Rh3DG035600

Aldo/keto reductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
2382637 .. 2385247
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG035600.1

Sequence Viewer

Length: 543 bp
ATGATACCTGCGGTGGGAGGGAATAATGCACTTGATAATTTGATGTGCTGCTCTTGGAAGTTTGCAAGTGCGCCAGAAAAGAGAAGGCAAAATACCATCTTGAATGGTTTACCACCATTTGGGGAGGAAAGAGGAAGAGGAAGAAGAACAAGGATGGCTGAGGATACACTCCAAGTTCCAAGAGTGCAACTGGGAACTGAGGGATTCGAGCAATCACTTCCTCGTTGTCAAGGCGACAACCTTGAGAAAAACAAGATTCTTTATGGTAAAGTACAATACTTGGCTGAGAAACATGGATGCACCCCTGCACAACTCGCGCTTGCGTGGATTGTTCATCAAGGTGATCATGTGGTACCTATCCCTGGGACAACTAAGACTGAAAATATTGATGCTAATGTCGGTTCCTTGAGAGTGAAACTCACTGAAGAAGATATACAGGAGATATCTGATATGATACCCATCAATGCAGCGACAGGGAATAGAGTATCCGATAGTCTTATTCGCTGCTCTTGGAAGTTTGCAAATACACCACCAAAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

180

Amino Acids

19.87

Weight (kDa)

