Rmu_sc0012229.1_g000010

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012229.1
OG0000149
Physical Location & Seq
Reverse (-)
44292 .. 46655
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012229.1_g000010.1.cds

Sequence Viewer

Length: 678 bp
atgcacaatgttggcgtttttctattccacatactattattcccacctctaaaaggcatacatcaatctaaaattctcataccatggtgtagggagcgtggcattggaattgttccatattgtcctcttggctgtggttttttcgcaggcaaagcagttgtcgaaagtttggatccaaatgttcctgcggccgcacatcctcggctcactggagagaacttggagaagaacagacacatataccatgcaatagaaagccttgctacaaagcaccattgctctcctgcgcaactagcactgtcgtgggttctccaccgaggtgatgacgttgtaccaattcctgcctactgccccgcctgcacgcttgccacctgccgcaagcctttttgctacccctgcaaccaacgcacccagcgcccagcccaacgctcacctgctagcttgccagcctgccagcgcgccctgctcctagcctgcccctgcgctcacacatgggcgctgctggtttgcagcgtccctgctgcccctgcgctcgtactgcacacccagcgagcccgtgtagctgccagcccgccaagcaacgagcccgcgcccctgctgcccctcaactcactgcagccctgcgttccaacctttttctacgaccaggattgcaaaccggttgcaatcctagcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

225

Amino Acids

24.49

Weight (kDa)

8.85

Isoelectric Point (pI)

