Rh3AG028500

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000149
Physical Location & Seq
Reverse (-)
1927463 .. 1929484
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG028500.1

Sequence Viewer

Length: 819 bp
ATGGCTGAGGTTGAGGGAGTTAAAGTTCCGAGAGTGCATCTGGGAAGTCAGGGATTTGAGGTTTCCGAGCTGGGATTTGGGTGTAGACGGCTTACTGGGACATACAGCGAAGCTCTAATCAGTGAAGAGTTTGCATTATCATTGATCAAGCACGCATTCGATAAAGGAATAACATTCTTTGATACAGCAGATCTCTATGGACCACATGCCAATGAAGTTTTGGTTGGAAAGGCATTGAAGCAGTTGCCTAGAGACCAAGTTCAGTTGGCTACAAAGTTTGGCATTGTAAGAATTGAGCCTGATGAAACTAGGATAGTTAATGGGACTCCTGAGTATGTCCGCTCCTGTTGCGAGGCTAGCCTAAAGCGCCTTGATGTTGACTACATTGATCTTTACTATCAACATCGCGTAGACACATCAGTCCCAATAGAGGACACTCGTTCAATTCCTCGTTGTCAAGGAGACAACCTCAAGAAAAATAAGATCCTTCAGGGTAAAATATTGAAATTGGCTGAAAAATATGGATGCAACCCTGCACAACTCGCACTTGCGTGGATCGCTAATCAACCCGATGTCTGCTGTGTGACTGGTGTTGTACCTATATTTGGCACAACCAAGACTAAACATATTGATGCTAATGTTGGTTCCTTCAAAGTGAAGCTATCTAAAGAAGATATAAAAGAGATATCTGAGACAATACCTATCAACGCAGCGGCAGGTTACAGATTACCGGACTATTGCCTGCCCTGCCTTTGGCAGTGTGCAGATACACCACCAAAAGCTAGCAAGCAATGCAACCAGAAGAAGCCAATAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

272

Amino Acids

30.16

Weight (kDa)

7.94

Isoelectric Point (pI)

