Rh3CG034400

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000149
Physical Location & Seq
Forward (+)
2359007 .. 2372615
13609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG034400.1

Sequence Viewer

Length: 528 bp
ATGTTATTCTTGTTAATATTATTTTTGAATGATTTCTTTGATGGGACGACAAAGACTGAAAATATTGATGCTAATGTCGGTTCCTGGAGAGTGAAACTCACTAAAGAACATATACAGGAGATATCTGATATGATACTCATCGATGCAGCGACAGGGAATAGAGTATCCGATAGTCCTTTCTCGGATAGGGTTTCTGGGTCGGATTCAACTTCCACGGATCATAGATTCATAATCCTAGGGCTACGTCACTCTATCTCTGGCGCACTACTCCACTTTGCTAATCTCAGTCCGCTTTATAACTGCGCTTCTAATGGCTACTTCAGTGTGCATGAACATCTCCTTGTGTTCAATCCCAGAGATACTGCTGCCGAGTTTGGATGGAATTCATGGCATGATCTAGTCTCTAGAGGTGCTTATCAAGTTTTCCAAGCTTGTTTGATTTGGAATTGGGAATTGGTGGAATCAAATCAATTAGGCAGTACAGAAATGTTCGAATTGACAACAAATAAATCTGTTGTCAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

175

Amino Acids

19.72

Weight (kDa)

