Rorug02G0633100

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000149
Physical Location & Seq
Reverse (-)
74750146 .. 74751987
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0633100.1

Sequence Viewer

Length: 750 bp
ATGGCAACAGCTGCGCTGCTCATCGAAGCCAACGCATTAATGAAATTGAAGCAAAACACCCTATTACGCACTTTTCGTCCTCTTCCATCAAAACCAGTCACATTAACGTTAAGAAATCAACGTTGCTTTGCTCCCAGAATATTTAAGAACCCTAAACCTCAATGTTTCTTGCCCTCCGACTCTAAATCAGGCCATCCCTCTCAGTCACAGTTCCACGATGTTCTTAAAGACAATTGGCCAGCGGCAGCAAACCCTAATTTCACAGTCGCCCTTAATAAGTTATGGGAAAAGTGTCACAAGGCATTGAGGAAACCAGCAATGGCTGCCGTGCTGTTGGGTTTGTTAGTCATGTACAACCCCAAGTCAGCAGCGTTGGCTGCTCTGGTGGGTCGGGTCGGTGGAAGCTTGACACCCACGTGTCAAACAAGTGTTGTCAAGCTCCAGCTTCAGGTGGTTATACCAAAGTTCTCTAGAGCGGCGGCACAGCAATGCTTTGATCAACTTGTGTTCAGAGAGTGGGTTAGATATGATGAAGAGACCATTGTCAATGTGGACAATATAAAACTCATAGCACAACAAATAGGAAAAAGGGATAACTTGTTTTTGCTTTTACTTGCTGCTGTTGGGAAGTCTAAGTTGCCCACTATCATTGACAGCAGTGACTTGAAGAAAGTGATGGAAGAGCTTGCATCCATTGATCCCAGCAGACGAGGAGTAGAGGTACTGTGGATGTCACGCCCCGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

249

Amino Acids

27.77

Weight (kDa)

