Rh3BG035500

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000149
Physical Location & Seq
Forward (+)
2346341 .. 2348270
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG035500.1

Sequence Viewer

Length: 756 bp
ATGTCCTATACAACAAATGGTGTATATTGTCAAGTTTCCAAGTTGGGATTTGGGTGTATGGGACTTAATGGAATCTATAATGTGCCATTTTCTGAAGAGTTTGGCATATCAATGATCAAGTACGCATTTGACAGAGGAATAACATTCTTCGATACATCAGATGTTTATGGACCACATGCTAATGAAGTTTTGATCGGAAAGGCATTGAAGCAGCTGCCTCGAGATCAGGTTCAGGTGGCTACAAAGTTTGGAAATGTAAAGGCTGAGCCTGAGAAATATGTCCGCTCCTGCTGCGAGGCTAGCCTGAAGCGGCTTTATGTGGACTACATTGATCTTTACTATCAGCACCGGATAGATACATCAGTCCCCATAGAGGATACCATGGAGGAACTAAAGAAGCTGGTGAAAGAGGGGAAAATAAAGTACATTAGATTATCTGAAGCTAGCCCAGACACAATAAGAAGGGCACATGCAGTTCATCCTATCGCTGCAGTCCAAATGGAGTGGTCTCTTTGGACTCGCGACATTGAGGAACAAATCGTCCCACTTTGCAGGGAACTTGGAATCGGGATAGTGCCATACAGCCTCTTGGTCAAGGATTTTTTGGTGGCAGGGCAGTTGTGGAAGCTATACCATCAAGTAGTATTGTGGGATGGCTTCCTCGCTTTCAAGGAGACAACTTGGAGAAAAATAAAGACATCTATGCTAGAACACAAAAGTTGGCTGAAAAACATGGGTGCTCCCCTGCACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

251

Amino Acids

28.87

Weight (kDa)

8.16

Isoelectric Point (pI)

