Rmu_sc0030279.1_g000001

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030279.1
OG0000149
Physical Location & Seq
Forward (+)
1 .. 1740
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030279.1_g000001.1.cds

Sequence Viewer

Length: 717 bp
gtctcaaaattggggtttggatgcatgggcctgtctggagtctacaactctcctgttgctgatgaggatggaatctcaataataaaagaggctttcaataaaggaatcactttctttgacacagctgatgtatatggacctcatttgaatgaaattcttgtcggaaaggcgctgaagcagttgccaagagaaaaaattcaattagccacaaagtttggtattgttggaagagcggatcctcccggtgttacagccaagggtactccggagtatgtccgctcatgctgtgaggctagcttgaagcgtcttgatgtggactacgttgatctgtattatcaacatcgggtggacacttcggtgcctatagaggatactatgggtgagctgaagaaactggtggaagaaggaaaaataaaatatatcgggttatctgaagccagtccggacaccataaggagggctcatgcagttcatcccatcacggctctacaaatggagtggtccctctggactcgtgatattgaggaagaaattgttccactttgcagggagcttggcattggaatagttccatatagtcctcttggtcgtgggtttttcggtgggaaagcagttgtggaaagtgtgccttcaaatagtttcgtggtagatattcttcgtcatttattctgtccaatccgttgtcagaggatatgcagtaaattttatttttggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

238

Amino Acids

26.5

Weight (kDa)

