FvH4_6g03001

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000149
Physical Location & Seq
Forward (+)
1680437 .. 1683649
3213 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03001.t1

Sequence Viewer

Length: 1014 bp
ATGGCTGAGGAGAAAATAGGCCAAATTCCAAGAGTGAAACTTGGTAGTGACGGATTTGAGGTTTCCAAGTTGGGATTTGGGTGTATGGGACTTAGTGGAATCTATAGTGTGCCACTGCCTGAAGAGTTTGGCATATCAATGATCAAGTATGAATTTGACAGAGGAATAACATTCTTCGATACATCTGATGTTTATGGACCACATGCTAATGAAGTTTTGATCGGAAAGATTGAGCCTGAGAAAGTTGTAATTAACGGCACTCCTGAGTATGTCCGGTGCTGCTGCGAAGCTAGCCTGAAGCGTCTGGAGGTGGACTACATTGATCTTTACTATCAGCACCGGATTGACACATCTGTTCCCATAGAGGAAACTATGGAGGAACTGAAGAAGCTTGTGAAAGAGGGGAAAATAAAGTACATTGGATTATCTGAAGCTAGTCCAGAAACAATAAGGAGGGCACATGCAGCTCATCCCATTACTGCAGTACAAATGGAGTGGTCTCTTTGGACTCGCGACATCGAGGAACAAATCGTTCCACTTTGCAGGGAACTTGGGATTGGGATAGTTCCATACAGCCCTCTTGGTCTTGGATTTTTCGGTGGCAGGGGAGTTGTGGAACCTATACCAGCAAGTAGTCCTCTGCGATGGACTCCTCGCTTTCAAGGAGACAACTTGGAGAAAAACAAGGACATTTATGCTAAAACACAGAAGTTGGCTGAAAAGCATGGATGCTCCCCTGCACAACTAGCCCTTGCTTGGGTTCTTAGTCAAGGTGATGGTGTTGTACCAATTCCCCGAACAACTAAGATAAAAACCCTGGATGATAATACTGCTTCCTTGGGAGTGAAACTAACTGAAGAAGATATGAAAGAGATTTCCAATATGATACCTACCTGCAGTGCCGTAGCAGGAAATAATGCGCCGGATGTTTTCATCAGCTGCTCATGGAGATTTGCAAACACACCAGCAGAGCAAAATATAATCTTAAATGTTTGTATGCATGAAAACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

338

Amino Acids

37.41

Weight (kDa)

