Rorug05G0229300

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000149
Physical Location & Seq
Forward (+)
23843081 .. 23845993
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0229300.1

Sequence Viewer

Length: 720 bp
ATGGTATTCTCAGCCAACCCATTATCCCTCAGCGTCTCCGACCCTTTCTTCGACTCATGGCTCCGTCAAAACGGCTACCCTGAAATCCTCGAGCACCGACCCACCTCCGCCACACCCACCACCGTCTCCGCCGCCACAACCTCCACCTCTGCCGCCACCTCAACCTCCACCTCCACCTCCACCGCAAATGGGTTCTTCACCTCACTCTACTCCACCATCTGCATCCTCCTCTCTCTCTTCGCCACCAACCCCTTCGCCAAGCTCACCAACGAGGACCTCGCCGCCCCTACGCCGCCGTGGCAAGCCGGGTTTGTTGGGGACTACGAGTCCTACTCGTTCCCGGTGTCTAGCTCTCAGGCCCAGTTGAGGGTCCAGGAGAATGTGAAGAGATATGCTAGGAACTATGCTTGGTTGTTGGTCATCTTCTTCGCTTGTTCTCTATATCAAATGCCATTGGCTGCTGCTGGATTGATATTTTGTTTGGCACTATGGGAAATCTTTAAGCTCTGCGGTGGAATGTGGGGACTGGATCAGTACCCAACAATTCAGCAAACCATAATACGTGTTGCTCAATGTGTAGCTGCTGTTATCCTGATATATTCGGGTGTTCAAATGGCTCTATTCTCGGCACTTAGTGTCACTTATGCAGGAATGATACTGCACACCGGATTTCGGACGCTGACTCGTGCAAAGCAAGCTTCTCGTGGTAGATCGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

239

Amino Acids

26.14

Weight (kDa)