8.3

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 75 - 150 5e-13 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 16
Acc65I GGTACC 1 cut(s) 352
AccB1I GGYRCC 1 cut(s) 352
AccB7I CCANNNNNTGG 1 cut(s) 119
AccII CGCG 1 cut(s) 317
AciI CCGC 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 2 cut(s) 273, 354
AfiI CCNNNNNNNGG 3 cut(s) 14, 119, 362
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 1 cut(s) 540
AluI AGCT 1 cut(s) 540
ApeKI GCWGC 3 cut(s) 48, 467, 504
Asp718I GGTACC 1 cut(s) 352
AspLEI GCGC 2 cut(s) 73, 319
AsuHPI GGTGA 1 cut(s) 353
BanI GGYRCC 1 cut(s) 352
BarI GAAGNNNNNNTAC 4 cut(s) 76, 108, 417, 449
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 3 cut(s) 35, 479, 491
BccI CCATC 3 cut(s) 104, 148, 467
BciT130I CCWGG 1 cut(s) 363
BciVI GTATCC 2 cut(s) 157, 496
BclI TGATCA 1 cut(s) 343
BfaI CTAG 1 cut(s) 541
BfuAI ACCTGC 1 cut(s) 16
BfuI GTATCC 2 cut(s) 157, 496
BisI GCNGC 3 cut(s) 49, 468, 505
BlsI GCNGC 3 cut(s) 50, 469, 506
Bme1390I CCNGG 1 cut(s) 363
BmiI GGNNCC 2 cut(s) 354, 403
BmrFI CCNGG 1 cut(s) 363
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 2 cut(s) 287, 379
BmuI ACTGGG 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 402, 434
Bpu10I CCTNAGC 1 cut(s) 159
BpuEI CTTGAG 2 cut(s) 263, 427
BsaBI GATNNNNATC 1 cut(s) 458
BsaJI CCNNGG 2 cut(s) 361, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 119, 362
Bse1I ACTGG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 458
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 2 cut(s) 361, 362
BseGI GGATG 2 cut(s) 159, 302
BseJI GATNNNNATC 1 cut(s) 458
BseLI CCNNNNNNNGG 3 cut(s) 14, 119, 362
BseMII CTCAG 3 cut(s) 150, 189, 276
BseNI ACTGG 1 cut(s) 195
BseXI GCAGC 3 cut(s) 35, 479, 491
BsgI GTGCAG 1 cut(s) 291
Bsh1236I CGCG 1 cut(s) 317
BshNI GGYRCC 1 cut(s) 352
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 3 cut(s) 14, 119, 362
BsmFI GGGAC 1 cut(s) 379
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 1 cut(s) 11
BspCNI CTCAG 3 cut(s) 151, 190, 277
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 2 cut(s) 354, 403
BspMI ACCTGC 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 352
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 361, 362
BssMI GATC 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 363
Bst6I CTCTTC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 4 cut(s) 159, 198, 285, 372
BstF5I GGATG 2 cut(s) 159, 302
BstFNI CGCG 1 cut(s) 317
BstHHI GCGC 2 cut(s) 73, 319
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 3 cut(s) 35, 479, 491
BsuI GTATCC 2 cut(s) 157, 496
BtsCI GGATG 2 cut(s) 159, 302
BtsIMutI CAGTG 1 cut(s) 420
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 321
CfoI GCGC 2 cut(s) 73, 319
Csp6I GTAC 2 cut(s) 272, 353
CviAII CATG 2 cut(s) 293, 347
CviJI RGCY 3 cut(s) 158, 284, 540
CviKI_1 RGCY 3 cut(s) 158, 284, 540
CviQI GTAC 2 cut(s) 272, 353
DdeI CTNAG 4 cut(s) 159, 198, 285, 372
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco32I GATATC 1 cut(s) 444
Eco57I CTGAAG 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 361
EcoRV GATATC 1 cut(s) 444
FaeI CATG 2 cut(s) 296, 350
FaiI YATR 5 cut(s) 264, 294, 348, 434, 452
FaqI GGGAC 1 cut(s) 379
FatI CATG 2 cut(s) 292, 346
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 3 cut(s) 49, 468, 505
FokI GGATG 2 cut(s) 166, 309
Fsp4HI GCNGC 3 cut(s) 49, 468, 505
FspBI CTAG 1 cut(s) 541
GlaI GCGC 2 cut(s) 72, 318
GluI GCNGC 3 cut(s) 49, 468, 505
HhaI GCGC 2 cut(s) 73, 319
Hin1II CATG 2 cut(s) 296, 350
Hin6I GCGC 2 cut(s) 71, 317
HinP1I GCGC 2 cut(s) 71, 317
HinfI GANTC 2 cut(s) 204, 256
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 448, 490
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 78
HpyCH4V TGCA 7 cut(s) 29, 65, 187, 300, 308, 467, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 4 cut(s) 159, 198, 285, 372
Hsp92II CATG 2 cut(s) 296, 350
HspAI GCGC 2 cut(s) 71, 317
KpnI GGTACC 1 cut(s) 356
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 1 cut(s) 343
LpnPI CCDG 8 cut(s) 21, 87, 176, 318, 348, 375, 422, 459
Lsp1109I GCAGC 3 cut(s) 35, 479, 491
LweI GCATC 2 cut(s) 287, 379
MaeI CTAG 1 cut(s) 541
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 5 cut(s) 147, 153, 156, 437, 440
MluCI AATT 1 cut(s) 37
MnlI CCTC 7 cut(s) 11, 118, 125, 131, 154, 193, 231
MslI CAYNNNNRTG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 1 cut(s) 343
NlaIII CATG 2 cut(s) 296, 350
NlaIV GGNNCC 2 cut(s) 354, 403
PasI CCCWGGG 1 cut(s) 362
PfeI GAWTC 2 cut(s) 204, 256
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 3 cut(s) 50, 469, 506
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 354, 403
RsaI GTAC 2 cut(s) 273, 354
RsaNI GTAC 2 cut(s) 272, 353
RseI CAYNNNNRTG 1 cut(s) 339
SatI GCNGC 3 cut(s) 49, 468, 505
Sau3AI GATC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 363
SetI ASST 5 cut(s) 10, 243, 343, 358, 542
SfaNI GCATC 2 cut(s) 287, 379
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 2 cut(s) 242, 406
SmoI CTYRAG 2 cut(s) 242, 406
Sse9I AATT 1 cut(s) 37
SsiI CCGC 1 cut(s) 11
SspI AATATT 1 cut(s) 385
SspMI CTAG 1 cut(s) 541
StyD4I CCNGG 1 cut(s) 361
TaqI TCGA 1 cut(s) 207
TasI AATT 1 cut(s) 37
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 2 cut(s) 204, 256
TscAI CASTG 1 cut(s) 427
TseI GCWGC 3 cut(s) 48, 467, 504
TspDTI ATGAA 1 cut(s) 323
TspRI CASTG 1 cut(s) 427
Van91I CCANNNNNTGG 1 cut(s) 119
XspI CTAG 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.