9.88

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 156 - 243 2.9e-09 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 476
AciI CCGC 3 cut(s) 242, 476, 479
AclI AACGTT 2 cut(s) 107, 121
AclWI GGATC 1 cut(s) 692
AcoI YGGCCR 1 cut(s) 236
AcsI RAATTY 1 cut(s) 743
AcuI CTGAAG 1 cut(s) 431
AcvI CACGTG 1 cut(s) 417
AfaI GTAC 2 cut(s) 353, 723
AfiI CCNNNNNNNGG 1 cut(s) 448
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 2 cut(s) 49, 667
AleI CACNNNNGTG 1 cut(s) 415
AluBI AGCT 5 cut(s) 11, 405, 439, 445, 685
AluI AGCT 5 cut(s) 11, 405, 439, 445, 685
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 1 cut(s) 692
AoxI GGCC 2 cut(s) 190, 236
ApeKI GCWGC 7 cut(s) 11, 16, 245, 323, 368, 377, 617
ApoI RAATTY 1 cut(s) 743
AseI ATTAAT 1 cut(s) 38
AspLEI GCGC 1 cut(s) 16
BalI TGGCCA 1 cut(s) 238
BbrPI CACGTG 1 cut(s) 417
BbvI GCAGC 6 cut(s) 3, 257, 310, 364, 380, 604
BccI CCATC 3 cut(s) 94, 201, 670
BceAI ACGGC 1 cut(s) 311
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 1 cut(s) 471
BmsI GCATC 1 cut(s) 698
BoxI GACNNNNGTC 1 cut(s) 542
BpmI CTGGAG 1 cut(s) 425
BsaAI YACGTR 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 530
BsaXI ACNNNNNCTCC 2 cut(s) 705, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 2 cut(s) 324, 494
BseGI GGATG 3 cut(s) 193, 689, 735
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMI GCAATG 2 cut(s) 324, 494
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 726
BseXI GCAGC 6 cut(s) 3, 257, 310, 364, 380, 604
BseYI CCCAGC 1 cut(s) 701
BshFI GGCC 2 cut(s) 192, 238
BslI CCNNNNNNNGG 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 530
BsnI GGCC 2 cut(s) 192, 238
Bso31I GGTCTC 1 cut(s) 530
Bsp1407I TGTACA 1 cut(s) 351
Bsp143I GATC 2 cut(s) 496, 697
BspACI CCGC 3 cut(s) 242, 476, 479
BspANI GGCC 2 cut(s) 192, 238
BspCNI CTCAG 1 cut(s) 214
BspPI GGATC 1 cut(s) 692
BspQI GCTCTTC 1 cut(s) 675
BspTNI GGTCTC 1 cut(s) 530
BsrBI CCGCTC 1 cut(s) 476
BsrDI GCAATG 2 cut(s) 324, 494
BsrGI TGTACA 1 cut(s) 351
BsrI ACTGG 1 cut(s) 95
BssMI GATC 2 cut(s) 496, 697
Bst4CI ACNGT 3 cut(s) 210, 265, 726
Bst6I CTCTTC 3 cut(s) 87, 528, 675
BstAPI GCANNNNNTGC 2 cut(s) 11, 323
BstAUI TGTACA 1 cut(s) 351
BstBAI YACGTR 1 cut(s) 417
BstC8I GCNNGC 2 cut(s) 240, 687
BstDEI CTNAG 2 cut(s) 201, 633
BstF5I GGATG 3 cut(s) 193, 689, 735
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 2 cut(s) 499, 700
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 2 cut(s) 496, 697
BstMWI GCNNNNNNNGC 4 cut(s) 11, 323, 374, 377
BstPAI GACNNNNGTC 1 cut(s) 542
BstV1I GCAGC 6 cut(s) 3, 257, 310, 364, 380, 604
BsuRI GGCC 2 cut(s) 192, 238
BtsCI GGATG 3 cut(s) 193, 689, 735
BtsI GCAGTG 1 cut(s) 664
BtsIMutI CAGTG 1 cut(s) 664
Cac8I GCNNGC 2 cut(s) 240, 687
CfoI GCGC 1 cut(s) 16
Csp6I GTAC 2 cut(s) 352, 722
CspCI CAANNNNNGTGG 2 cut(s) 631, 666
CviAII CATG 1 cut(s) 349
CviQI GTAC 2 cut(s) 352, 722
DdeI CTNAG 2 cut(s) 201, 633
DpnI GATC 2 cut(s) 498, 699
DpnII GATC 2 cut(s) 496, 697
EaeI YGGCCR 1 cut(s) 236
Eam1104I CTCTTC 3 cut(s) 87, 528, 675
EarI CTCTTC 3 cut(s) 87, 528, 675
Eco31I GGTCTC 1 cut(s) 530
Eco57I CTGAAG 1 cut(s) 431
Eco72I CACGTG 1 cut(s) 417
FaeI CATG 1 cut(s) 352
FaiI YATR 6 cut(s) 283, 350, 458, 528, 560, 569
FatI CATG 1 cut(s) 348