5.19

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 294 2e-65 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 902
AccII CGCG 1 cut(s) 513
AcsI RAATTY 2 cut(s) 24, 152
AcuI CTGAAG 5 cut(s) 141, 317, 404, 450, 876
AfaI GTAC 3 cut(s) 416, 486, 786
AfiI CCNNNNNNNGG 2 cut(s) 756, 757
AgsI TTSAA 1 cut(s) 662
AjnI CCWGG 1 cut(s) 816
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
AluBI AGCT 5 cut(s) 290, 391, 434, 467, 939
AluI AGCT 5 cut(s) 290, 391, 434, 467, 939
Alw26I GTCTC 2 cut(s) 504, 660
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 4 cut(s) 279, 282, 464, 939
ApoI RAATTY 2 cut(s) 24, 152
AspLEI GCGC 1 cut(s) 922
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 785
AsuNHI GCTAGC 1 cut(s) 290
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 460
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 4 cut(s) 266, 269, 476, 926
BccI CCATC 2 cut(s) 639, 770
BceAI ACGGC 2 cut(s) 271, 887
BciT130I CCWGG 1 cut(s) 818
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 2 cut(s) 504, 660
BfaI CTAG 3 cut(s) 291, 435, 746
BfmI CTRYAG 3 cut(s) 103, 480, 895
BfuAI ACCTGC 1 cut(s) 902
BisI GCNGC 4 cut(s) 280, 283, 465, 940
BlsI GCNGC 4 cut(s) 281, 284, 466, 941
Bme1390I CCNGG 1 cut(s) 818
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 618
BmrFI CCNGG 1 cut(s) 818
BmsI GCATC 1 cut(s) 719
BmtI GCTAGC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 326
Bpu10I CCTNAGC 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 504
BsaJI CCNNGG 2 cut(s) 816, 837
BsaWI WCCGGW 2 cut(s) 273, 339
Bsc4I CCNNNNNNNGG 2 cut(s) 756, 757
Bse1I ACTGG 1 cut(s) 1009
BseBI CCWGG 1 cut(s) 818
BseDI CCNNGG 2 cut(s) 816, 837
BseGI GGATG 4 cut(s) 469, 734, 826, 931
BseLI CCNNNNNNNGG 2 cut(s) 756, 757
BseMII CTCAG 2 cut(s) 228, 255
BseNI ACTGG 1 cut(s) 1009
BseRI GAGGAG 2 cut(s) 23, 642
BseSI GKGCMC 1 cut(s) 460
BseXI GCAGC 4 cut(s) 266, 269, 476, 926
BsgI GTGCAG 1 cut(s) 723
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 1 cut(s) 21
BsiSI CCGG 3 cut(s) 274, 340, 923
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 756, 757
BsmAI GTCTC 2 cut(s) 504, 660
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 1 cut(s) 21
Bso31I GGTCTC 1 cut(s) 504
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 3 cut(s) 141, 219, 322
Bsp68I TCGCGA 1 cut(s) 513
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 2 cut(s) 229, 256
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 1 cut(s) 618
BspMAI CTGCAG 2 cut(s) 484, 899
BspMI ACCTGC 1 cut(s) 902
BspOI GCTAGC 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 504
BsrI ACTGG 1 cut(s) 1009
BssECI CCNNGG 2 cut(s) 816, 837
BssMI GATC 3 cut(s) 141, 219, 322
BssT1I CCWWGG 1 cut(s) 837
Bst2UI CCWGG 1 cut(s) 818
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 6 cut(s) 6, 92, 237, 264, 764, 804
BstF5I GGATG 4 cut(s) 469, 734, 826, 931
BstFNI CGCG 1 cut(s) 513
BstHHI GCGC 1 cut(s) 922
BstKTI GATC 3 cut(s) 144, 222, 325
BstMAI GTCTC 2 cut(s) 504, 660
BstMBI GATC 3 cut(s) 141, 219, 322
BstMWI GCNNNNNNNGC 3 cut(s) 291, 464, 746
BstNI CCWGG 1 cut(s) 818
BstNSI RCATGY 2 cut(s) 206, 464
BstSCI CCNGG 1 cut(s) 816
BstSFI CTRYAG 3 cut(s) 103, 480, 895
BstSLI GKGCMC 1 cut(s) 460
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 4 cut(s) 266, 269, 476, 926
BsuRI GGCC 1 cut(s) 21
BtgZI GCGATG 1 cut(s) 658
BtsCI GGATG 4 cut(s) 469, 734, 826, 931
BtsI GCAGTG 2 cut(s) 113, 904
BtsIMutI CAGTG 2 cut(s) 113, 904
BtuMI TCGCGA 1 cut(s) 513
BveI ACCTGC 1 cut(s) 902
Cac8I GCNNGC 1 cut(s) 292
CfoI GCGC 1 cut(s) 922
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 290
Csp6I GTAC 3 cut(s) 415, 485, 785
CspCI CAANNNNNGTGG 2 cut(s) 476, 511
CviAII CATG 5 cut(s) 203, 461, 725, 945, 1001
CviQI GTAC 3 cut(s) 415, 485, 785
DdeI CTNAG 6 cut(s) 6, 92, 237, 264, 764, 804
DpnI GATC 3 cut(s) 143, 221, 324
DpnII GATC 3 cut(s) 141, 219, 322
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 837
