229, 530
RruI TCGCGA 1 cut(s) 561
RsaI GTAC 7 cut(s) 405, 464, 534, 741, 837, 962, 969
RsaNI GTAC 7 cut(s) 404, 463, 533, 740, 836, 961, 968
RseI CAYNNNNRTG 1 cut(s) 870
SaqAI TTAA 2 cut(s) 300, 801
SatI GCNGC 5 cut(s) 227, 230, 331, 951, 954
Sau3AI GATC 4 cut(s) 207, 370, 667, 723
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 550
ScrFI CCNGG 1 cut(s) 828
SduI GDGCHC 1 cut(s) 508
SfaNI GCATC 3 cut(s) 777, 802, 862
Sfr274I CTCGAG 2 cut(s) 234, 648
SinI GGWCC 1 cut(s) 185
SlaI CTCGAG 2 cut(s) 234, 648
SmiMI CAYNNNNRTG 1 cut(s) 870
SmlI CTYRAG 4 cut(s) 234, 648, 710, 889
SmoI CTYRAG 4 cut(s) 234, 648, 710, 889
SphI GCATGC 1 cut(s) 140
Sse9I AATT 2 cut(s) 12, 603
SsiI CCGC 2 cut(s) 953, 972
SspMI CTAG 3 cut(s) 18, 104, 339
StyD4I CCNGG 1 cut(s) 826
StyI CCWWGG 2 cut(s) 420, 628
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 1 cut(s) 161
TaqI TCGA 4 cut(s) 144, 235, 649, 691
TasI AATT 2 cut(s) 12, 603
TatI WGTACW 3 cut(s) 462, 532, 739
TauI GCSGC 1 cut(s) 956
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 2 cut(s) 300, 801
Tru9I TTAA 2 cut(s) 300, 801
TseI GCWGC 4 cut(s) 226, 229, 330, 950
TspDTI ATGAA 3 cut(s) 213, 506, 777
VpaK11BI GGWCC 1 cut(s) 185
VspI ATTAAT 1 cut(s) 801
XapI RAATTY 1 cut(s) 12
XceI RCATGY 2 cut(s) 140, 512
XhoI CTCGAG 2 cut(s) 234, 648
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 3 cut(s) 18, 104, 339
Zsp2I ATGCAT 2 cut(s) 142, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.