Rmu_sc0002575.1_g000021

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002575.1
OG0000149
Physical Location & Seq
Reverse (-)
97201 .. 99140
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002575.1_g000021.1.cds

Sequence Viewer

Length: 1041 bp
atggctgtccaaattcctagagtgaaactcgggagtgagggatttgaggtttccaagttgggacttggttgtttgggacttagtggatattacaatgctccactagctgaagaggctggcatatcaataatcaagcatgcattcgataatggaatcacgttctttgatacatcagatatttatggaccagaaactaatgaagttttgatcggaaaggcattgaagcagctgcctcgagataaggttcaggttgctacaaagtttggtattgtaaatatcaagaaaccacaagttacacttaatagcagtcctgagtatatacgctcctgctgcgaggctagcctgaagcgtcttgatgtggagtacattgatctttactatcagcaccgtgtagacccatcagtaccaatagaggataccatggaggaactaaagaagttggtgaaggaggggaagataaagtacatcggattatccgaagccagcccagaaacaataaagagggcacatgcagttcatcccattacagctgtacaaatggagtggtctctttggactcgcgacattgaggaagaaatcgtcccactttgcagggaacttggaatcgggatagtgccatatagccctcttggtcaaggatttttcggtggcagggcagttgtggaagctatacctgcaaagagtcatttggactggcttcctcgctttcaaggggagaacttggagaaaaacaaagacctttatgctgaaacacagaggttggctgaaaagcatggatgttcccctgcacaactcgcgctttcttgggttcttactcaaggcgaagatgttgtacctatccctgggactactaagataaagaatttggatgataatattggttccttgagagtgaaactcactaaagaagatatagaagagatttctgataaaatatctatcaacacagtggctgggaataatgcacccgatgctttttttcgctgctcatggaagtttgcaaatacaccaccagcaaaagatggcaaaataccttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

346

Amino Acids

38.29

Weight (kDa)