Eco31I GGTCTC 1 cut(s) 504
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 5 cut(s) 141, 317, 404, 450, 876
EcoRII CCWGG 1 cut(s) 816
EcoT14I CCWWGG 1 cut(s) 837
EcoT22I ATGCAT 1 cut(s) 1002
ErhI CCWWGG 1 cut(s) 837
FaeI CATG 5 cut(s) 206, 464, 728, 948, 1004
FaqI GGGAC 1 cut(s) 102
FatI CATG 5 cut(s) 202, 460, 724, 944, 1000
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 4 cut(s) 280, 283, 465, 940
FokI GGATG 4 cut(s) 456, 741, 833, 938
Fsp4HI GCNGC 4 cut(s) 280, 283, 465, 940
FspBI CTAG 3 cut(s) 291, 435, 746
GlaI GCGC 1 cut(s) 921
GluI GCNGC 4 cut(s) 280, 283, 465, 940
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 1 cut(s) 21
HapII CCGG 3 cut(s) 274, 340, 923
HgaI GACGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 922
Hin1II CATG 5 cut(s) 206, 464, 728, 948, 1004
Hin6I GCGC 1 cut(s) 920
HinP1I GCGC 1 cut(s) 920
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 3 cut(s) 99, 508, 649
HpaII CCGG 3 cut(s) 274, 340, 923
HphI GGTGA 1 cut(s) 785
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 3 cut(s) 187, 224, 430
Hpy188III TCNNGA 4 cut(s) 263, 305, 440, 512
Hpy8I GTNNAC 1 cut(s) 313
HpyCH4V TGCA 7 cut(s) 464, 482, 543, 740, 897, 956, 1000
HpyF10VI GCNNNNNNNGC 3 cut(s) 291, 464, 746
HpyF3I CTNAG 6 cut(s) 6, 92, 237, 264, 764, 804
Hsp92II CATG 5 cut(s) 206, 464, 728, 948, 1004
HspAI GCGC 1 cut(s) 920
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 3 cut(s) 141, 219, 322
LmnI GCTCC 1 cut(s) 737
Lsp1109I GCAGC 4 cut(s) 266, 269, 476, 926
LweI GCATC 1 cut(s) 719
MaeI CTAG 3 cut(s) 291, 435, 746
MaeIII GTNAC 1 cut(s) 47
MalI GATC 3 cut(s) 143, 221, 324
MboI GATC 3 cut(s) 141, 219, 322
MboII GAAGA 5 cut(s) 134, 166, 397, 869, 872
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 4 cut(s) 24, 152, 249, 789
MlyI GAGTC 2 cut(s) 502, 643
Mph1103I ATGCAT 1 cut(s) 1002
MseI TTAA 2 cut(s) 252, 986
MslI CAYNNNNRTG 2 cut(s) 137, 207
MspA1I CMGCKG 1 cut(s) 939
MspI CCGG 3 cut(s) 274, 340, 923
MspR9I CCNGG 1 cut(s) 818
MvaI CCWGG 1 cut(s) 818
MvnI CGCG 1 cut(s) 513
MwoI GCNNNNNNNGC 3 cut(s) 291, 464, 746
NdeII GATC 3 cut(s) 141, 219, 322
NheI GCTAGC 1 cut(s) 290
NlaIII CATG 5 cut(s) 206, 464, 728, 948, 1004
NlaIV GGNNCC 1 cut(s) 618
NmuCI GTSAC 1 cut(s) 47
NruI TCGCGA 1 cut(s) 513
NsiI ATGCAT 1 cut(s) 1002
NspI RCATGY 2 cut(s) 206, 464
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 4 cut(s) 281, 284, 466, 941
PleI GAGTC 2 cut(s) 502, 643
PpsI GAGTC 2 cut(s) 502, 643
Psp6I CCWGG 1 cut(s) 816
PspGI CCWGG 1 cut(s) 816
PspN4I GGNNCC 1 cut(s) 618
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 2 cut(s) 484, 899
PvuII CAGCTG 1 cut(s) 939
RruI TCGCGA 1 cut(s) 513
RsaI GTAC 3 cut(s) 416, 486, 786
RsaNI GTAC 3 cut(s) 415, 485, 785
RseI CAYNNNNRTG 2 cut(s) 137, 207
SaqAI TTAA 2 cut(s) 252, 986
SatI GCNGC 4 cut(s) 280, 283, 465, 940
Sau3AI GATC 3 cut(s) 141, 219, 322
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 2 cut(s) 502, 643
ScrFI CCNGG 1 cut(s) 818
SduI GDGCHC 1 cut(s) 460
SfaNI GCATC 1 cut(s) 719
SfcI CTRYAG 3 cut(s) 103, 480, 895
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 137, 207
Sse9I AATT 4 cut(s) 24, 152, 249, 789
SspMI CTAG 3 cut(s) 291, 435, 746
StyD4I CCNGG 1 cut(s) 816
StyI CCWWGG 1 cut(s) 837
TaqI TCGA 2 cut(s) 177, 519
TasI AATT 4 cut(s) 24, 152, 249, 789
TatI WGTACW 2 cut(s) 414, 484
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 2 cut(s) 252, 986
Tru9I TTAA 2 cut(s) 252, 986
TscAI CASTG 2 cut(s) 120, 904
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 4 cut(s) 279, 282, 464, 939
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 4 cut(s) 165, 225, 881, 922
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 2 cut(s) 120, 904
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 2 cut(s) 24, 152
XceI RCATGY 2 cut(s) 206, 464
XspI CTAG 3 cut(s) 291, 435, 746
Zsp2I ATGCAT 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.