Rh3DG035900

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000149
Physical Location & Seq
Forward (+)
2399868 .. 2402068
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG035900.1

Sequence Viewer

Length: 756 bp
ATGCATCCTCCTAGTATTAAAATCACAGGTACTCCGGAATATGTCCGGTCTTGCTGTGAGGCTAGCTTGAAGCGTCTTGATGTGGACTACATTGATCTGTATTATCAACATCGGGTGGACACTACGGTGCCTATAGAGGAAACTATGAGTGAGCTGAAGAAACTTGTGGAAGAAGGAAAGATAAAGTACATTGGCTTATCTGAAGCCAGTCCGGACACAATAAGAAGGGCACACGCAGTTCATCCCATAACCGCTCTACAAATGGAGTGGTCACTCTGGACTCGTGATATTGAGGAAGAGATTATTCCACTTTGCAGGGAGCTTGGCATTGGAATAGTTCCATATAGTCCTCTTGGTGGTGGGTTTTTCGGTGGCAAAGCAGTTGCTGAAAGTGTGCCTTCAAATAGTTTTGTGTCATCGCGTCCTCGGTTTGTAGGAGAGAACTTGCAGAAAAACAAGACTATTTACAATCGACTGGAAAACCTAGCTGAAAAGCACCAATGCCTTACCGCTCAACTAGCATTAGCATGGGTTCTCCACCAAGGAGATGATGTTGTACCTATCCCAGGGACAACAAAGATAAAGAACCTGGATGCAAATATTGGCTCCTTGAAGGTGAAACTTGGGGAGGAAGACGTGAAAGAAGTTTCTGGTGCTGTACCACTAGACCAAGTCGCCGGTGGTAGAACTTGTGGAAACCTGATGCATTTGCAATGGAAATTCGCCAACACTCCTCCAAAAGAATCTAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

251

Amino Acids

27.84

Weight (kDa)