5.68

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 682
AccI GTMKAC 1 cut(s) 393
AccII CGCG 2 cut(s) 561, 797
AcsI RAATTY 2 cut(s) 12, 862
AcuI CTGAAG 2 cut(s) 129, 365
AfaI GTAC 5 cut(s) 365, 405, 464, 534, 834
AfiI CCNNNNNNNGG 1 cut(s) 842
AgsI TTSAA 2 cut(s) 223, 710
AjnI CCWGG 1 cut(s) 841
AluBI AGCT 4 cut(s) 107, 229, 530, 668
AluI AGCT 4 cut(s) 107, 229, 530, 668
Alw26I GTCTC 1 cut(s) 552
AlwNI CAGNNNCTG 1 cut(s) 953
Ama87I CYCGRG 2 cut(s) 29, 234
ApeKI GCWGC 4 cut(s) 226, 229, 330, 984
ApoI RAATTY 2 cut(s) 12, 862
AspLEI GCGC 1 cut(s) 799
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 454
AsuNHI GCTAGC 1 cut(s) 338
AvaI CYCGRG 2 cut(s) 29, 234
AvaII GGWCC 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 508
BarI GAAGNNNNNNTAC 4 cut(s) 446, 478, 816, 848
BbvI GCAGC 4 cut(s) 216, 238, 317, 971
BccI CCATC 2 cut(s) 406, 1016
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 843
BciVI GTATCC 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 552
BfaI CTAG 3 cut(s) 18, 104, 339
BfuAI ACCTGC 1 cut(s) 682
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 4 cut(s) 227, 230, 331, 985
BlsI GCNGC 4 cut(s) 228, 231, 332, 986
Bme1390I CCNGG 1 cut(s) 843
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 2 cut(s) 29, 234
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 883
BmrFI CCNGG 1 cut(s) 843
BmsI GCATC 1 cut(s) 961
BmtI GCTAGC 1 cut(s) 342
BplI GAGNNNNNCTC 4 cut(s) 12, 44, 882, 914
BpuEI CTTGAG 2 cut(s) 801, 907
BsaI GGTCTC 1 cut(s) 552
BsaJI CCNNGG 3 cut(s) 420, 841, 842
Bsc4I CCNNNNNNNGG 1 cut(s) 842
Bse1I ACTGG 1 cut(s) 698
BseBI CCWGG 1 cut(s) 843
BseDI CCNNGG 3 cut(s) 420, 841, 842
BseGI GGATG 3 cut(s) 517, 782, 874
BseLI CCNNNNNNNGG 1 cut(s) 842
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 698
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 4 cut(s) 216, 238, 317, 971
BseYI CCCAGC 1 cut(s) 953
BsgI GTGCAG 1 cut(s) 771
Bsh1236I CGCG 2 cut(s) 561, 797
BsiHKCI CYCGRG 2 cut(s) 29, 234
BslFI GGGAC 4 cut(s) 75, 90, 566, 859
BslI CCNNNNNNNGG 1 cut(s) 842
BsmAI GTCTC 1 cut(s) 552
BsmFI GGGAC 4 cut(s) 75, 90, 566, 859
BsmI GAATGC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 552
BsoBI CYCGRG 2 cut(s) 29, 234
Bsp1286I GDGCHC 1 cut(s) 508
Bsp1407I TGTACA 1 cut(s) 532
Bsp143I GATC 2 cut(s) 207, 370
Bsp19I CCATGG 1 cut(s) 420
Bsp68I TCGCGA 1 cut(s) 561
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 2 cut(s) 561, 797
BspLI GGNNCC 1 cut(s) 883
BspMI ACCTGC 1 cut(s) 682
BspOI GCTAGC 1 cut(s) 342
BspTNI GGTCTC 1 cut(s) 552
BsrGI TGTACA 1 cut(s) 532
BsrI ACTGG 1 cut(s) 698
BssECI CCNNGG 3 cut(s) 420, 841, 842
BssMI GATC 2 cut(s) 207, 370
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 843
Bst4CI ACNGT 2 cut(s) 389, 949
Bst6I CTCTTC 2 cut(s) 105, 912
BstAPI GCANNNNNTGC 1 cut(s) 971
BstAUI TGTACA 1 cut(s) 532
BstC8I GCNNGC 4 cut(s) 118, 138, 340, 484
BstDEI CTNAG 3 cut(s) 80, 312, 852
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 3 cut(s) 517, 782, 874
BstFNI CGCG 2 cut(s) 561, 797
BstHHI GCGC 1 cut(s) 799
BstKTI GATC 2 cut(s) 210, 373
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 2 cut(s) 207, 370
BstMWI GCNNNNNNNGC 7 cut(s) 104, 113, 330, 339, 674, 794, 971
BstNI CCWGG 1 cut(s) 843
BstNSI RCATGY 2 cut(s) 140, 512
BstSCI CCNGG 1 cut(s) 841
BstSLI GKGCMC 1 cut(s) 508
BstUI CGCG 2 cut(s) 561, 797
BstV1I GCAGC 4 cut(s) 216, 238, 317, 971
BsuI GTATCC 1 cut(s) 409
BtgI CCRYGG 1 cut(s) 420
BtsCI GGATG 3 cut(s) 517, 782, 874
BtsIMutI CAGTG 1 cut(s) 954
BtuMI TCGCGA 1 cut(s) 561
BveI ACCTGC 1 cut(s) 682
Cac8I GCNNGC 4 cut(s) 118, 138, 340, 484
CaiI CAGNNNCTG 1 cut(s) 953
CfoI GCGC 1 cut(s) 799
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 338
Csp6I GTAC 5 cut(s) 364, 404, 463, 533, 833
CspCI CAANNNNNGTGG 2 cut(s) 524, 559
CviAII CATG 5 cut(s) 137, 421, 509, 773, 990
CviQI GTAC 5 cut(s) 364, 404, 463, 533, 833
DdeI CTNAG 3 cut(s) 80, 312, 852
DpnI GATC 2 cut(s) 209, 372
DpnII GATC 2 cut(s) 207, 370
Eam1104I CTCTTC 2 cut(s) 105, 912
EarI CTCTTC 2 cut(s) 105, 912
Eco130I CCWWGG 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 552
