Rorug02G0632600

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000149
Physical Location & Seq
Forward (+)
74719369 .. 74720365
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0632600.1

Sequence Viewer

Length: 510 bp
ATGGCTGCTTTTAAAACAAGTTTGTTCTGGCTCGTCATTTTCATCTCTCTTGGGAACTCGTTGGTTTTCTCAGCTTTTGAGTTCCAGGTTGGTGGAACTCAAGGTTGGGTCGTCCCTCCAACCAATGACAGCAAGGTCTACAACGACTGGGCCTCAGAAAACAGGTTCCAAATCGGCAACGCCATCCGTTTTAAGTACAAGAAGGACTCGGTGATGGAGGTGACGGAAGAGGACTACAAGAAGTGCAATTCAAGTCATCCCAACTTCTTCTCCAACAATGGAAACACTGTCTACAGGTTTGACCATTCGGGGTCGTTTTACTTCATCAGTGGGGCAGCCGGACACTGCGAAAAGGGGCAGAGGATGATCGTTAAGGTCATGTCGACCGATGAGGAGTCTCCGTTGGGCAAAAAATCGGCTGGTTATCGTGCTGCGGTTTACGAGCTTGGAGTGTCCAAACTTGTGTTTGTTCAGTTTGTTTTGTTCTATGTTGCTTCTCTTGTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

169

Amino Acids

19.05

Weight (kDa)

8.48

Isoelectric Point (pI)

17.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 44 - 120 2.5e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AccI GTMKAC 3 cut(s) 138, 291, 383
AciI CCGC 1 cut(s) 434
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 1 cut(s) 252
AjnI CCWGG 1 cut(s) 84
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 2 cut(s) 74, 445
AluI AGCT 2 cut(s) 74, 445
Alw26I GTCTC 1 cut(s) 402
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 3 cut(s) 5, 335, 431
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 223, 232
BbvI GCAGC 2 cut(s) 347, 418
BccI CCATC 2 cut(s) 191, 208
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 1 cut(s) 508
BfmI CTRYAG 1 cut(s) 292
BisI GCNGC 3 cut(s) 6, 336, 432
BlsI GCNGC 3 cut(s) 7, 337, 433
Bme1390I CCNGG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 86
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 84
BsaXI ACNNNNNCTCC 4 cut(s) 254, 284, 386, 416
Bse1I ACTGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 86
BseGI GGATG 3 cut(s) 183, 256, 369
BseMII CTCAG 2 cut(s) 84, 168
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 2 cut(s) 347, 418
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 1 cut(s) 152
BsiEI CGRYCG 1 cut(s) 387
BsiSI CCGG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 366
BspACI CCGC 1 cut(s) 434
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 83, 167
BspLI GGNNCC 1 cut(s) 167
BsrI ACTGG 1 cut(s) 152
BssMI GATC 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 222
BstDEI CTNAG 2 cut(s) 70, 154
BstF5I GGATG 3 cut(s) 183, 256, 369
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 1 cut(s) 366
BstMCI CGRYCG 1 cut(s) 387
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 347, 418
BstXI CCANNNNNNTGG 1 cut(s) 92
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 3 cut(s) 183, 256, 369
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 3 cut(s) 285, 334, 343
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 379
CviJI RGCY 7 cut(s) 5, 31, 74, 152, 338, 419, 445
CviKI_1 RGCY 7 cut(s) 5, 31, 74, 152, 338, 419, 445
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 70, 154
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
DraI TTTAAA 1 cut(s) 13
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 382
FaiI YATR 2 cut(s) 380, 489
FaqI GGGAC 1 cut(s) 98
FatI CATG 1 cut(s) 378
FblI GTMKAC 3 cut(s) 138, 291, 383
Fnu4HI GCNGC 3 cut(s) 6, 336, 432
FokI GGATG 3 cut(s) 170, 243, 376
Fsp4HI GCNGC 3 cut(s) 6, 336, 432
FspBI CTAG 1 cut(s) 508
GluI GCNGC 3 cut(s) 6, 336, 432
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 339
Hin1II CATG 1 cut(s) 382
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 2 cut(s) 206, 395
HpaII CCGG 1 cut(s) 339
HphI GGTGA 2 cut(s) 223, 232
Hpy166II GTNNAC 4 cut(s) 139, 292, 384, 439
Hpy188I TCNGA 1 cut(s) 157
Hpy8I GTNNAC 4 cut(s) 139, 292, 384, 439
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 70, 154
Hsp92II CATG 1 cut(s) 382
Kzo9I GATC 1 cut(s) 366
LpnPI CCDG 8 cut(s) 13, 71, 98, 133, 148, 280, 352, 405
Lsp1109I GCAGC 2 cut(s) 347, 418
MaeI CTAG 1 cut(s) 508
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 2 cut(s) 239, 259
MluCI AATT 1 cut(s) 247
MlyI GAGTC 2 cut(s) 200, 404
MmeI TCCRAC 2 cut(s) 143, 297
MnlI CCTC 6 cut(s) 126, 163, 211, 223, 354, 385
MseI TTAA 3 cut(s) 12, 192, 372
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
NdeII GATC 1 cut(s) 366
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 220
PkrI GCNGC 3 cut(s) 7, 337, 433
PleI GAGTC 2 cut(s) 200, 403
PpsI GAGTC 2 cut(s) 200, 403
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SalI GTCGAC 1 cut(s) 382
SaqAI TTAA 3 cut(s) 12, 192, 372
SatI GCNGC 3 cut(s) 6, 336, 432
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 2 cut(s) 200, 404
ScrFI CCNGG 1 cut(s) 86
SetI ASST 9 cut(s) 76, 90, 106, 138, 167, 222, 299, 378, 447
SfcI CTRYAG 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 1 cut(s) 247
SsiI CCGC 1 cut(s) 434
SspMI CTAG 1 cut(s) 508
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 1 cut(s) 383
TaqII GACCGA 1 cut(s) 401
TasI AATT 1 cut(s) 247
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 3 cut(s) 12, 192, 372
Tru9I TTAA 3 cut(s) 12, 192, 372
TscAI CASTG 3 cut(s) 292, 334, 350
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 5, 335, 431
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 31, 313
TspGWI ACGGA 3 cut(s) 176, 239, 390
TspRI CASTG 3 cut(s) 292, 334, 350
XmiI GTMKAC 3 cut(s) 138, 291, 383
XspI CTAG 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.