27.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 14 - 203 3.4e-54 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 285
AccII CGCG 1 cut(s) 522
AciI CCGC 2 cut(s) 283, 310
AcuI CTGAAG 3 cut(s) 114, 326, 459
AfaI GTAC 2 cut(s) 122, 425
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 2 cut(s) 208, 670
AloI GAACNNNNNNTCC 2 cut(s) 525, 557
AluBI AGCT 4 cut(s) 214, 400, 443, 628
AluI AGCT 4 cut(s) 214, 400, 443, 628
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 2 cut(s) 513, 668
Ama87I CYCGRG 1 cut(s) 219
ApeKI GCWGC 4 cut(s) 211, 214, 291, 488
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 415
AsuNHI GCTAGC 2 cut(s) 299, 443
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 469
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
Bbv12I GWGCWC 1 cut(s) 742
BbvI GCAGC 4 cut(s) 201, 223, 278, 475
BccI CCATC 2 cut(s) 642, 647
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciVI GTATCC 1 cut(s) 370
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 2 cut(s) 513, 668
BfaI CTAG 4 cut(s) 300, 444, 707, 754
BfmI CTRYAG 1 cut(s) 489
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 5 cut(s) 212, 215, 292, 311, 489
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 5 cut(s) 213, 216, 293, 312, 490
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 170
BmtI GCTAGC 2 cut(s) 303, 447
Bpu1102I GCTNAGC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 2 cut(s) 478, 658
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 255, 261
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 4 cut(s) 201, 223, 278, 475
BsgI GTGCAG 1 cut(s) 731
Bsh1236I CGCG 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 742
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 1 cut(s) 349
BslFI GGGAC 3 cut(s) 75, 350, 527
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 2 cut(s) 513, 668
BsmFI GGGAC 3 cut(s) 75, 350, 527
Bso31I GGTCTC 1 cut(s) 513
BsoBI CYCGRG 1 cut(s) 219
Bsp1286I GDGCHC 2 cut(s) 469, 742
Bsp143I GATC 4 cut(s) 114, 192, 223, 331
Bsp1720I GCTNAGC 1 cut(s) 264
Bsp19I CCATGG 1 cut(s) 381
Bsp68I TCGCGA 1 cut(s) 522
BspACI CCGC 2 cut(s) 283, 310
BspCNI CTCAG 2 cut(s) 256, 262
BspFNI CGCG 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 493
BspOI GCTAGC 2 cut(s) 303, 447
BspTNI GGTCTC 1 cut(s) 513
BsrBI CCGCTC 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 4 cut(s) 114, 192, 223, 331
BssT1I CCWWGG 1 cut(s) 381
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 301, 445
BstDEI CTNAG 2 cut(s) 264, 270
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 478, 658
BstFNI CGCG 1 cut(s) 522
BstKTI GATC 4 cut(s) 117, 195, 226, 334
BstMAI GTCTC 2 cut(s) 513, 668
BstMBI GATC 4 cut(s) 114, 192, 223, 331
BstMWI GCNNNNNNNGC 2 cut(s) 291, 300
BstNSI RCATGY 2 cut(s) 179, 473
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 1 cut(s) 469
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 4 cut(s) 201, 223, 278, 475
BsuI GTATCC 1 cut(s) 370
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 478, 658
BtuMI TCGCGA 1 cut(s) 522
Cac8I GCNNGC 2 cut(s) 301, 445
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 121, 424
CspCI CAANNNNNGTGG 2 cut(s) 485, 520
CviAII CATG 4 cut(s) 176, 382, 470, 733
CviQI GTAC 2 cut(s) 121, 424
DdeI CTNAG 2 cut(s) 264, 270
DpnI GATC 4 cut(s) 116, 194, 225, 333
DpnII GATC 4 cut(s) 114, 192, 223, 331
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 513
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 3 cut(s) 114, 326, 459
Eco88I CYCGRG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 4 cut(s) 179, 385, 473, 736
FaqI GGGAC 3 cut(s) 75, 350, 527
FatI CATG 4 cut(s) 175, 381, 469, 732
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 5 cut(s) 212, 215, 292, 311, 489
FokI GGATG 2 cut(s) 465, 665
Fsp4HI GCNGC 5 cut(s) 212, 215, 292, 311, 489
FspBI CTAG 4 cut(s) 300, 444, 707, 754
GluI GCNGC 5 cut(s) 212, 215, 292, 311, 489
HapII CCGG 1 cut(s) 349
Hin1II CATG 4 cut(s) 179, 385, 473, 736
HinfI GANTC 3 cut(s) 72, 517, 564
HpaII CCGG 1 cut(s) 349
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 4 cut(s) 94, 160, 197, 439
Hpy188III TCNNGA 3 cut(s) 221, 521, 568
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 456
HpyCH4V TGCA 4 cut(s) 473, 491, 552, 748
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 300
HpyF3I CTNAG 2 cut(s) 264, 270
Hsp92II CATG 4 cut(s) 179, 385, 473, 736
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 4 cut(s) 114, 192, 223, 331
LmnI GCTCC 2 cut(s) 290, 745
Lsp1109I GCAGC 4 cut(s) 201, 223, 278, 475
MaeI CTAG 4 cut(s) 300, 444, 707, 754
MalI GATC 4 cut(s) 116, 194, 225, 333
MbiI CCGCTC 1 cut(s) 285
MboI GATC 4 cut(s) 114, 192, 223, 331
MboII GAAGA 2 cut(s) 107, 139
MhlI GDGCHC 2 cut(s) 469, 742
MlyI GAGTC 1 cut(s) 511
MnlI CCTC 9 cut(s) 128, 228, 289, 367, 379, 403, 523, 596, 671
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 2 cut(s) 110, 180
MspA1I CMGCKG 1 cut(s) 214
MspI CCGG 1 cut(s) 349
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 2 cut(s) 291, 300
NcoI CCATGG 1 cut(s) 381
NdeII GATC 4 cut(s) 114, 192, 223, 331
NheI GCTAGC 2 cut(s) 299, 443
NlaIII CATG 4 cut(s) 179, 385, 473, 736
NruI TCGCGA 1 cut(s) 522
NspI RCATGY 2 cut(s) 179, 473
PaeR7I CTCGAG 1 cut(s) 219
PfeI GAWTC 2 cut(s) 72, 564
PkrI GCNGC 5 cut(s) 213, 216, 293, 312, 490
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
PspPI GGNCC 1 cut(s) 170
PstI CTGCAG 1 cut(s) 493
PvuII CAGCTG 1 cut(s) 214
RruI TCGCGA 1 cut(s) 522
RsaI GTAC 2 cut(s) 122, 425
RsaNI GTAC 2 cut(s) 121, 424
RseI CAYNNNNRTG 2 cut(s) 110, 180
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 5 cut(s) 212, 215, 292, 311, 489
Sau3AI GATC 4 cut(s) 114, 192, 223, 331
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 511
SduI GDGCHC 2 cut(s) 469, 742
SetI ASST 6 cut(s) 216, 231, 237, 402, 445, 630
SfcI CTRYAG 1 cut(s) 489
Sfr274I CTCGAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 170
SlaI CTCGAG 1 cut(s) 219
SmiMI CAYNNNNRTG 2 cut(s) 110, 180
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
SsiI CCGC 2 cut(s) 283, 310
SspMI CTAG 4 cut(s) 300, 444, 707, 754
StyI CCWWGG 1 cut(s) 381
TaqI TCGA 2 cut(s) 150, 220
TatI WGTACW 1 cut(s) 423
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 2 cut(s) 72, 564
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 4 cut(s) 211, 214, 291, 488
TspDTI ATGAA 2 cut(s) 198, 467
VpaK11BI GGWCC 1 cut(s) 170
XceI RCATGY 2 cut(s) 179, 473
XhoI CTCGAG 1 cut(s) 219
XspI CTAG 4 cut(s) 300, 444, 707, 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.