62.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 380, 442
Acc16I TGCGCA 1 cut(s) 288
Acc36I ACCTGC 2 cut(s) 380, 442
AccII CGCG 2 cut(s) 459, 590
AciI CCGC 6 cut(s) 188, 192, 354, 376, 572, 588
AclWI GGATC 2 cut(s) 167, 180
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 1 cut(s) 72
AfaI GTAC 2 cut(s) 333, 537
AfiI CCNNNNNNNGG 1 cut(s) 53
AgeI ACCGGT 1 cut(s) 658
AjnI CCWGG 1 cut(s) 645
AleI CACNNNNGTG 2 cut(s) 301, 318
AluBI AGCT 3 cut(s) 441, 563, 674
AluI AGCT 3 cut(s) 441, 563, 674
AlwI GGATC 2 cut(s) 167, 180
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 6 cut(s) 499, 510, 521, 563, 598, 616
ApoI RAATTY 1 cut(s) 72
ArsI GACNNNNNNTTYG 2 cut(s) 144, 176
AsiGI ACCGGT 1 cut(s) 658
AspLEI GCGC 8 cut(s) 289, 417, 459, 461, 485, 499, 532, 592
AsuHPI GGTGA 2 cut(s) 332, 423
AsuNHI GCTAGC 1 cut(s) 437
BamHI GGATCC 1 cut(s) 172
BanII GRGCYC 2 cut(s) 556, 588
BbvI GCAGC 6 cut(s) 486, 508, 522, 550, 585, 628
BciT130I CCWGG 1 cut(s) 647
BfaI CTAG 4 cut(s) 293, 438, 470, 671
BfmI CTRYAG 1 cut(s) 614
BfoI RGCGCY 2 cut(s) 418, 500
BfuAI ACCTGC 2 cut(s) 380, 442
BisI GCNGC 9 cut(s) 189, 192, 376, 500, 511, 522, 564, 599, 617
BlsI GCNGC 9 cut(s) 190, 193, 377, 501, 512, 523, 565, 600, 618
Bme1390I CCNGG 1 cut(s) 647
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 647
BmtI GCTAGC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 83, 200, 316
BsaWI WCCGGW 1 cut(s) 658
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 658
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 647
BseDI CCNNGG 3 cut(s) 83, 200, 316
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 214
BsePI GCGCGC 1 cut(s) 457
BseX3I CGGCCG 1 cut(s) 189
BseXI GCAGC 6 cut(s) 486, 508, 522, 550, 585, 628
BseYI CCCAGC 3 cut(s) 411, 418, 546
BsgI GTGCAG 2 cut(s) 343, 524
Bsh1236I CGCG 2 cut(s) 459, 590
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 191
BshTI ACCGGT 1 cut(s) 658
BsiEI CGRYCG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 556, 588
Bsp143I GATC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 83
BspACI CCGC 6 cut(s) 188, 192, 354, 376, 572, 588
BspANI GGCC 1 cut(s) 191
BspFNI CGCG 2 cut(s) 459, 590
BspLI GGNNCC 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 618
BspMI ACCTGC 2 cut(s) 380, 442
BspOI GCTAGC 1 cut(s) 441
BspPI GGATC 2 cut(s) 167, 180
BsrDI GCAATG 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 658
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 658
BssECI CCNNGG 3 cut(s) 83, 200, 316
BssHII GCGCGC 1 cut(s) 457
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 647
Bst4CI ACNGT 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 675
BstDSI CCRYGG 1 cut(s) 83
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 2 cut(s) 459, 590
BstH2I RGCGCY 2 cut(s) 418, 500
BstHHI GCGC 8 cut(s) 289, 417, 459, 461, 485, 499, 532, 592
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMCI CGRYCG 1 cut(s) 192
BstNI CCWGG 1 cut(s) 647
BstSCI CCNGG 1 cut(s) 645
BstSFI CTRYAG 1 cut(s) 614
BstUI CGCG 2 cut(s) 459, 590
BstV1I GCAGC 6 cut(s) 486, 508, 522, 550, 585, 628
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BstZI CGGCCG 1 cut(s) 189
BsuRI GGCC 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 83
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 611
BtsIMutI CAGTG 3 cut(s) 207, 296, 611
BveI ACCTGC 2 cut(s) 380, 442
CciNI GCGGCCGC 1 cut(s) 189
CfoI GCGC 8 cut(s) 289, 417, 459, 461, 485, 499, 532, 592
Cfr10I RCCGGY 1 cut(s) 658
CseI GACGC 1 cut(s) 502
Csp6I GTAC 2 cut(s) 332, 536
CspAI ACCGGT 1 cut(s) 658
CviAII CATG 3 cut(s) 84, 245, 492
CviQI GTAC 2 cut(s) 332, 536
DdeI CTNAG 1 cut(s) 675
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 189
