Rw3G002200

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000149
Physical Location & Seq
Reverse (-)
1942935 .. 1944814
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002200.1

Sequence Viewer

Length: 1056 bp
ATGGCTGAGGTTGAGGGAGTTAAAGTTCCGAGAGTGCAACTGGGAAGTCAGGGATTTGAGGTTTCCAAGCTGGGATTTGGGTGTAGACGGCTTACTGGGACATACAGCGAAGCTCTAATCAGTGAAGAGTTTGCATTATCATTGATCAAGCACGCATTCGATAAAGGAATAACATTCTTTGATACAGCAGATCTCTATGGACCACATGCCAATGAAGTTTTGGTTGGAAAGGCATTGAAGCAGTTGCCTAGAGACCAAGTTCAGTTGGCTACAAAGTTTGGCATTGTAAGAATTGAGCCTGATGAAACTAGGATAGTTAATGGGACTCCTGAGTATGTCCGCTCCTGTTGCGAGGCTAGCCTAAAGCGCCTTGATGTTGACTACATTGATCTTTACTATCAACATCGCGTAGACACATCAGTCCCAATAGAGGACACTATGGGGGAACTAAAGAAGTTGGTGGAAGAAGGGAAGATAAAATACATTGGATTATCTGAAGCTAGTCCAGAAACAATTAGGAGGGCACATGCAGTTCATCCCATTACGGCTATACAAATGGAGTGGTCTCTTTGGACTCGCGAAATTGAGCAAGTATTCGTCCCACTTTGCAGGGAACTTGAAATTGGGATAGTGCCATACCACCCCCTTGGTCGTGGATTTTTAGCTATAGATGGTCTACCTGAAGATCGCTTTCTGCGTTCAATTCCTCGTTGTCAAGGAGACAACCTGAAGAAAAATAAGATCCTTCAGGGTAAAATATTGAACTTGGCTGAAAAATATGGATGCACCCCTGCACAACTCGCACTTGCGTGGATCGTTAATCAACCCGATGTCTGCTGTGTGCCTGGCACAACCAAGACTAAACATATTGATGCTAATGTTGGTTCCTTCAAAGTGAAGCTATCTAAAGAAGATATAAAAGAGATATCTGAGACAATACCTATCAACGCAGCGGCAGGTTACAGATTACCGGACTATTGCCTGCCCTGCCTTTGGCAGTGTGCAGATACACCACCAAAAGCTAGCAAGCAATGCAACCAGAAGAAGCCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

351

Amino Acids

39.24

Weight (kDa)