FbaI TGATCA 1 cut(s) 496
FokI GGATG 3 cut(s) 180, 676, 742
FspBI CTAG 1 cut(s) 471
GlaI GCGC 1 cut(s) 15
GsaI CCCAGC 1 cut(s) 705
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 2 cut(s) 192, 238
HhaI GCGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 403
HinfI GANTC 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 2 cut(s) 178, 512
Hpy188III TCNNGA 1 cut(s) 471
Hpy8I GTNNAC 1 cut(s) 553
HpyCH4III ACNGT 3 cut(s) 210, 265, 726
HpyCH4IV ACGT 3 cut(s) 107, 121, 416
HpyCH4V TGCA 1 cut(s) 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 323, 374, 377
HpyF3I CTNAG 2 cut(s) 201, 633
HpySE526I ACGT 3 cut(s) 107, 121, 416
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 2 cut(s) 496, 697
LguI GCTCTTC 1 cut(s) 675
LmnI GCTCC 2 cut(s) 136, 444
LpnPI CCDG 9 cut(s) 108, 148, 174, 252, 327, 368, 434, 455, 715
Lsp1109I GCAGC 6 cut(s) 3, 257, 310, 364, 380, 604
LweI GCATC 1 cut(s) 698
MaeI CTAG 1 cut(s) 471
MaeII ACGT 3 cut(s) 107, 121, 416
MaeIII GTNAC 5 cut(s) 97, 204, 293, 659, 732
MalI GATC 2 cut(s) 498, 699
MbiI CCGCTC 1 cut(s) 476
MboI GATC 2 cut(s) 496, 697
MboII GAAGA 4 cut(s) 74, 545, 679, 692
MfeI CAATTG 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 238
MluCI AATT 4 cut(s) 44, 232, 256, 743
MluNI TGGCCA 1 cut(s) 238
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 7 cut(s) 90, 168, 184, 208, 300, 704, 712
Mox20I TGGCCA 1 cut(s) 238
MscI TGGCCA 1 cut(s) 238
MseI TTAA 6 cut(s) 38, 104, 110, 144, 225, 273
MslI CAYNNNNRTG 2 cut(s) 415, 487
Msp20I TGGCCA 1 cut(s) 238
MspA1I CMGCKG 2 cut(s) 11, 242
MunI CAATTG 1 cut(s) 232
MwoI GCNNNNNNNGC 4 cut(s) 11, 323, 374, 377
NdeII GATC 2 cut(s) 496, 697
NlaIII CATG 1 cut(s) 352
NmuCI GTSAC 5 cut(s) 97, 204, 293, 659, 732
OliI CACNNNNGTG 1 cut(s) 415
PciSI GCTCTTC 1 cut(s) 675
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PleI GAGTC 1 cut(s) 173
PmaCI CACGTG 1 cut(s) 417
PmlI CACGTG 1 cut(s) 417
PpsI GAGTC 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 417
PshAI GACNNNNGTC 1 cut(s) 542
PshBI ATTAAT 1 cut(s) 38
Psp1406I AACGTT 2 cut(s) 107, 121
PspCI CACGTG 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 701
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 2 cut(s) 353, 723
RsaNI GTAC 2 cut(s) 352, 722
RseI CAYNNNNRTG 2 cut(s) 415, 487
SapI GCTCTTC 1 cut(s) 675
SaqAI TTAA 6 cut(s) 38, 104, 110, 144, 225, 273
Sau3AI GATC 2 cut(s) 496, 697
SchI GAGTC 1 cut(s) 173
SfaNI GCATC 1 cut(s) 698
SmiMI CAYNNNNRTG 2 cut(s) 415, 487
Sse9I AATT 4 cut(s) 44, 232, 256, 743
SsiI CCGC 3 cut(s) 242, 476, 479
SspI AATATT 1 cut(s) 141
SspMI CTAG 1 cut(s) 471
TaaI ACNGT 3 cut(s) 210, 265, 726
TaiI ACGT 3 cut(s) 110, 124, 419
TaqI TCGA 1 cut(s) 24
TasI AATT 4 cut(s) 44, 232, 256, 743
TatI WGTACW 1 cut(s) 351
TauI GCSGC 3 cut(s) 245, 479, 482
Tru1I TTAA 6 cut(s) 38, 104, 110, 144, 225, 273
Tru9I TTAA 6 cut(s) 38, 104, 110, 144, 225, 273
TscAI CASTG 1 cut(s) 664
TseFI GTSAC 5 cut(s) 97, 204, 293, 659, 732
TseI GCWGC 7 cut(s) 11, 16, 245, 323, 368, 377, 617
Tsp45I GTSAC 5 cut(s) 97, 204, 293, 659, 732
TspDTI ATGAA 2 cut(s) 56, 546
TspRI CASTG 1 cut(s) 664
VspI ATTAAT 1 cut(s) 38
XapI RAATTY 1 cut(s) 743
XbaI TCTAGA 1 cut(s) 470
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.