Rh3AG035300

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000149
Physical Location & Seq
Forward (+)
2360531 .. 2372615
12085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG035300.1

Sequence Viewer

Length: 507 bp
ATGTATATTGTAATAGTTCAACGGACGACAAAGACTGAAAATATTGATGCTAATGTCGGTTCCTGGAGAGTGAAACTCACTAAAGAACATATACAGGAGATATCTGATATGATACTCATCGATGCAGCGACAGGGAATAGAGTATCCGATAGTCCTTTCTCGGATAGGGTTTCTGGGTCGGATTCAACTTCCACGGATCATAGATTCATAATCCTAGGGCTACGTCACTCTATCTCTGGCGCACTACTCCACTTTGCTAATCTCAGTCCGCTTTATAACTGCGCTTCTAATGGCTACTTCAGTGTGCATGAACATCTCCTTGTGTTCAATCCCAGAGATACTGCTGCCGAGTTTGGATGGAATTCATGGCATGATCTAGTCTCTAGAGGTGCTTATCAAGTTTTCCAAGCTTGTTTGATTTGGAATTGGGAATTGGTGGAATCAAATCAATTAGGCAGTACAGAAATGTTCGAATTGACAACAAATAAATCTGTTGTCAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

168

Amino Acids

18.92

Weight (kDa)

5.55

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
AciI CCGC 1 cut(s) 269
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 361
AcuI CTGAAG 1 cut(s) 283
AfaI GTAC 1 cut(s) 460
AgsI TTSAA 3 cut(s) 20, 186, 328
AjnI CCWGG 1 cut(s) 62
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AluBI AGCT 1 cut(s) 410
AluI AGCT 1 cut(s) 410
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 125, 344
ApoI RAATTY 1 cut(s) 361
AspA2I CCTAGG 1 cut(s) 214
AspLEI GCGC 2 cut(s) 242, 284
AsuII TTCGAA 1 cut(s) 471
AvrII CCTAGG 1 cut(s) 214
BbvI GCAGC 2 cut(s) 137, 331
BccI CCATC 1 cut(s) 351
BciT130I CCWGG 1 cut(s) 64
BciVI GTATCC 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 3 cut(s) 215, 377, 384
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 2 cut(s) 126, 345
BlnI CCTAGG 1 cut(s) 214
BlsI GCNGC 2 cut(s) 127, 346
Bme1390I CCNGG 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 64
BmsI GCATC 2 cut(s) 37, 112
BplI GAGNNNNNCTC 2 cut(s) 60, 92
BpmI CTGGAG 1 cut(s) 85
Bpu14I TTCGAA 1 cut(s) 471
Bsa29I ATCGAT 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 192, 214
Bse8I GATNNNNATC 1 cut(s) 116
BseBI CCWGG 1 cut(s) 64
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 192, 214
BseGI GGATG 1 cut(s) 362
BseJI GATNNNNATC 1 cut(s) 116
BseMII CTCAG 1 cut(s) 277
BseXI GCAGC 2 cut(s) 137, 331
BshVI ATCGAT 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 385
Bsp119I TTCGAA 1 cut(s) 471
Bsp143I GATC 2 cut(s) 196, 373
BspACI CCGC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 276
BspDI ATCGAT 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 1 cut(s) 204
BspT104I TTCGAA 1 cut(s) 471
BssECI CCNNGG 2 cut(s) 192, 214
BssMI GATC 2 cut(s) 196, 373
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 64
BstBI TTCGAA 1 cut(s) 471
BstDEI CTNAG 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 362
BstHHI GCGC 2 cut(s) 242, 284
BstKTI GATC 2 cut(s) 199, 376
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 2 cut(s) 196, 373
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 137, 331
Bsu15I ATCGAT 1 cut(s) 120
BsuI GTATCC 1 cut(s) 154
BsuTUI ATCGAT 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 307
CfoI GCGC 2 cut(s) 242, 284
ClaI ATCGAT 1 cut(s) 120
Csp6I GTAC 1 cut(s) 459
CviAII CATG 3 cut(s) 308, 366, 371
CviJI RGCY 3 cut(s) 220, 294, 410
CviKI_1 RGCY 3 cut(s) 220, 294, 410
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 1 cut(s) 263
DpnI GATC 2 cut(s) 198, 375
DpnII GATC 2 cut(s) 196, 373
Eco130I CCWWGG 1 cut(s) 214
Eco32I GATATC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 62
EcoRV GATATC 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 3 cut(s) 311, 369, 374
FatI CATG 3 cut(s) 307, 365, 370
Fnu4HI GCNGC 2 cut(s) 126, 345
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 126, 345
FspBI CTAG 3 cut(s) 215, 377, 384
GlaI GCGC 2 cut(s) 241, 283
GluI GCNGC 2 cut(s) 126, 345
GsuI CTGGAG 1 cut(s) 85
HhaI GCGC 2 cut(s) 242, 284
Hin1II CATG 3 cut(s) 311, 369, 374
Hin6I GCGC 2 cut(s) 240, 282
HinP1I GCGC 2 cut(s) 240, 282
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 3 cut(s) 182, 204, 440
Hpy188I TCNGA 4 cut(s) 106, 148, 163, 181
Hpy188III TCNNGA 1 cut(s) 384
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 125, 307
HpyF3I CTNAG 1 cut(s) 263
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 3 cut(s) 311, 369, 374
HspAI GCGC 2 cut(s) 240, 282
Kzo9I GATC 2 cut(s) 196, 373
LpnPI CCDG 7 cut(s) 49, 76, 80, 117, 159, 222, 346
Lsp1109I GCAGC 2 cut(s) 137, 331
LweI GCATC 2 cut(s) 37, 112
MaeI CTAG 3 cut(s) 215, 377, 384
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 198, 375
MboI GATC 2 cut(s) 196, 373
MluCI AATT 5 cut(s) 361, 424, 431, 449, 473
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
NdeII GATC 2 cut(s) 196, 373
NlaIII CATG 3 cut(s) 311, 369, 374
NlaIV GGNNCC 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 224
NspV TTCGAA 1 cut(s) 471
PfeI GAWTC 3 cut(s) 182, 204, 440
PfoI TCCNGGA 1 cut(s) 62
PkrI GCNGC 2 cut(s) 127, 346
PsiI TTATAA 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 61
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
SatI GCNGC 2 cut(s) 126, 345
Sau3AI GATC 2 cut(s) 196, 373
ScrFI CCNGG 1 cut(s) 64
SetI ASST 3 cut(s) 226, 391, 412
SfaNI GCATC 2 cut(s) 37, 112
SfuI TTCGAA 1 cut(s) 471
Sse9I AATT 5 cut(s) 361, 424, 431, 449, 473
SsiI CCGC 1 cut(s) 269
SspI AATATT 1 cut(s) 43
SspMI CTAG 3 cut(s) 215, 377, 384
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 214
TaiI ACGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 120, 471
TasI AATT 5 cut(s) 361, 424, 431, 449, 473
TatI WGTACW 1 cut(s) 458
TfiI GAWTC 3 cut(s) 182, 204, 440
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 125, 344
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 3 cut(s) 196, 324, 354
TspGWI ACGGA 2 cut(s) 37, 209
TspRI CASTG 1 cut(s) 307
XapI RAATTY 1 cut(s) 361
XbaI TCTAGA 1 cut(s) 383
XmaJI CCTAGG 1 cut(s) 214
XspI CTAG 3 cut(s) 215, 377, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.