5.06

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 297
AciI CCGC 1 cut(s) 290
AclWI GGATC 1 cut(s) 225
AcsI RAATTY 1 cut(s) 382
AcuI CTGAAG 1 cut(s) 304
AfaI GTAC 1 cut(s) 481
AgsI TTSAA 3 cut(s) 28, 207, 349
AjnI CCWGG 1 cut(s) 83
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AluBI AGCT 1 cut(s) 431
AluI AGCT 1 cut(s) 431
Alw26I GTCTC 1 cut(s) 406
AlwI GGATC 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 146, 365
ApoI RAATTY 1 cut(s) 382
Asp700I GAANNNNTTC 1 cut(s) 32
AspA2I CCTAGG 1 cut(s) 235
AspLEI GCGC 2 cut(s) 263, 305
AsuII TTCGAA 1 cut(s) 492
AvrII CCTAGG 1 cut(s) 235
BbvI GCAGC 2 cut(s) 158, 352
BccI CCATC 2 cut(s) 35, 372
BciT130I CCWGG 1 cut(s) 85
BciVI GTATCC 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 406
BfaI CTAG 3 cut(s) 236, 398, 405
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 2 cut(s) 147, 366
BlnI CCTAGG 1 cut(s) 235
BlsI GCNGC 2 cut(s) 148, 367
Bme1390I CCNGG 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 2 cut(s) 58, 133
BplI GAGNNNNNCTC 2 cut(s) 81, 113
BpmI CTGGAG 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 492
Bsa29I ATCGAT 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 213, 235
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 1 cut(s) 85
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 213, 235
BseGI GGATG 1 cut(s) 383
BseJI GATNNNNATC 1 cut(s) 137
BseMII CTCAG 1 cut(s) 298
BseXI GCAGC 2 cut(s) 158, 352
BshVI ATCGAT 1 cut(s) 141
BslFI GGGAC 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 406
BsmFI GGGAC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 492
Bsp143I GATC 2 cut(s) 217, 394
BspACI CCGC 1 cut(s) 290
BspCNI CTCAG 1 cut(s) 297
BspDI ATCGAT 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 213, 235
BssMI GATC 2 cut(s) 217, 394
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 492
BstDEI CTNAG 1 cut(s) 284
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 383
BstHHI GCGC 2 cut(s) 263, 305
BstKTI GATC 2 cut(s) 220, 397
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 2 cut(s) 217, 394
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 158, 352
Bsu15I ATCGAT 1 cut(s) 141
BsuI GTATCC 1 cut(s) 175
BsuTUI ATCGAT 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 383
BtsIMutI CAGTG 1 cut(s) 328
CfoI GCGC 2 cut(s) 263, 305
ClaI ATCGAT 1 cut(s) 141
Csp6I GTAC 1 cut(s) 480
CviAII CATG 3 cut(s) 329, 387, 392
CviJI RGCY 3 cut(s) 241, 315, 431
CviKI_1 RGCY 3 cut(s) 241, 315, 431
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 1 cut(s) 284
DpnI GATC 2 cut(s) 219, 396
DpnII GATC 2 cut(s) 217, 394
Eco130I CCWWGG 1 cut(s) 235
Eco32I GATATC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 83
EcoRV GATATC 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 3 cut(s) 332, 390, 395
FaiI YATR 9 cut(s) 111, 113, 131, 222, 230, 297, 330, 388, 393
FaqI GGGAC 1 cut(s) 58
FatI CATG 3 cut(s) 328, 386, 391
Fnu4HI GCNGC 2 cut(s) 147, 366
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 2 cut(s) 147, 366
FspBI CTAG 3 cut(s) 236, 398, 405
GlaI GCGC 2 cut(s) 262, 304
GluI GCNGC 2 cut(s) 147, 366
GsuI CTGGAG 1 cut(s) 106
HhaI GCGC 2 cut(s) 263, 305
Hin1II CATG 3 cut(s) 332, 390, 395
Hin6I GCGC 2 cut(s) 261, 303
HinP1I GCGC 2 cut(s) 261, 303
HindIII AAGCTT 1 cut(s) 429
HinfI GANTC 3 cut(s) 203, 225, 461
Hpy188I TCNGA 4 cut(s) 127, 169, 184, 202
Hpy188III TCNNGA 1 cut(s) 405
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 146, 328
HpyF3I CTNAG 1 cut(s) 284
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 3 cut(s) 332, 390, 395
HspAI GCGC 2 cut(s) 261, 303
Kzo9I GATC 2 cut(s) 217, 394
LpnPI CCDG 7 cut(s) 70, 97, 101, 138, 180, 243, 367
Lsp1109I GCAGC 2 cut(s) 158, 352
LweI GCATC 2 cut(s) 58, 133
MaeI CTAG 3 cut(s) 236, 398, 405
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 245
MalI GATC 2 cut(s) 219, 396
MboI GATC 2 cut(s) 217, 394
MluCI AATT 5 cut(s) 382, 445, 452, 470, 494
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 1 cut(s) 401
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
NdeII GATC 2 cut(s) 217, 394
NlaIII CATG 3 cut(s) 332, 390, 395
NlaIV GGNNCC 1 cut(s) 82
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 245
NspV TTCGAA 1 cut(s) 492
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 3 cut(s) 203, 225, 461
PfoI TCCNGGA 1 cut(s) 83
PkrI GCNGC 2 cut(s) 148, 367
PsiI TTATAA 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 82
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 2 cut(s) 147, 366
Sau3AI GATC 2 cut(s) 217, 394
ScrFI CCNGG 1 cut(s) 85
SetI ASST 3 cut(s) 247, 412, 433
SfaNI GCATC 2 cut(s) 58, 133
SfuI TTCGAA 1 cut(s) 492
Sse9I AATT 5 cut(s) 382, 445, 452, 470, 494
SsiI CCGC 1 cut(s) 290
SspI AATATT 2 cut(s) 18, 64
SspMI CTAG 3 cut(s) 236, 398, 405
StyD4I CCNGG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 235
TaiI ACGT 1 cut(s) 247
TaqI TCGA 2 cut(s) 141, 492
TasI AATT 5 cut(s) 382, 445, 452, 470, 494
TatI WGTACW 1 cut(s) 479
TfiI GAWTC 3 cut(s) 203, 225, 461
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 2 cut(s) 146, 365
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 3 cut(s) 217, 345, 375
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 1 cut(s) 328
XapI RAATTY 1 cut(s) 382
XbaI TCTAGA 1 cut(s) 404
XmaJI CCTAGG 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 3 cut(s) 236, 398, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.