26.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 146 8.1e-30 Aldo/keto reductase family
Aldo_ket_red PF00248 164 - 231 1.1e-11 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 707
AccBSI CCGCTC 1 cut(s) 342
AccI GTMKAC 2 cut(s) 85, 411
AccII CGCG 1 cut(s) 408
AciI CCGC 2 cut(s) 340, 713
AclWI GGATC 2 cut(s) 478, 563
AcuI CTGAAG 1 cut(s) 473
AfaI GTAC 1 cut(s) 597
AfiI CCNNNNNNNGG 3 cut(s) 430, 605, 753
AgsI TTSAA 4 cut(s) 238, 444, 505, 652
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AleI CACNNNNGTG 1 cut(s) 550
AloI GAACNNNNNNTCC 2 cut(s) 9, 41
AluBI AGCT 4 cut(s) 70, 113, 661, 782
AluI AGCT 4 cut(s) 70, 113, 661, 782
Alw26I GTCTC 3 cut(s) 246, 456, 686
AlwI GGATC 2 cut(s) 478, 563
ApeKI GCWGC 1 cut(s) 710
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 200
AsuNHI GCTAGC 2 cut(s) 356, 782
AvaII GGWCC 1 cut(s) 200
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 1 cut(s) 722
BceAI ACGGC 1 cut(s) 104
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 3 cut(s) 246, 456, 686
BfaI CTAG 4 cut(s) 249, 309, 357, 783
BfoI RGCGCY 1 cut(s) 370
BfuAI ACCTGC 1 cut(s) 707
BglII AGATCT 1 cut(s) 190
BisI GCNGC 2 cut(s) 711, 714
BlsI GCNGC 2 cut(s) 712, 715
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 646
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 3 cut(s) 46, 515, 622
BmtI GCTAGC 2 cut(s) 360, 786
BmuI ACTGGG 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 453, 485
Bpu10I CCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 455
BsaI GGTCTC 1 cut(s) 246
BsaWI WCCGGW 1 cut(s) 730
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 3 cut(s) 430, 605, 753
Bse1I ACTGG 2 cut(s) 100, 592
Bse3DI GCAATG 1 cut(s) 797
BseGI GGATG 1 cut(s) 530
BseLI CCNNNNNNNGG 3 cut(s) 430, 605, 753
BseMI GCAATG 1 cut(s) 797
BseMII CTCAG 2 cut(s) 321, 681
BseNI ACTGG 2 cut(s) 100, 592
BseXI GCAGC 1 cut(s) 722
BseYI CCCAGC 1 cut(s) 70
BsgI GTGCAG 2 cut(s) 519, 783
Bsh1236I CGCG 1 cut(s) 408
BsiSI CCGG 1 cut(s) 731
BslFI GGGAC 3 cut(s) 112, 337, 407
BslI CCNNNNNNNGG 3 cut(s) 430, 605, 753
BsmAI GTCTC 3 cut(s) 246, 456, 686
BsmFI GGGAC 3 cut(s) 112, 337, 407
BsmI GAATGC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 246
Bsp143I GATC 5 cut(s) 144, 190, 388, 483, 555
BspACI CCGC 2 cut(s) 340, 713
BspCNI CTCAG 2 cut(s) 322, 682
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 707
BspOI GCTAGC 2 cut(s) 360, 786
BspPI GGATC 2 cut(s) 478, 563
BspTNI GGTCTC 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 797
BsrI ACTGG 2 cut(s) 100, 592
BssMI GATC 5 cut(s) 144, 190, 388, 483, 555
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 792
BstC8I GCNNGC 5 cut(s) 153, 358, 743, 784, 788
BstDEI CTNAG 3 cut(s) 6, 330, 690
BstF5I GGATG 1 cut(s) 530
BstFNI CGCG 1 cut(s) 408
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 5 cut(s) 147, 193, 391, 486, 558
BstMAI GTCTC 3 cut(s) 246, 456, 686
BstMBI GATC 5 cut(s) 144, 190, 388, 483, 555
BstMWI GCNNNNNNNGC 7 cut(s) 348, 357, 366, 542, 557, 747, 792
BstNSI RCATGY 1 cut(s) 209
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 1 cut(s) 722
BstX2I RGATCY 2 cut(s) 190, 483
BstYI RGATCY 2 cut(s) 190, 483
BtgZI GCGATG 1 cut(s) 389
BtsCI GGATG 1 cut(s) 530
BtsI GCAGTG 1 cut(s) 764
BtsIMutI CAGTG 2 cut(s) 127, 764
BveI ACCTGC 1 cut(s) 707
Cac8I GCNNGC 5 cut(s) 153, 358, 743, 784, 788
CfoI GCGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 596
CviAII CATG 1 cut(s) 206
CviQI GTAC 1 cut(s) 596
DdeI CTNAG 3 cut(s) 6, 330, 690