EagI CGGCCG 1 cut(s) 189
EclXI CGGCCG 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 83
Eco24I GRGCYC 2 cut(s) 556, 588
Eco52I CGGCCG 1 cut(s) 189
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 645
EcoT14I CCWWGG 1 cut(s) 83
EcoT38I GRGCYC 2 cut(s) 556, 588
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 3 cut(s) 87, 248, 495
FaiI YATR 9 cut(s) 32, 59, 80, 85, 118, 239, 241, 246, 493
FaqI GGGAC 1 cut(s) 500
FatI CATG 3 cut(s) 83, 244, 491
FauI CCCGC 3 cut(s) 361, 579, 595
Fnu4HI GCNGC 9 cut(s) 189, 192, 376, 500, 511, 522, 564, 599, 617
FokI GGATG 1 cut(s) 183
FriOI GRGCYC 2 cut(s) 556, 588
Fsp4HI GCNGC 9 cut(s) 189, 192, 376, 500, 511, 522, 564, 599, 617
FspBI CTAG 4 cut(s) 293, 438, 470, 671
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 8 cut(s) 288, 416, 458, 460, 484, 498, 531, 591
GluI GCNGC 9 cut(s) 189, 192, 376, 500, 511, 522, 564, 599, 617
GsaI CCCAGC 3 cut(s) 415, 422, 550
GsuI CTGGAG 1 cut(s) 231
HaeII RGCGCY 2 cut(s) 418, 500
HaeIII GGCC 1 cut(s) 191
HapII CCGG 1 cut(s) 659
HgaI GACGC 1 cut(s) 502
HhaI GCGC 8 cut(s) 289, 417, 459, 461, 485, 499, 532, 592
Hin1II CATG 3 cut(s) 87, 248, 495
Hin6I GCGC 8 cut(s) 287, 415, 457, 459, 483, 497, 530, 590
HinP1I GCGC 8 cut(s) 287, 415, 457, 459, 483, 497, 530, 590
HpaII CCGG 1 cut(s) 659
HphI GGTGA 2 cut(s) 332, 423
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 9 cut(s) 4, 248, 360, 399, 510, 541, 616, 654, 665
HpyF3I CTNAG 1 cut(s) 675
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 3 cut(s) 87, 248, 495
HspAI GCGC 8 cut(s) 287, 415, 457, 459, 483, 497, 530, 590
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 94, 471
Lsp1109I GCAGC 6 cut(s) 486, 508, 522, 550, 585, 628
MaeI CTAG 4 cut(s) 293, 438, 470, 671
MaeII ACGT 1 cut(s) 327
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 238
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 556, 588
MluCI AATT 3 cut(s) 72, 108, 336
MmeI TCCRAC 1 cut(s) 653
MnlI CCTC 5 cut(s) 57, 135, 210, 311, 614
MslI CAYNNNNRTG 2 cut(s) 301, 318
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 1 cut(s) 647
MvaI CCWGG 1 cut(s) 647
MvnI CGCG 2 cut(s) 459, 590
NcoI CCATGG 1 cut(s) 83
NdeII GATC 1 cut(s) 172
NheI GCTAGC 1 cut(s) 437
NlaIII CATG 3 cut(s) 87, 248, 495
NlaIV GGNNCC 1 cut(s) 174
NmeAIII GCCGAG 1 cut(s) 181
NotI GCGGCCGC 1 cut(s) 189
NsbI TGCGCA 1 cut(s) 288
OliI CACNNNNGTG 2 cut(s) 301, 318
PaqCI CACCTGC 2 cut(s) 380, 442
PauI GCGCGC 1 cut(s) 457
PinAI ACCGGT 1 cut(s) 658
PkrI GCNGC 9 cut(s) 190, 193, 377, 501, 512, 523, 565, 600, 618
Psp6I CCWGG 1 cut(s) 645
PspFI CCCAGC 3 cut(s) 411, 418, 546
PspGI CCWGG 1 cut(s) 645
PspN4I GGNNCC 1 cut(s) 174
PstI CTGCAG 1 cut(s) 618
PsuI RGATCY 1 cut(s) 172
PteI GCGCGC 1 cut(s) 457
RsaI GTAC 2 cut(s) 333, 537
RsaNI GTAC 2 cut(s) 332, 536
RseI CAYNNNNRTG 2 cut(s) 301, 318
SatI GCNGC 9 cut(s) 189, 192, 376, 500, 511, 522, 564, 599, 617
Sau3AI GATC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 647
SduI GDGCHC 2 cut(s) 556, 588
SetI ASST 9 cut(s) 49, 322, 330, 374, 436, 443, 565, 635, 676
SfcI CTRYAG 1 cut(s) 614
SmiMI CAYNNNNRTG 2 cut(s) 301, 318
Sse9I AATT 3 cut(s) 72, 108, 336
SsiI CCGC 6 cut(s) 188, 192, 354, 376, 572, 588
SspMI CTAG 4 cut(s) 293, 438, 470, 671
StyD4I CCNGG 1 cut(s) 645
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 162
TasI AATT 3 cut(s) 72, 108, 336
TauI GCSGC 3 cut(s) 191, 194, 378
TscAI CASTG 3 cut(s) 214, 303, 618
TseI GCWGC 6 cut(s) 499, 510, 521, 563, 598, 616
TspRI CASTG 3 cut(s) 214, 303, 618
XagI CCTNNNNNAGG 1 cut(s) 51
XapI RAATTY 1 cut(s) 72
XspI CTAG 4 cut(s) 293, 438, 470, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.