7.02

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 311 1.6e-72 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 947
AccBSI CCGCTC 1 cut(s) 342
AccI GTMKAC 3 cut(s) 85, 411, 676
AccII CGCG 2 cut(s) 408, 579
AciI CCGC 2 cut(s) 340, 953
AclWI GGATC 2 cut(s) 736, 821
AcuI CTGAAG 4 cut(s) 516, 702, 731, 749
AfiI CCNNNNNNNGG 2 cut(s) 430, 993
AgsI TTSAA 5 cut(s) 238, 620, 702, 763, 892
AjnI CCWGG 1 cut(s) 844
AjuI GAANNNNNNNTTGG 4 cut(s) 207, 239, 606, 638
AleI CACNNNNGTG 1 cut(s) 808
AloI GAACNNNNNNTCC 2 cut(s) 9, 41
AluBI AGCT 6 cut(s) 70, 113, 500, 665, 901, 1022
AluI AGCT 6 cut(s) 70, 113, 500, 665, 901, 1022
Alw26I GTCTC 4 cut(s) 246, 570, 714, 926
AlwI GGATC 2 cut(s) 736, 821
ApeKI GCWGC 1 cut(s) 950
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 200
AsuNHI GCTAGC 2 cut(s) 356, 1022
AvaII GGWCC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 526
BarI GAAGNNNNNNTAC 2 cut(s) 464, 496
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 1 cut(s) 962
BccI CCATC 1 cut(s) 665
BceAI ACGGC 2 cut(s) 104, 561
BciT130I CCWGG 1 cut(s) 846
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 4 cut(s) 246, 570, 714, 926
BfaI CTAG 5 cut(s) 249, 309, 357, 501, 1023
BfmI CTRYAG 1 cut(s) 666
BfoI RGCGCY 1 cut(s) 370
BfuAI ACCTGC 1 cut(s) 947
BglII AGATCT 1 cut(s) 190
BisI GCNGC 2 cut(s) 951, 954
BlsI GCNGC 2 cut(s) 952, 955
Bme1390I CCNGG 1 cut(s) 846
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 886
BmrFI CCNGG 1 cut(s) 846
BmrI ACTGGG 2 cut(s) 50, 105
BmsI GCATC 2 cut(s) 773, 862
BmtI GCTAGC 2 cut(s) 360, 1026
BmuI ACTGGG 2 cut(s) 50, 105
Bpu10I CCTNAGC 1 cut(s) 6
BsaI GGTCTC 2 cut(s) 246, 570
BsaJI CCNNGG 1 cut(s) 646
BsaWI WCCGGW 1 cut(s) 970
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 2 cut(s) 430, 993
Bse1I ACTGG 2 cut(s) 45, 100
Bse3DI GCAATG 1 cut(s) 1037
BseBI CCWGG 1 cut(s) 846
BseDI CCNNGG 1 cut(s) 646
BseGI GGATG 2 cut(s) 535, 788
BseLI CCNNNNNNNGG 2 cut(s) 430, 993
BseMI GCAATG 1 cut(s) 1037
BseMII CTCAG 2 cut(s) 321, 921
BseNI ACTGG 2 cut(s) 45, 100
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 1 cut(s) 962
BseYI CCCAGC 1 cut(s) 70
BsgI GTGCAG 2 cut(s) 777, 1023
Bsh1236I CGCG 2 cut(s) 408, 579
BsiSI CCGG 1 cut(s) 971
BslFI GGGAC 4 cut(s) 112, 337, 407, 584
BslI CCNNNNNNNGG 2 cut(s) 430, 993
BsmAI GTCTC 4 cut(s) 246, 570, 714, 926
BsmFI GGGAC 4 cut(s) 112, 337, 407, 584
BsmI GAATGC 1 cut(s) 155
Bso31I GGTCTC 2 cut(s) 246, 570
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 6 cut(s) 144, 190, 388, 685, 741, 813
Bsp68I TCGCGA 1 cut(s) 579
BspACI CCGC 2 cut(s) 340, 953
BspCNI CTCAG 2 cut(s) 322, 922
BspFNI CGCG 2 cut(s) 408, 579
BspLI GGNNCC 1 cut(s) 886
BspMI ACCTGC 1 cut(s) 947
BspOI GCTAGC 2 cut(s) 360, 1026
BspPI GGATC 2 cut(s) 736, 821
BspTNI GGTCTC 2 cut(s) 246, 570
BsrBI CCGCTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 1037
BsrI ACTGG 2 cut(s) 45, 100
BssECI CCNNGG 1 cut(s) 646
BssMI GATC 6 cut(s) 144, 190, 388, 685, 741, 813
BssT1I CCWWGG 1 cut(s) 646
Bst2UI CCWGG 1 cut(s) 846
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 1032
BstC8I GCNNGC 5 cut(s) 153, 358, 983, 1024, 1028
BstDEI CTNAG 3 cut(s) 6, 330, 930
BstF5I GGATG 2 cut(s) 535, 788
BstFNI CGCG 2 cut(s) 408, 579
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 6 cut(s) 147, 193, 391, 688, 744, 816
BstMAI GTCTC 4 cut(s) 246, 570, 714, 926
BstMBI GATC 6 cut(s) 144, 190, 388, 685, 741, 813
BstMWI GCNNNNNNNGC 6 cut(s) 348, 357, 366, 800, 987, 1032
BstNI CCWGG 1 cut(s) 846
BstNSI RCATGY 2 cut(s) 209, 530
BstSCI CCNGG 1 cut(s) 844
BstSFI CTRYAG 1 cut(s) 666
BstSLI GKGCMC 1 cut(s) 526
BstUI CGCG 2 cut(s) 408, 579
BstV1I GCAGC 1 cut(s) 962
BstX2I RGATCY 2 cut(s) 190, 741
BstXI CCANNNNNNTGG 1 cut(s) 647
BstYI RGATCY 2 cut(s) 190, 741
BtgZI GCGATG 1 cut(s) 389
BtsCI GGATG 2 cut(s) 535, 788
BtsI GCAGTG 1 cut(s) 1004
BtsIMutI CAGTG 2 cut(s) 127, 1004
BtuMI TCGCGA 1 cut(s) 579
BveI ACCTGC 1 cut(s) 947
Cac8I GCNNGC 5 cut(s) 153, 358, 983, 1024, 1028
CfoI GCGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 200
CspCI CAANNNNNGTGG 2 cut(s) 542, 577
CviAII CATG 2 cut(s) 206, 527
DdeI CTNAG 3 cut(s) 6, 330, 930
