Rmu_sc0002575.1_g000013

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002575.1
OG0000149
Physical Location & Seq
Reverse (-)
60481 .. 62057
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002575.1_g000013.1.cds

Sequence Viewer

Length: 840 bp
atggctgaggagaagggaatactgattccaaaagttaaacttggaactcagggatttgaggtctcaaaattggggtttggatgcatgggtctcactggggtctacaactctcctgtttctgatgaggatggaatctcaataataatagatgccttcaataaaggaatcactttctttgacacagctgatgcatatggacctcatacaaatgaagttcttattgggaaggcattgaagcaattgccaagagaaaaaattcaattagccacaaagtttggtattgctggaattatgcatcctcctagtattaaaatcacaggtactccggaatatgtccggtcttgctgtgaggctagcttgaagcgtcttgatgtggactacattgatctgtattatcaacatcgggtggacactacggtgcctatagaggaaactatgggtgagctgaagaaacttgtggaagaaggaaagataaagtacattggcttatctgaagccagtccggacacaataagaagggcacacgcagttcatcccataaccgctctacaaatggagtggtcactctggactcgtgatattgaggaagagattattccactttgcagggagcttggcattggaatagttccatatagtcctcttggtggtgggtttttcggtggcaaagcagttgctgaaagtgtgccttcaaatagttttgtgtcatcgcgtcctcggtttgtaggagagaacttgcagaaaaacaagactatttacaatcgactggaaaaccttgctgaaaagcaccaatgccttaccgctcaacttaccctagaacgacacttaattgtcctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

279

Amino Acids

30.89

Weight (kDa)