8.85

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 98 - 226 1.8e-13 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 108, 129, 132, 153, 183, 282, 293, 510
AclWI GGATC 1 cut(s) 537
AdeI CACNNNGTG 1 cut(s) 635
AfaI GTAC 1 cut(s) 536
AfiI CCNNNNNNNGG 4 cut(s) 189, 366, 367, 672
AflIII ACRYGT 1 cut(s) 562
AgsI TTSAA 1 cut(s) 611
AhdI GACNNNNNGTC 1 cut(s) 325
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 5 cut(s) 262, 351, 505, 581, 698
AluI AGCT 5 cut(s) 262, 351, 505, 581, 698
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 40, 130
AlwI GGATC 1 cut(s) 537
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 3 cut(s) 458, 461, 581
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspS9I GGNCC 3 cut(s) 274, 358, 370
AsuC2I CCSGG 2 cut(s) 307, 341
AsuHPI GGTGA 2 cut(s) 190, 256
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 2 cut(s) 274, 370
BauI CACGAG 2 cut(s) 684, 702
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 29
BbvI GCAGC 3 cut(s) 445, 448, 568
BccI CCATC 1 cut(s) 224
BceAI ACGGC 2 cut(s) 88, 280
BcgI CGANNNNNNTGC 2 cut(s) 683, 717
BciT130I CCWGG 1 cut(s) 374
BcnI CCSGG 2 cut(s) 307, 341
BcoDI GTCTC 2 cut(s) 40, 130
BfaI CTAG 2 cut(s) 348, 396
BglI GCCNNNNNGGC 1 cut(s) 298
BisI GCNGC 7 cut(s) 132, 153, 282, 293, 459, 462, 582
BlsI GCNGC 7 cut(s) 133, 154, 283, 294, 460, 463, 583
Bme1390I CCNGG 3 cut(s) 307, 341, 374
Bme18I GGWCC 2 cut(s) 274, 370
BmeRI GACNNNNNGTC 1 cut(s) 325
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 3 cut(s) 274, 358, 370
BmiI GGNNCC 2 cut(s) 62, 371
BmrFI CCNGG 3 cut(s) 307, 341, 374
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 1 cut(s) 231
BmuI ACTGGG 1 cut(s) 355
BplI GAGNNNNNCTC 2 cut(s) 317, 349
Bpu10I CCTNAGC 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 307, 341
BsaAI YACGTR 1 cut(s) 563
BsaJI CCNNGG 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 665
Bsc4I CCNNNNNNNGG 4 cut(s) 189, 366, 367, 672
Bse1I ACTGG 2 cut(s) 361, 531
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 4 cut(s) 189, 366, 367, 672
BseMII CTCAG 3 cut(s) 24, 43, 368
BseNI ACTGG 2 cut(s) 361, 531
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 3 cut(s) 445, 448, 568
BsgI GTGCAG 1 cut(s) 644
BshFI GGCC 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 3 cut(s) 306, 341, 666
BslFI GGGAC 2 cut(s) 332, 537
BslI CCNNNNNNNGG 4 cut(s) 189, 366, 367, 672
BsmAI GTCTC 2 cut(s) 40, 130
BsmBI CGTCTC 2 cut(s) 40, 130
BsmFI GGGAC 2 cut(s) 332, 537
BsnI GGCC 1 cut(s) 359
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 529, 710
BspACI CCGC 8 cut(s) 108, 129, 132, 153, 183, 282, 293, 510
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 3 cut(s) 23, 42, 367
BspLI GGNNCC 2 cut(s) 62, 371
BspPI GGATC 1 cut(s) 537
BsrI ACTGG 2 cut(s) 361, 531
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 2 cut(s) 529, 710
BssSI CACGAG 2 cut(s) 684, 702
Bst2BI CACGAG 2 cut(s) 684, 702
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 2 cut(s) 242, 380
BstBAI YACGTR 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 303, 696
BstDEI CTNAG 4 cut(s) 10, 29, 354, 632
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 2 cut(s) 532, 713
BstMAI GTCTC 2 cut(s) 40, 130
BstMBI GATC 2 cut(s) 529, 710
BstMWI GCNNNNNNNGC 2 cut(s) 298, 695
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 3 cut(s) 305, 339, 372
BstV1I GCAGC 3 cut(s) 445, 448, 568
BsuRI GGCC 1 cut(s) 359
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 1 cut(s) 222
Cac8I GCNNGC 2 cut(s) 303, 696
Cfr13I GGNCC 3 cut(s) 274, 358, 370
CseI GACGC 2 cut(s) 22, 685
Csp6I GTAC 1 cut(s) 535
CviAII CATG 1 cut(s) 57
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 4 cut(s) 10, 29, 354, 632
DpnI GATC 2 cut(s) 531, 712
DpnII GATC 2 cut(s) 529, 710
DraIII CACNNNGTG 1 cut(s) 635
DriI GACNNNNNGTC 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 242, 380
Eam1105I GACNNNNNGTC 1 cut(s) 325
EarI CTCTTC 2 cut(s) 242, 380
EciI GGCGGA 2 cut(s) 97, 118
Eco47I GGWCC 2 cut(s) 274, 370
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 372
Esp3I CGTCTC 2 cut(s) 40, 130
FaeI CATG 1 cut(s) 60
FaiI YATR 8 cut(s) 58, 393, 405, 442, 490, 557, 598, 645
FaqI GGGAC 2 cut(s) 332, 537
FatI CATG 1 cut(s) 56
Fnu4HI GCNGC 7 cut(s) 132, 153, 282, 293, 459, 462, 582
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 7 cut(s) 132, 153, 282, 293, 459, 462, 582
FspBI CTAG 2 cut(s) 348, 396
GluI GCNGC 7 cut(s) 132, 153, 282, 293, 459, 462, 582
HaeIII GGCC 1 cut(s) 359
HapII CCGG 3 cut(s) 306, 341, 666
HgaI GACGC 2 cut(s) 22, 685
Hin1II CATG 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 3 cut(s) 53, 326, 682
HpaII CCGG 3 cut(s) 306, 341, 666
HphI GGTGA 2 cut(s) 190, 256
Hpy188I TCNGA 2 cut(s) 40, 675
Hpy188III TCNNGA 2 cut(s) 592, 714
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 562
HpyCH4V TGCA 4 cut(s) 222, 647, 661, 689
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 695
HpyF3I CTNAG 4 cut(s) 10, 29, 354, 632
HpySE526I ACGT 1 cut(s) 562
Hsp92II CATG 1 cut(s) 60
Kzo9I GATC 2 cut(s) 529, 710
LmnI GCTCC 1 cut(s) 66
Lsp1109I GCAGC 3 cut(s) 445, 448, 568
LweI GCATC 1 cut(s) 231
MaeI CTAG 2 cut(s) 348, 396
MaeII ACGT 1 cut(s) 562
MaeIII GTNAC 1 cut(s) 637
MalI GATC 2 cut(s) 531, 712
MboI GATC 2 cut(s) 529, 710
MboII GAAGA 6 cut(s) 40, 187, 229, 397, 415, 418
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 543
MlyI GAGTC 3 cut(s) 47, 335, 676
MmeI TCCRAC 1 cut(s) 63
MseI TTAA 1 cut(s) 501
MspI CCGG 3 cut(s) 306, 341, 666
MspR9I CCNGG 3 cut(s) 307, 341, 374
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 2 cut(s) 298, 695
NciI CCSGG 2 cut(s) 307, 341
NdeII GATC 2 cut(s) 529, 710
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 2 cut(s) 62, 371
NmeAIII GCCGAG 1 cut(s) 605
NmuCI GTSAC 1 cut(s) 637
PaeR7I CTCGAG 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 372
PkrI GCNGC 7 cut(s) 133, 154, 283, 294, 460, 463, 583
PleI GAGTC 3 cut(s) 47, 334, 676
PpsI GAGTC 3 cut(s) 47, 334, 676
Ppu21I YACGTR 1 cut(s) 563
PpuMI RGGWCCY 1 cut(s) 274
Psp5II RGGWCCY 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 2 cut(s) 62, 371
PspPI GGNCC 3 cut(s) 274, 358, 370
PspPPI RGGWCCY 1 cut(s) 274
PspXI VCTCGAGB 1 cut(s) 89
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 7 cut(s) 132, 153, 282, 293, 459, 462, 582
Sau3AI GATC 2 cut(s) 529, 710
Sau96I GGNCC 3 cut(s) 274, 358, 370
SchI GAGTC 3 cut(s) 47, 335, 676
ScrFI CCNGG 3 cut(s) 307, 341, 374
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 231
Sfr274I CTCGAG 1 cut(s) 89
SinI GGWCC 2 cut(s) 274, 370
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 543
SsiI CCGC 8 cut(s) 108, 129, 132, 153, 183, 282, 293, 510
SspMI CTAG 2 cut(s) 348, 396
StyD4I CCNGG 3 cut(s) 305, 339, 372
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 565
TaqI TCGA 3 cut(s) 51, 90, 713
TasI AATT 1 cut(s) 543
TauI GCSGC 4 cut(s) 134, 155, 284, 295
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 3 cut(s) 458, 461, 581
Tsp45I GTSAC 1 cut(s) 637
TspGWI ACGGA 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 274, 370
XhoI CTCGAG 1 cut(s) 89
XspI CTAG 2 cut(s) 348, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.