DpnI GATC 6 cut(s) 146, 192, 390, 687, 743, 815
DpnII GATC 6 cut(s) 144, 190, 388, 685, 741, 813
DrdI GACNNNNNNGTC 1 cut(s) 419
DseDI GACNNNNNNGTC 1 cut(s) 419
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 646
Eco31I GGTCTC 2 cut(s) 246, 570
Eco32I GATATC 1 cut(s) 927
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 4 cut(s) 516, 702, 731, 749
EcoRII CCWGG 1 cut(s) 844
EcoRV GATATC 1 cut(s) 927
EcoT14I CCWWGG 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 646
FaeI CATG 2 cut(s) 209, 530
FaqI GGGAC 4 cut(s) 112, 337, 407, 584
FatI CATG 2 cut(s) 205, 526
FbaI TGATCA 1 cut(s) 144
FblI GTMKAC 3 cut(s) 85, 411, 676
Fnu4HI GCNGC 2 cut(s) 951, 954
FokI GGATG 2 cut(s) 522, 795
Fsp4HI GCNGC 2 cut(s) 951, 954
FspBI CTAG 5 cut(s) 249, 309, 357, 501, 1023
GlaI GCGC 1 cut(s) 368
GluI GCNGC 2 cut(s) 951, 954
GsaI CCCAGC 1 cut(s) 74
HaeII RGCGCY 1 cut(s) 370
HapII CCGG 1 cut(s) 971
HhaI GCGC 1 cut(s) 369
Hin1II CATG 2 cut(s) 209, 530
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 2 cut(s) 325, 574
HpaII CCGG 1 cut(s) 971
Hpy166II GTNNAC 4 cut(s) 86, 379, 412, 677
Hpy188I TCNGA 3 cut(s) 30, 496, 931
Hpy188III TCNNGA 3 cut(s) 329, 506, 578
Hpy8I GTNNAC 4 cut(s) 86, 379, 412, 677
HpyAV CCTTC 3 cut(s) 461, 755, 898
HpyCH4V TGCA 8 cut(s) 37, 134, 530, 609, 786, 794, 1004, 1035
HpyF10VI GCNNNNNNNGC 6 cut(s) 348, 357, 366, 800, 987, 1032
HpyF3I CTNAG 3 cut(s) 6, 330, 930
Hsp92II CATG 2 cut(s) 209, 530
HspAI GCGC 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 6 cut(s) 144, 190, 388, 685, 741, 813
LmnI GCTCC 1 cut(s) 347
Lsp1109I GCAGC 1 cut(s) 962
LweI GCATC 2 cut(s) 773, 862
MaeI CTAG 5 cut(s) 249, 309, 357, 501, 1023
MaeIII GTNAC 1 cut(s) 959
MalI GATC 6 cut(s) 146, 192, 390, 687, 743, 815
MbiI CCGCTC 1 cut(s) 342
MboI GATC 6 cut(s) 144, 190, 388, 685, 741, 813
MboII GAAGA 7 cut(s) 137, 476, 484, 695, 742, 923, 1054
MflI RGATCY 2 cut(s) 190, 741
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 5 cut(s) 291, 513, 582, 621, 702
MlyI GAGTC 2 cut(s) 319, 568
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 6 cut(s) 7, 52, 346, 424, 513, 717
MseI TTAA 3 cut(s) 21, 318, 819
MslI CAYNNNNRTG 3 cut(s) 210, 808, 870
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 1 cut(s) 971
MspR9I CCNGG 1 cut(s) 846
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 1 cut(s) 846
MvnI CGCG 2 cut(s) 408, 579
MwoI GCNNNNNNNGC 6 cut(s) 348, 357, 366, 800, 987, 1032
NdeII GATC 6 cut(s) 144, 190, 388, 685, 741, 813
NheI GCTAGC 2 cut(s) 356, 1022
NlaIII CATG 2 cut(s) 209, 530
NlaIV GGNNCC 1 cut(s) 886
NruI TCGCGA 1 cut(s) 579
NspI RCATGY 2 cut(s) 209, 530
OliI CACNNNNGTG 1 cut(s) 808
PcsI WCGNNNNNNNCGW 1 cut(s) 694
PctI GAATGC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 952, 955
PleI GAGTC 2 cut(s) 319, 568
PpsI GAGTC 2 cut(s) 319, 568
Psp6I CCWGG 1 cut(s) 844
PspFI CCCAGC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 844
PspN4I GGNNCC 1 cut(s) 886
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 2 cut(s) 190, 741
RruI TCGCGA 1 cut(s) 579
RseI CAYNNNNRTG 3 cut(s) 210, 808, 870
SaqAI TTAA 3 cut(s) 21, 318, 819
SatI GCNGC 2 cut(s) 951, 954
Sau3AI GATC 6 cut(s) 144, 190, 388, 685, 741, 813
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 2 cut(s) 319, 568
ScrFI CCNGG 1 cut(s) 846
SduI GDGCHC 1 cut(s) 526
SfaNI GCATC 2 cut(s) 773, 862
SfcI CTRYAG 1 cut(s) 666
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 3 cut(s) 210, 808, 870
Sse9I AATT 5 cut(s) 291, 513, 582, 621, 702
SsiI CCGC 2 cut(s) 340, 953
SspI AATATT 1 cut(s) 759
SspMI CTAG 5 cut(s) 249, 309, 357, 501, 1023
StyD4I CCNGG 1 cut(s) 844
StyI CCWWGG 1 cut(s) 646
TaqI TCGA 1 cut(s) 159
TasI AATT 5 cut(s) 291, 513, 582, 621, 702
TauI GCSGC 1 cut(s) 956
Tru1I TTAA 3 cut(s) 21, 318, 819
Tru9I TTAA 3 cut(s) 21, 318, 819
TscAI CASTG 2 cut(s) 127, 1004
TseI GCWGC 1 cut(s) 950
TspDTI ATGAA 3 cut(s) 228, 318, 524
TspRI CASTG 2 cut(s) 127, 1004
VpaK11BI GGWCC 1 cut(s) 200
XceI RCATGY 2 cut(s) 209, 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmiI GTMKAC 3 cut(s) 85, 411, 676
XspI CTAG 5 cut(s) 249, 309, 357, 501, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.