Rorug03G0314800

Perakine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000149
Physical Location & Seq
Forward (+)
33898566 .. 33900286
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0314800.1

Sequence Viewer

Length: 420 bp
ATGGAGTCTGAGATGACAGTACATGATGGTGGGTGCCACTGCAAGAATGTAAGATGGCGAGTGCAAGCGCCTACTAAGGTTGTGGCTTGGAGTTGCAACTGTTCAAATTGCTCTATGAGGGGTAACACGCATTTCATTGTCCCTTCTGAAAGATTTGAACTCTTGGGTAATTCTGAACAGTTTCTCACAACTTATAGCTTTGGTTCTCACACGGCAAAGCATACTTTCTGTAAGGTCTGTGGGATAACTTCATTTTATTATCCACGCTCAAACCCTGATGGGGTTGCCATCACATATAGGTGTGTTGATCCTGGAACACTAACCTATGTTGAGGTCAAGTATTTTGATGGCCAAAATTGGGAAAACTCCTACAACCAGTCGAACATTGCTTCGCTGTCAAAGGTAGACTCTGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

139

Amino Acids

15.64

Weight (kDa)

6.93

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GFA PF04828 8 - 104 3.8e-12 Glutathione-dependent formaldehyde-activating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 33
AccI GTMKAC 1 cut(s) 405
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 1 cut(s) 349
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 2 cut(s) 280, 358
AgsI TTSAA 2 cut(s) 105, 158
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
AlwI GGATC 1 cut(s) 302
AoxI GGCC 1 cut(s) 349
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 351
BanI GGYRCC 1 cut(s) 33
BccI CCATC 5 cut(s) 20, 48, 272, 296, 341
BceAI ACGGC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 312
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 358
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 280, 358
BseMI GCAATG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 376
BshFI GGCC 1 cut(s) 351
BshNI GGYRCC 1 cut(s) 33
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 280, 358
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 351
Bsp143I GATC 1 cut(s) 307
BspANI GGCC 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 1 cut(s) 376
BssMI GATC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 3 cut(s) 19, 101, 180
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 9, 75
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BsuRI GGCC 1 cut(s) 351
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 20
CviAII CATG 1 cut(s) 23
CviJI RGCY 3 cut(s) 86, 198, 351
CviKI_1 RGCY 3 cut(s) 86, 198, 351
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 2 cut(s) 9, 75
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 1 cut(s) 26
FaiI YATR 7 cut(s) 24, 116, 195, 222, 295, 297, 327
FaqI GGGAC 1 cut(s) 125
FatI CATG 1 cut(s) 22
FblI GTMKAC 1 cut(s) 405
GlaI GCGC 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 1 cut(s) 351
HhaI GCGC 1 cut(s) 70
Hin1II CATG 1 cut(s) 26
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 2 cut(s) 5, 407
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 3 cut(s) 10, 148, 175
Hpy188III TCNNGA 1 cut(s) 411
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 3 cut(s) 19, 101, 180
HpyCH4V TGCA 3 cut(s) 42, 64, 96
HpyF3I CTNAG 2 cut(s) 9, 75
Hsp92II CATG 1 cut(s) 26
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 1 cut(s) 307
LpnPI CCDG 5 cut(s) 288, 297, 324, 389, 396
MaeIII GTNAC 1 cut(s) 122
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 3 cut(s) 106, 169, 355
MluNI TGGCCA 1 cut(s) 351
MlyI GAGTC 2 cut(s) 14, 401
MnlI CCTC 2 cut(s) 111, 325
Mox20I TGGCCA 1 cut(s) 351
MroXI GAANNNNTTC 1 cut(s) 180
MscI TGGCCA 1 cut(s) 351
MslI CAYNNNNRTG 2 cut(s) 27, 298
Msp20I TGGCCA 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
NdeII GATC 1 cut(s) 307
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 180
PfoI TCCNGGA 1 cut(s) 310
PleI GAGTC 2 cut(s) 13, 401
PpsI GAGTC 2 cut(s) 13, 401
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 35
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 2 cut(s) 27, 298
Sau3AI GATC 1 cut(s) 307
SchI GAGTC 2 cut(s) 14, 401
ScrFI CCNGG 1 cut(s) 312
SetI ASST 7 cut(s) 81, 200, 237, 302, 326, 336, 405
SmiMI CAYNNNNRTG 2 cut(s) 27, 298
Sse9I AATT 3 cut(s) 106, 169, 355
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 3 cut(s) 19, 101, 180
TaqI TCGA 1 cut(s) 380
TasI AATT 3 cut(s) 106, 169, 355
TatI WGTACW 1 cut(s) 19
TscAI CASTG 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 124, 240
TspRI CASTG 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.