Rmu_co8296899.1_g000001

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8296899.1
OG0000149
Physical Location & Seq
Reverse (-)
2 .. 813
812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8296899.1_g000001.1.cds

Sequence Viewer

Length: 508 bp
atgggtctcactggggtctacaactctcctgtttctgatgaggatggaatctcaataataatagatgccttcaataaaggaatcactttctttgacacagctgatgcatatggacctcatacaaatgaagttcttattgggaaggcattgaagcaattgccaagagaaaaaattcaattagccacaaagtttggtattgctggaattatgcatcctcctagtattaaaatcacaggtactccggaatatgtccggtcttgctgtgaggctagcttgaagcgtcttgatgtggactacattgatctgtattatcaacatcgggtggacactacggtgcctatagaggaaactatgggtgagctgaagaaacttgtggaagaaggaaagataaagtacattggcttatctgaagccagtccggacacaataagaagggcacacgcagttcatcccataaccgctctacaaatggagtggtcactctggactcgtgatattgaggaagaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

169

Amino Acids

18.94

Weight (kDa)

5.14

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AccBSI CCGCTC 1 cut(s) 461
AccI GTMKAC 1 cut(s) 18
AccIII TCCGGA 2 cut(s) 241, 418
AciI CCGC 1 cut(s) 459
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 2 cut(s) 383, 429
AfaI GTAC 2 cut(s) 238, 395
AgsI TTSAA 4 cut(s) 73, 151, 176, 277
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AleI CACNNNNGTG 1 cut(s) 332
AluBI AGCT 3 cut(s) 101, 273, 361
AluI AGCT 3 cut(s) 101, 273, 361
Alw26I GTCTC 1 cut(s) 11
Aor13HI TCCGGA 2 cut(s) 241, 418
ApoI RAATTY 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 368
AsuNHI GCTAGC 1 cut(s) 269
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 439
BanI GGYRCC 1 cut(s) 334
BauI CACGAG 1 cut(s) 489
BccI CCATC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 219, 270
BfmI CTRYAG 1 cut(s) 339
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 336
BmrI ACTGGG 1 cut(s) 21
BmsI GCATC 3 cut(s) 55, 94, 220
BmtI GCTAGC 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 11
BsaWI WCCGGW 3 cut(s) 241, 252, 418
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bse1I ACTGG 2 cut(s) 16, 414
BseAI TCCGGA 2 cut(s) 241, 418
BseGI GGATG 3 cut(s) 49, 211, 448
BseNI ACTGG 2 cut(s) 16, 414
BseSI GKGCMC 1 cut(s) 439
BshNI GGYRCC 1 cut(s) 334
BsiSI CCGG 3 cut(s) 242, 253, 419
BsmAI GTCTC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 439
Bsp13I TCCGGA 2 cut(s) 241, 418
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 1 cut(s) 459
BspEI TCCGGA 2 cut(s) 241, 418
BspLI GGNNCC 1 cut(s) 336
BspOI GCTAGC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 461
BsrI ACTGG 2 cut(s) 16, 414
BssMI GATC 1 cut(s) 301
BssSI CACGAG 1 cut(s) 489
Bst2BI CACGAG 1 cut(s) 489
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 271
BstF5I GGATG 3 cut(s) 49, 211, 448
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 439
BtsCI GGATG 3 cut(s) 49, 211, 448
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 113
CseI GACGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 237, 394
CspCI CAANNNNNGTGG 4 cut(s) 172, 207, 455, 490
CviJI RGCY 7 cut(s) 101, 182, 269, 273, 361, 402, 413
CviKI_1 RGCY 7 cut(s) 101, 182, 269, 273, 361, 402, 413
CviQI GTAC 2 cut(s) 237, 394
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 2 cut(s) 383, 429
EcoT22I ATGCAT 2 cut(s) 109, 213
FaiI YATR 8 cut(s) 109, 111, 120, 209, 249, 341, 353, 455
FauNDI CATATG 1 cut(s) 109
FblI GTMKAC 1 cut(s) 18
FokI GGATG 3 cut(s) 56, 198, 435
FspBI CTAG 2 cut(s) 219, 270
HapII CCGG 3 cut(s) 242, 253, 419
HgaI GACGC 1 cut(s) 269
HinfI GANTC 3 cut(s) 48, 81, 487
HpaII CCGG 3 cut(s) 242, 253, 419
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 3 cut(s) 19, 292, 325
Hpy188I TCNGA 2 cut(s) 37, 409
Hpy188III TCNNGA 5 cut(s) 242, 284, 419, 484, 491
Hpy8I GTNNAC 3 cut(s) 19, 292, 325
HpyAV CCTTC 4 cut(s) 79, 136, 374, 426
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 2 cut(s) 107, 211
Kpn2I TCCGGA 2 cut(s) 241, 418
Kzo9I GATC 1 cut(s) 301
LpnPI CCDG 8 cut(s) 42, 186, 219, 255, 266, 427, 432, 469
LweI GCATC 3 cut(s) 55, 94, 220
MaeI CTAG 2 cut(s) 219, 270
MaeIII GTNAC 1 cut(s) 477
MalI GATC 1 cut(s) 303
MbiI CCGCTC 1 cut(s) 461
MboI GATC 1 cut(s) 301
MboII GAAGA 2 cut(s) 376, 389
MfeI CAATTG 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 4 cut(s) 155, 171, 176, 204
MlyI GAGTC 1 cut(s) 481
MnlI CCTC 6 cut(s) 34, 126, 225, 259, 337, 493
Mph1103I ATGCAT 2 cut(s) 109, 213
MroI TCCGGA 2 cut(s) 241, 418
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 2 cut(s) 123, 332
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 3 cut(s) 242, 253, 419
MunI CAATTG 1 cut(s) 155
NdeI CATATG 1 cut(s) 109
NdeII GATC 1 cut(s) 301
NheI GCTAGC 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 477
NsiI ATGCAT 2 cut(s) 109, 213
OliI CACNNNNGTG 1 cut(s) 332
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 2 cut(s) 48, 81
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 2 cut(s) 238, 395
RsaNI GTAC 2 cut(s) 237, 394
RseI CAYNNNNRTG 2 cut(s) 123, 332
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 481
SduI GDGCHC 1 cut(s) 439
SetI ASST 5 cut(s) 103, 118, 238, 275, 363
SfaNI GCATC 3 cut(s) 55, 94, 220
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 2 cut(s) 123, 332
Sse9I AATT 4 cut(s) 155, 171, 176, 204
SsiI CCGC 1 cut(s) 459
SspMI CTAG 2 cut(s) 219, 270
TaaI ACNGT 1 cut(s) 334
TasI AATT 4 cut(s) 155, 171, 176, 204
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 2 cut(s) 48, 81
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 477
Tsp45I GTSAC 1 cut(s) 477
TspDTI ATGAA 2 cut(s) 141, 437
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 1 cut(s) 171
XmiI GTMKAC 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 2 cut(s) 219, 270
Zsp2I ATGCAT 2 cut(s) 109, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.