6.02

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 418
AccBSI CCGCTC 2 cut(s) 545, 803
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 712
AccIII TCCGGA 2 cut(s) 325, 502
AciI CCGC 2 cut(s) 543, 801
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 2 cut(s) 467, 513
AfaI GTAC 2 cut(s) 322, 479
AfiI CCNNNNNNNGG 1 cut(s) 647
AgsI TTSAA 5 cut(s) 157, 235, 260, 361, 693
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 4 cut(s) 185, 357, 445, 613
AluI AGCT 4 cut(s) 185, 357, 445, 613
Alw26I GTCTC 2 cut(s) 67, 95
AlwNI CAGNNNCTG 1 cut(s) 677
Aor13HI TCCGGA 2 cut(s) 325, 502
ApoI RAATTY 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 452
AsuNHI GCTAGC 1 cut(s) 353
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 523
BanI GGYRCC 1 cut(s) 418
BauI CACGAG 1 cut(s) 573
BbvCI CCTCAGC 1 cut(s) 6
BccI CCATC 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 67, 95
BfaI CTAG 3 cut(s) 303, 354, 815
BfmI CTRYAG 1 cut(s) 423
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 420
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 4 cut(s) 71, 139, 178, 304
BmtI GCTAGC 1 cut(s) 357
BmuI ACTGGG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 6
BsaI GGTCTC 2 cut(s) 67, 95
BsaJI CCNNGG 1 cut(s) 716
BsaWI WCCGGW 3 cut(s) 325, 336, 502
BsaXI ACNNNNNCTCC 2 cut(s) 307, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 647
Bse1I ACTGG 3 cut(s) 100, 498, 771
BseAI TCCGGA 2 cut(s) 325, 502
BseDI CCNNGG 1 cut(s) 716
BseGI GGATG 4 cut(s) 86, 133, 295, 532
BseLI CCNNNNNNNGG 1 cut(s) 647
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 3 cut(s) 100, 498, 771
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 712
BshNI GGYRCC 1 cut(s) 418
BsiSI CCGG 3 cut(s) 326, 337, 503
BslI CCNNNNNNNGG 1 cut(s) 647
BsmAI GTCTC 2 cut(s) 67, 95
Bso31I GGTCTC 2 cut(s) 67, 95
Bsp1286I GDGCHC 1 cut(s) 523
Bsp13I TCCGGA 2 cut(s) 325, 502
Bsp143I GATC 1 cut(s) 385
BspACI CCGC 2 cut(s) 543, 801
BspCNI CTCAG 1 cut(s) 61
BspEI TCCGGA 2 cut(s) 325, 502
BspFNI CGCG 1 cut(s) 712
BspLI GGNNCC 1 cut(s) 420
BspOI GCTAGC 1 cut(s) 357
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 2 cut(s) 67, 95
BsrBI CCGCTC 2 cut(s) 545, 803
BsrI ACTGG 3 cut(s) 100, 498, 771
BssECI CCNNGG 1 cut(s) 716
BssMI GATC 1 cut(s) 385
BssSI CACGAG 1 cut(s) 573
Bst2BI CACGAG 1 cut(s) 573
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 582
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 6, 48
BstF5I GGATG 4 cut(s) 86, 133, 295, 532
BstFNI CGCG 1 cut(s) 712
BstKTI GATC 1 cut(s) 388
BstMAI GTCTC 2 cut(s) 67, 95
BstMBI GATC 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 523
BstUI CGCG 1 cut(s) 712
BtgZI GCGATG 1 cut(s) 693
BtsCI GGATG 4 cut(s) 86, 133, 295, 532
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 355
CaiI CAGNNNCTG 1 cut(s) 677
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 2 cut(s) 353, 701
Csp6I GTAC 2 cut(s) 321, 478
CspCI CAANNNNNGTGG 4 cut(s) 256, 291, 539, 574
CviAII CATG 1 cut(s) 85
CviJI RGCY 9 cut(s) 5, 185, 266, 353, 357, 445, 486, 497, 613
CviKI_1 RGCY 9 cut(s) 5, 185, 266, 353, 357, 445, 486, 497, 613
CviQI GTAC 2 cut(s) 321, 478
DdeI CTNAG 2 cut(s) 6, 48
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco31I GGTCTC 2 cut(s) 67, 95
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 467, 513
EcoT22I ATGCAT 3 cut(s) 86, 193, 297
FaeI CATG 1 cut(s) 88
FalI AAGNNNNNCTT 4 cut(s) 24, 56, 673, 705
FatI CATG 1 cut(s) 84
FauNDI CATATG 1 cut(s) 193
FblI GTMKAC 1 cut(s) 102
FokI GGATG 4 cut(s) 93, 140, 282, 519
FspBI CTAG 3 cut(s) 303, 354, 815
HapII CCGG 3 cut(s) 326, 337, 503
HgaI GACGC 2 cut(s) 353, 701
Hin1II CATG 1 cut(s) 88
HinfI GANTC 4 cut(s) 25, 132, 165, 571
HpaII CCGG 3 cut(s) 326, 337, 503
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 3 cut(s) 103, 376, 409
Hpy188I TCNGA 3 cut(s) 121, 493, 839
Hpy188III TCNNGA 5 cut(s) 326, 368, 503, 568, 575
Hpy8I GTNNAC 3 cut(s) 103, 376, 409
HpyAV CCTTC 6 cut(s) 7, 163, 220, 458, 510, 699
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4V TGCA 5 cut(s) 84, 191, 295, 606, 739
HpyF3I CTNAG 2 cut(s) 6, 48
Hsp92II CATG 1 cut(s) 88
Kpn2I TCCGGA 2 cut(s) 325, 502
Kzo9I GATC 1 cut(s) 385
LmnI GCTCC 1 cut(s) 610
LweI GCATC 4 cut(s) 71, 139, 178, 304
MaeI CTAG 3 cut(s) 303, 354, 815
MaeIII GTNAC 1 cut(s) 561
MalI GATC 1 cut(s) 387
MbiI CCGCTC 2 cut(s) 545, 803
MboI GATC 1 cut(s) 385
MboII GAAGA 3 cut(s) 460, 473, 599
MfeI CAATTG 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 6 cut(s) 68, 239, 255, 260, 288, 828
MlyI GAGTC 1 cut(s) 565
MnlI CCTC 9 cut(s) 52, 118, 210, 309, 343, 421, 577, 651, 726
Mph1103I ATGCAT 3 cut(s) 86, 193, 297
MroI TCCGGA 2 cut(s) 325, 502
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 3 cut(s) 36, 309, 827
MslI CAYNNNNRTG 2 cut(s) 207, 416
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 3 cut(s) 326, 337, 503
MunI CAATTG 1 cut(s) 239
MvnI CGCG 1 cut(s) 712
NdeI CATATG 1 cut(s) 193
NdeII GATC 1 cut(s) 385
NheI GCTAGC 1 cut(s) 353
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 561
NsiI ATGCAT 3 cut(s) 86, 193, 297
OliI CACNNNNGTG 1 cut(s) 416
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 3 cut(s) 25, 132, 165
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 677
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 2 cut(s) 322, 479
RsaNI GTAC 2 cut(s) 321, 478
RseI CAYNNNNRTG 2 cut(s) 207, 416
SaqAI TTAA 3 cut(s) 36, 309, 827
Sau3AI GATC 1 cut(s) 385
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 565
SduI GDGCHC 1 cut(s) 523
SetI ASST 8 cut(s) 63, 187, 202, 322, 359, 447, 615, 777
SfaNI GCATC 4 cut(s) 71, 139, 178, 304
SfcI CTRYAG 1 cut(s) 423
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 207, 416
Sse9I AATT 6 cut(s) 68, 239, 255, 260, 288, 828
SsiI CCGC 2 cut(s) 543, 801
SspMI CTAG 3 cut(s) 303, 354, 815
TaaI ACNGT 1 cut(s) 418
TaqI TCGA 1 cut(s) 763
TasI AATT 6 cut(s) 68, 239, 255, 260, 288, 828
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 3 cut(s) 25, 132, 165
Tru1I TTAA 3 cut(s) 36, 309, 827
Tru9I TTAA 3 cut(s) 36, 309, 827
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 561
Tsp45I GTSAC 1 cut(s) 561
TspDTI ATGAA 2 cut(s) 225, 521
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 3 cut(s) 303, 354, 815
Zsp2I ATGCAT 3 cut(s) 86, 193, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.