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 2 cut(s) 129, 365
Eco88I CYCGRG 2 cut(s) 29, 234
EcoRII CCWGG 1 cut(s) 841
EcoT14I CCWWGG 1 cut(s) 420
EcoT22I ATGCAT 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 5 cut(s) 140, 424, 512, 776, 993
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 4 cut(s) 75, 90, 566, 859
FatI CATG 5 cut(s) 136, 420, 508, 772, 989
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 227, 230, 331, 985
FokI GGATG 3 cut(s) 504, 789, 881
Fsp4HI GCNGC 4 cut(s) 227, 230, 331, 985
FspBI CTAG 3 cut(s) 18, 104, 339
GlaI GCGC 1 cut(s) 798
GluI GCNGC 4 cut(s) 227, 230, 331, 985
GsaI CCCAGC 1 cut(s) 957
HgaI GACGC 1 cut(s) 338
HhaI GCGC 1 cut(s) 799
Hin1II CATG 5 cut(s) 140, 424, 512, 776, 993
Hin6I GCGC 1 cut(s) 797
HinP1I GCGC 1 cut(s) 797
HinfI GANTC 4 cut(s) 153, 556, 603, 682
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 5 cut(s) 175, 212, 470, 478, 928
Hpy188III TCNNGA 7 cut(s) 31, 236, 280, 311, 353, 560, 607
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 2 cut(s) 389, 949
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 7 cut(s) 140, 512, 591, 677, 788, 965, 1001
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 113, 330, 339, 674, 794, 971
HpyF3I CTNAG 3 cut(s) 80, 312, 852
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 5 cut(s) 140, 424, 512, 776, 993
HspAI GCGC 1 cut(s) 797
Kzo9I GATC 2 cut(s) 207, 370
LmnI GCTCC 2 cut(s) 103, 329
Lsp1109I GCAGC 4 cut(s) 216, 238, 317, 971
LweI GCATC 1 cut(s) 961
MaeI CTAG 3 cut(s) 18, 104, 339
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 292
MalI GATC 2 cut(s) 209, 372
MboI GATC 2 cut(s) 207, 370
MboII GAAGA 6 cut(s) 122, 466, 584, 836, 920, 929
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 2 cut(s) 12, 862
MlyI GAGTC 2 cut(s) 550, 691
Mph1103I ATGCAT 1 cut(s) 142
MseI TTAA 2 cut(s) 300, 1039
MspA1I CMGCKG 2 cut(s) 229, 530
MspR9I CCNGG 1 cut(s) 843
Mva1269I GAATGC 1 cut(s) 140
MvaI CCWGG 1 cut(s) 843
MvnI CGCG 2 cut(s) 561, 797
MwoI GCNNNNNNNGC 7 cut(s) 104, 113, 330, 339, 674, 794, 971
NcoI CCATGG 1 cut(s) 420
NdeII GATC 2 cut(s) 207, 370
NheI GCTAGC 1 cut(s) 338
NlaIII CATG 5 cut(s) 140, 424, 512, 776, 993
NlaIV GGNNCC 1 cut(s) 883
NruI TCGCGA 1 cut(s) 561
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 2 cut(s) 140, 512
PaeI GCATGC 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 234
PasI CCCWGGG 1 cut(s) 842
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 153, 603
PkrI GCNGC 4 cut(s) 228, 231, 332, 986
PleI GAGTC 2 cut(s) 550, 690
PpsI GAGTC 2 cut(s) 550, 690
Psp6I CCWGG 1 cut(s) 841
PspFI CCCAGC 1 cut(s) 953
PspGI CCWGG 1 cut(s) 841
PspN4I GGNNCC 1 cut(s) 883
PspPI GGNCC 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 953
PvuII CAGCTG 2 cut(s) 229, 530
RruI TCGCGA 1 cut(s) 561
RsaI GTAC 5 cut(s) 365, 405, 464, 534, 834
RsaNI GTAC 5 cut(s) 364, 404, 463, 533, 833
SaqAI TTAA 2 cut(s) 300, 1039
SatI GCNGC 4 cut(s) 227, 230, 331, 985
Sau3AI GATC 2 cut(s) 207, 370
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 2 cut(s) 550, 691
ScrFI CCNGG 1 cut(s) 843
SduI GDGCHC 1 cut(s) 508
SfaNI GCATC 1 cut(s) 961
Sfr274I CTCGAG 1 cut(s) 234
SinI GGWCC 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 234
SmlI CTYRAG 3 cut(s) 234, 816, 886
SmoI CTYRAG 3 cut(s) 234, 816, 886
SphI GCATGC 1 cut(s) 140
Sse9I AATT 2 cut(s) 12, 862
SspI AATATT 1 cut(s) 877
SspMI CTAG 3 cut(s) 18, 104, 339
StyD4I CCNGG 1 cut(s) 841
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 2 cut(s) 389, 949
TaiI ACGT 1 cut(s) 161
TaqI TCGA 2 cut(s) 144, 235
TasI AATT 2 cut(s) 12, 862
TatI WGTACW 3 cut(s) 363, 462, 532
TfiI GAWTC 2 cut(s) 153, 603
Tru1I TTAA 2 cut(s) 300, 1039
Tru9I TTAA 2 cut(s) 300, 1039
TscAI CASTG 1 cut(s) 954
TseI GCWGC 4 cut(s) 226, 229, 330, 984
TspDTI ATGAA 2 cut(s) 213, 506
TspRI CASTG 1 cut(s) 954
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 2 cut(s) 12, 862
XceI RCATGY 2 cut(s) 140, 512
XhoI CTCGAG 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 3 cut(s) 18, 104, 339
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.