6.19

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 7 - 217 1.1e-57 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AccBSI CCGCTC 2 cut(s) 254, 512
AccII CGCG 1 cut(s) 421
AccIII TCCGGA 2 cut(s) 34, 211
AciI CCGC 2 cut(s) 252, 510
AcsI RAATTY 1 cut(s) 719
AcuI CTGAAG 2 cut(s) 176, 222
AfaI GTAC 4 cut(s) 31, 188, 558, 660
AfiI CCNNNNNNNGG 2 cut(s) 356, 566
AgsI TTSAA 3 cut(s) 70, 402, 613
AjiI CACGTC 1 cut(s) 637
AjnI CCWGG 2 cut(s) 565, 588
AleI CACNNNNGTG 1 cut(s) 125
AluBI AGCT 4 cut(s) 66, 154, 322, 488
AluI AGCT 4 cut(s) 66, 154, 322, 488
AlwNI CAGNNNCTG 1 cut(s) 386
Aor13HI TCCGGA 2 cut(s) 34, 211
ApoI RAATTY 1 cut(s) 719
AsuHPI GGTGA 1 cut(s) 628
AsuNHI GCTAGC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 127
BauI CACGAG 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 639
BciT130I CCWGG 2 cut(s) 567, 590
BfaI CTAG 5 cut(s) 12, 63, 485, 518, 665
BfmI CTRYAG 1 cut(s) 132
BglII AGATCT 1 cut(s) 750
Bme1390I CCNGG 2 cut(s) 567, 590
BmgBI CACGTC 1 cut(s) 637
BmiI GGNNCC 2 cut(s) 129, 607
BmrFI CCNGG 2 cut(s) 567, 590
BmsI GCATC 3 cut(s) 13, 583, 693
BmtI GCTAGC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 639
BsaJI CCNNGG 4 cut(s) 425, 541, 565, 566
BsaWI WCCGGW 3 cut(s) 34, 45, 211
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 537, 567
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 566
Bse118I RCCGGY 1 cut(s) 677
Bse1I ACTGG 2 cut(s) 207, 480
Bse3DI GCAATG 1 cut(s) 719
BseAI TCCGGA 2 cut(s) 34, 211
BseBI CCWGG 2 cut(s) 567, 590
BseDI CCNNGG 4 cut(s) 425, 541, 565, 566
BseGI GGATG 3 cut(s) 4, 241, 598
BseLI CCNNNNNNNGG 2 cut(s) 356, 566
BseMI GCAATG 1 cut(s) 719
BseNI ACTGG 2 cut(s) 207, 480
BseRI GAGGAG 1 cut(s) 723
BseSI GKGCMC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 421
BshNI GGYRCC 1 cut(s) 127
BsiSI CCGG 4 cut(s) 35, 46, 212, 678
BslFI GGGAC 1 cut(s) 583
BslI CCNNNNNNNGG 2 cut(s) 356, 566
BsmFI GGGAC 1 cut(s) 583
Bsp1286I GDGCHC 1 cut(s) 232
Bsp13I TCCGGA 2 cut(s) 34, 211
Bsp143I GATC 2 cut(s) 94, 750
BspACI CCGC 2 cut(s) 252, 510
BspEI TCCGGA 2 cut(s) 34, 211
BspFNI CGCG 1 cut(s) 421
BspLI GGNNCC 2 cut(s) 129, 607
BspOI GCTAGC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 127
BsrBI CCGCTC 2 cut(s) 254, 512
BsrDI GCAATG 1 cut(s) 719
BsrFI RCCGGY 1 cut(s) 677
BsrI ACTGG 2 cut(s) 207, 480
BssAI RCCGGY 1 cut(s) 677
BssECI CCNNGG 4 cut(s) 425, 541, 565, 566
BssMI GATC 2 cut(s) 94, 750
BssSI CACGAG 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 541
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 567, 590
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 747
BstENI CCTNNNNNAGG 1 cut(s) 564
BstF5I GGATG 3 cut(s) 4, 241, 598
BstFNI CGCG 1 cut(s) 421
BstKTI GATC 2 cut(s) 97, 753
BstMBI GATC 2 cut(s) 94, 750
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstNI CCWGG 2 cut(s) 567, 590
BstSCI CCNGG 2 cut(s) 565, 588
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 232
BstUI CGCG 1 cut(s) 421
BstV2I GAAGAC 1 cut(s) 639
BstX2I RGATCY 1 cut(s) 750
BstYI RGATCY 1 cut(s) 750
BtgZI GCGATG 1 cut(s) 402
BtrI CACGTC 1 cut(s) 637
BtsCI GGATG 3 cut(s) 4, 241, 598
Cac8I GCNNGC 1 cut(s) 64
CaiI CAGNNNCTG 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 677
CseI GACGC 2 cut(s) 62, 410
Csp6I GTAC 4 cut(s) 30, 187, 557, 659
CspCI CAANNNNNGTGG 2 cut(s) 248, 283
CviAII CATG 1 cut(s) 528
CviJI RGCY 8 cut(s) 62, 66, 154, 195, 206, 322, 488, 606
CviKI_1 RGCY 8 cut(s) 62, 66, 154, 195, 206, 322, 488, 606
CviQI GTAC 4 cut(s) 30, 187, 557, 659
DdeI CTNAG 1 cut(s) 747