6.26

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AccBSI CCGCTC 2 cut(s) 233, 279
AccI GTMKAC 1 cut(s) 42
AccIII TCCGGA 2 cut(s) 265, 442
AciI CCGC 2 cut(s) 233, 277
AclWI GGATC 2 cut(s) 230, 243
AcsI RAATTY 3 cut(s) 153, 195, 701
AcuI CTGAAG 3 cut(s) 194, 407, 453
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 456
AgsI TTSAA 5 cut(s) 97, 148, 200, 301, 633
AleI CACNNNNGTG 1 cut(s) 356
AluBI AGCT 4 cut(s) 125, 297, 385, 553
AluI AGCT 4 cut(s) 125, 297, 385, 553
Alw26I GTCTC 1 cut(s) 7
AlwI GGATC 2 cut(s) 230, 243
Aor13HI TCCGGA 2 cut(s) 265, 442
AoxI GGCC 1 cut(s) 28
ApoI RAATTY 3 cut(s) 153, 195, 701
Asp700I GAANNNNTTC 2 cut(s) 195, 534
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 3 cut(s) 28, 137, 501
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 392
AsuNHI GCTAGC 1 cut(s) 293
AvaII GGWCC 2 cut(s) 137, 501
BamHI GGATCC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 463
BarI GAAGNNNNNNTAC 2 cut(s) 639, 671
BauI CACGAG 1 cut(s) 513
BccI CCATC 2 cut(s) 62, 485
BceAI ACGGC 1 cut(s) 498
BciVI GTATCC 1 cut(s) 364
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 7
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 173
BfuI GTATCC 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 2 cut(s) 137, 501
BmgT120I GGNCC 3 cut(s) 28, 137, 501
BmiI GGNNCC 3 cut(s) 237, 360, 503
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 11
BmtI GCTAGC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 255
BsaWI WCCGGW 2 cut(s) 265, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse1I ACTGG 2 cut(s) 399, 438
BseAI TCCGGA 2 cut(s) 265, 442
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 3 cut(s) 26, 73, 472
BseLI CCNNNNNNNGG 1 cut(s) 456
BseNI ACTGG 2 cut(s) 399, 438
BshFI GGCC 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 358
BsiSI CCGG 3 cut(s) 243, 266, 443
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 1 cut(s) 456
BsmAI GTCTC 1 cut(s) 7
BsmFI GGGAC 1 cut(s) 487
BsnI GGCC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 463
Bsp13I TCCGGA 2 cut(s) 265, 442
Bsp143I GATC 2 cut(s) 235, 325
BspACI CCGC 2 cut(s) 233, 277
BspANI GGCC 1 cut(s) 30
BspEI TCCGGA 2 cut(s) 265, 442
BspLI GGNNCC 3 cut(s) 237, 360, 503
BspOI GCTAGC 1 cut(s) 297
BspPI GGATC 2 cut(s) 230, 243
BspQI GCTCTTC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 358
BsrBI CCGCTC 2 cut(s) 233, 279
BsrI ACTGG 2 cut(s) 399, 438
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 2 cut(s) 235, 325
BssSI CACGAG 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 513
Bst6I CTCTTC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 295
BstF5I GGATG 3 cut(s) 26, 73, 472
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 2 cut(s) 238, 328
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 2 cut(s) 235, 325
BstSCI CCNGG 1 cut(s) 241
BstSFI CTRYAG 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 30
BtsCI GGATG 3 cut(s) 26, 73, 472
Cac8I GCNNGC 1 cut(s) 295
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 3 cut(s) 28, 137, 501
CseI GACGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 261
CspCI CAANNNNNGTGG 4 cut(s) 196, 231, 479, 514
CviAII CATG 3 cut(s) 25, 282, 464
CviQI GTAC 1 cut(s) 261
DpnI GATC 2 cut(s) 237, 327
DpnII GATC 2 cut(s) 235, 325
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 463
Eco47I GGWCC 2 cut(s) 137, 501
Eco57I CTGAAG 3 cut(s) 194, 407, 453
EcoT14I CCWWGG 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 3 cut(s) 28, 285, 467
FalI AAGNNNNNCTT 2 cut(s) 613, 645
FaqI GGGAC 1 cut(s) 487
FatI CATG 3 cut(s) 24, 281, 463
FblI GTMKAC 1 cut(s) 42
FokI GGATG 3 cut(s) 33, 80, 459
FriOI GRGCYC 1 cut(s) 463
FspBI CTAG 1 cut(s) 294
GlaI GCGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 1 cut(s) 30
HapII CCGG 3 cut(s) 243, 266, 443
HgaI GACGC 1 cut(s) 293
HhaI GCGC 1 cut(s) 172
Hin1II CATG 3 cut(s) 28, 285, 467
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 4 cut(s) 39, 72, 105, 511
HpaII CCGG 3 cut(s) 243, 266, 443
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 3 cut(s) 43, 316, 349
Hpy188I TCNGA 3 cut(s) 164, 433, 687
Hpy188III TCNNGA 6 cut(s) 36, 266, 308, 443, 508, 515
Hpy8I GTNNAC 3 cut(s) 43, 316, 349
HpyAV CCTTC 2 cut(s) 398, 639
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 4 cut(s) 24, 467, 546, 696
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 3 cut(s) 28, 285, 467
HspAI GCGC 1 cut(s) 170
Kpn2I TCCGGA 2 cut(s) 265, 442
Kzo9I GATC 2 cut(s) 235, 325
LguI GCTCTTC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 550
LweI GCATC 1 cut(s) 11
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 237, 327
MbiI CCGCTC 2 cut(s) 233, 279
MboI GATC 2 cut(s) 235, 325
MboII GAAGA 5 cut(s) 240, 400, 413, 539, 647
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 463
MluCI AATT 6 cut(s) 8, 153, 195, 200, 531, 701
MlyI GAGTC 2 cut(s) 48, 505
MmeI TCCRAC 2 cut(s) 142, 205
Mph1103I ATGCAT 1 cut(s) 26
MroI TCCGGA 2 cut(s) 265, 442
MroXI GAANNNNTTC 2 cut(s) 195, 534
MslI CAYNNNNRTG 2 cut(s) 147, 356
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 3 cut(s) 243, 266, 443
MspR9I CCNGG 1 cut(s) 243
NciI CCSGG 1 cut(s) 243
NdeII GATC 2 cut(s) 235, 325
NheI GCTAGC 1 cut(s) 293
NlaIII CATG 3 cut(s) 28, 285, 467
NlaIV GGNNCC 3 cut(s) 237, 360, 503
NsiI ATGCAT 1 cut(s) 26
OliI CACNNNNGTG 1 cut(s) 356
PciSI GCTCTTC 1 cut(s) 223
PdmI GAANNNNTTC 2 cut(s) 195, 534
PfeI GAWTC 2 cut(s) 72, 105
PleI GAGTC 2 cut(s) 47, 505
PpsI GAGTC 2 cut(s) 47, 505
PspN4I GGNNCC 3 cut(s) 237, 360, 503
PspPI GGNCC 3 cut(s) 28, 137, 501
PsuI RGATCY 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 2 cut(s) 147, 356
SapI GCTCTTC 1 cut(s) 223
Sau3AI GATC 2 cut(s) 235, 325
Sau96I GGNCC 3 cut(s) 28, 137, 501
SchI GAGTC 2 cut(s) 48, 505
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 463
SetI ASST 6 cut(s) 127, 142, 299, 324, 387, 555
SfaNI GCATC 1 cut(s) 11
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 2 cut(s) 137, 501
SmiMI CAYNNNNRTG 2 cut(s) 147, 356
Sse9I AATT 6 cut(s) 8, 153, 195, 200, 531, 701
SsiI CCGC 2 cut(s) 233, 277
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 255
TaiI ACGT 1 cut(s) 324
TasI AATT 6 cut(s) 8, 153, 195, 200, 531, 701
TfiI GAWTC 2 cut(s) 72, 105
TspDTI ATGAA 2 cut(s) 165, 461
TspGWI ACGGA 1 cut(s) 668
VpaK11BI GGWCC 2 cut(s) 137, 501
XapI RAATTY 3 cut(s) 153, 195, 701
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 2 cut(s) 195, 534
XspI CTAG 1 cut(s) 294
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.