DpnI GATC 5 cut(s) 146, 192, 390, 485, 557
DpnII GATC 5 cut(s) 144, 190, 388, 483, 555
DrdI GACNNNNNNGTC 1 cut(s) 419
DseDI GACNNNNNNGTC 1 cut(s) 419
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 246
Eco32I GATATC 1 cut(s) 687
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 473
EcoRV GATATC 1 cut(s) 687
FaeI CATG 1 cut(s) 209
FaiI YATR 9 cut(s) 103, 198, 207, 336, 522, 602, 627, 677, 817
FaqI GGGAC 3 cut(s) 112, 337, 407
FatI CATG 1 cut(s) 205
FbaI TGATCA 1 cut(s) 144
FblI GTMKAC 2 cut(s) 85, 411
Fnu4HI GCNGC 2 cut(s) 711, 714
FokI GGATG 1 cut(s) 537
Fsp4HI GCNGC 2 cut(s) 711, 714
FspBI CTAG 4 cut(s) 249, 309, 357, 783
GlaI GCGC 1 cut(s) 368
GluI GCNGC 2 cut(s) 711, 714
GsaI CCCAGC 1 cut(s) 74
HaeII RGCGCY 1 cut(s) 370
HapII CCGG 1 cut(s) 731
HhaI GCGC 1 cut(s) 369
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 1 cut(s) 325
HpaII CCGG 1 cut(s) 731
Hpy166II GTNNAC 3 cut(s) 86, 379, 412
Hpy188I TCNGA 3 cut(s) 30, 67, 691
Hpy188III TCNNGA 2 cut(s) 329, 472
Hpy8I GTNNAC 3 cut(s) 86, 379, 412
HpyAV CCTTC 2 cut(s) 497, 658
HpyCH4V TGCA 6 cut(s) 37, 134, 528, 536, 764, 795
HpyF10VI GCNNNNNNNGC 7 cut(s) 348, 357, 366, 542, 557, 747, 792
HpyF3I CTNAG 3 cut(s) 6, 330, 690
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 5 cut(s) 144, 190, 388, 483, 555
LmnI GCTCC 1 cut(s) 347
Lsp1109I GCAGC 1 cut(s) 722
LweI GCATC 3 cut(s) 46, 515, 622
MaeI CTAG 4 cut(s) 249, 309, 357, 783
MaeIII GTNAC 2 cut(s) 583, 719
MalI GATC 5 cut(s) 146, 192, 390, 485, 557
MbiI CCGCTC 1 cut(s) 342
MboI GATC 5 cut(s) 144, 190, 388, 483, 555
MboII GAAGA 3 cut(s) 137, 683, 814
MflI RGATCY 2 cut(s) 190, 483
MluCI AATT 3 cut(s) 291, 444, 506
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 6 cut(s) 7, 52, 346, 424, 459, 479
MseI TTAA 2 cut(s) 21, 318
MslI CAYNNNNRTG 3 cut(s) 210, 550, 630
MspA1I CMGCKG 1 cut(s) 713
MspI CCGG 1 cut(s) 731
Mva1269I GAATGC 1 cut(s) 155
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 7 cut(s) 348, 357, 366, 542, 557, 747, 792
NdeII GATC 5 cut(s) 144, 190, 388, 483, 555
NheI GCTAGC 2 cut(s) 356, 782
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 646
NmuCI GTSAC 1 cut(s) 583
NspI RCATGY 1 cut(s) 209
OliI CACNNNNGTG 1 cut(s) 550
PctI GAATGC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 712, 715
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 646
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 2 cut(s) 190, 483
RsaI GTAC 1 cut(s) 597
RsaNI GTAC 1 cut(s) 596
RseI CAYNNNNRTG 3 cut(s) 210, 550, 630
SaqAI TTAA 2 cut(s) 21, 318
SatI GCNGC 2 cut(s) 711, 714
Sau3AI GATC 5 cut(s) 144, 190, 388, 483, 555
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 319
SfaNI GCATC 3 cut(s) 46, 515, 622
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 3 cut(s) 210, 550, 630
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 3 cut(s) 291, 444, 506
SsiI CCGC 2 cut(s) 340, 713
SspI AATATT 1 cut(s) 501
SspMI CTAG 4 cut(s) 249, 309, 357, 783
TaqI TCGA 1 cut(s) 159
TasI AATT 3 cut(s) 291, 444, 506
TauI GCSGC 1 cut(s) 716
Tru1I TTAA 2 cut(s) 21, 318
Tru9I TTAA 2 cut(s) 21, 318
TscAI CASTG 2 cut(s) 127, 764
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 1 cut(s) 710
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 2 cut(s) 228, 318
TspRI CASTG 2 cut(s) 127, 764
VpaK11BI GGWCC 1 cut(s) 200
XceI RCATGY 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmiI GTMKAC 2 cut(s) 85, 411
XspI CTAG 4 cut(s) 249, 309, 357, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.