DpnI GATC 2 cut(s) 96, 752
DpnII GATC 2 cut(s) 94, 750
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 541
Eco57I CTGAAG 2 cut(s) 176, 222
EcoNI CCTNNNNNAGG 1 cut(s) 564
EcoRII CCWGG 2 cut(s) 565, 588
EcoT14I CCWWGG 1 cut(s) 541
EcoT22I ATGCAT 2 cut(s) 6, 708
ErhI CCWWGG 1 cut(s) 541
FaeI CATG 1 cut(s) 531
FaiI YATR 7 cut(s) 42, 134, 146, 248, 343, 345, 529
FalI AAGNNNNNCTT 2 cut(s) 382, 414
FaqI GGGAC 1 cut(s) 583
FatI CATG 1 cut(s) 527
FokI GGATG 2 cut(s) 228, 605
FspBI CTAG 5 cut(s) 12, 63, 485, 518, 665
HapII CCGG 4 cut(s) 35, 46, 212, 678
HgaI GACGC 2 cut(s) 62, 410
Hin1II CATG 1 cut(s) 531
HinfI GANTC 2 cut(s) 280, 743
HpaII CCGG 4 cut(s) 35, 46, 212, 678
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 2 cut(s) 85, 118
Hpy188I TCNGA 2 cut(s) 202, 755
Hpy188III TCNNGA 5 cut(s) 35, 77, 212, 277, 284
Hpy8I GTNNAC 2 cut(s) 85, 118
HpyAV CCTTC 4 cut(s) 167, 219, 408, 607
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 6 cut(s) 4, 315, 448, 596, 706, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 1 cut(s) 747
HpySE526I ACGT 1 cut(s) 636
Hsp92II CATG 1 cut(s) 531
Kpn2I TCCGGA 2 cut(s) 34, 211
Kzo9I GATC 2 cut(s) 94, 750
LmnI GCTCC 2 cut(s) 319, 611
LweI GCATC 3 cut(s) 13, 583, 693
MaeI CTAG 5 cut(s) 12, 63, 485, 518, 665
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 1 cut(s) 270
MalI GATC 2 cut(s) 96, 752
MbiI CCGCTC 2 cut(s) 254, 512
MboI GATC 2 cut(s) 94, 750
MboII GAAGA 4 cut(s) 169, 182, 308, 644
MflI RGATCY 1 cut(s) 750
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 1 cut(s) 719
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 8 cut(s) 18, 52, 130, 286, 360, 435, 622, 744
Mph1103I ATGCAT 2 cut(s) 6, 708
MroI TCCGGA 2 cut(s) 34, 211
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 2 cut(s) 125, 526
MspI CCGG 4 cut(s) 35, 46, 212, 678
MspR9I CCNGG 2 cut(s) 567, 590
MvaI CCWGG 2 cut(s) 567, 590
MvnI CGCG 1 cut(s) 421
MwoI GCNNNNNNNGC 1 cut(s) 518
NdeII GATC 2 cut(s) 94, 750
NheI GCTAGC 1 cut(s) 62
NlaIII CATG 1 cut(s) 531
NlaIV GGNNCC 2 cut(s) 129, 607
NmuCI GTSAC 1 cut(s) 270
NsiI ATGCAT 2 cut(s) 6, 708
OliI CACNNNNGTG 1 cut(s) 125
PasI CCCWGGG 1 cut(s) 566
PfeI GAWTC 1 cut(s) 743
PflFI GACNNNGTC 1 cut(s) 671
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 565, 588
PspGI CCWGG 2 cut(s) 565, 588
PspN4I GGNNCC 2 cut(s) 129, 607
PstNI CAGNNNCTG 1 cut(s) 386
PsuI RGATCY 1 cut(s) 750
PsyI GACNNNGTC 1 cut(s) 671
RsaI GTAC 4 cut(s) 31, 188, 558, 660
RsaNI GTAC 4 cut(s) 30, 187, 557, 659
RseI CAYNNNNRTG 2 cut(s) 125, 526
SaqAI TTAA 1 cut(s) 18
Sau3AI GATC 2 cut(s) 94, 750
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 2 cut(s) 567, 590
SduI GDGCHC 1 cut(s) 232
SfaNI GCATC 3 cut(s) 13, 583, 693
SfcI CTRYAG 1 cut(s) 132
SgrAI CRCCGGYG 1 cut(s) 677
SmiMI CAYNNNNRTG 2 cut(s) 125, 526
Sse9I AATT 1 cut(s) 719
SsiI CCGC 2 cut(s) 252, 510
SspI AATATT 1 cut(s) 601
SspMI CTAG 5 cut(s) 12, 63, 485, 518, 665
StyD4I CCNGG 2 cut(s) 565, 588
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 639
TaqI TCGA 1 cut(s) 472
TasI AATT 1 cut(s) 719
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 1 cut(s) 743
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseFI GTSAC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 230
Tth111I GACNNNGTC 1 cut(s) 671
XagI CCTNNNNNAGG 1 cut(s) 564
XapI RAATTY 1 cut(s) 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 677
XspI CTAG 5 cut(s) 12, 63, 485, 518, 665
Zsp2I ATGCAT 2 cut(s) 6, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.