Rh4BG013600

Perakine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000149
Physical Location & Seq
Reverse (-)
1819676 .. 1821914
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG013600.1

Sequence Viewer

Length: 390 bp
ATGGAGGACAAATCTCATATGCAAATCCCAAAGGTTAAACTGGGTAATCAGGGCTTGGAGTCTATTCATCCAAGGTTCAATGGCGAGAATTTGGAAAAGAACAAACTTTTCTATAACAAGCTTGCCAATCTTGCTACAAAGCATTCATGCAATGCTCCTCAATTAGCTCTGGCATGGCTTCTCCATCAGGGCAAGGACATAATCCCAATCCCCGGGACTACTAAACATAAGAACCTGGATATCAATGTCGGATCATTGGATGTGAAGCTTACAGAAGAGGATTTGAATGAAATTTGTGAAGCTGTGCCCGTTGAAAAGGTTGGAGGAGACCGAGAATTTGAAGTGTTCTCAAAATTTGTGTGGAATTATGCAAGTACACCATCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

129

Amino Acids

14.51

Weight (kDa)

6.51

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 26 - 101 2.3e-11 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 4 cut(s) 88, 291, 335, 353
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 4 cut(s) 79, 286, 314, 341
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 4 cut(s) 121, 167, 268, 302
AluI AGCT 4 cut(s) 121, 167, 268, 302
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 212
ApoI RAATTY 4 cut(s) 88, 291, 335, 353
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AsuC2I CCSGG 2 cut(s) 213, 214
AvaI CYCGRG 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 309
BccI CCATC 2 cut(s) 192, 388
BciT130I CCWGG 1 cut(s) 236
BcnI CCSGG 2 cut(s) 213, 214
BcoDI GTCTC 1 cut(s) 321
Bme1390I CCNGG 3 cut(s) 213, 214, 236
BmeT110I CYCGRG 1 cut(s) 212
BmrFI CCNGG 3 cut(s) 213, 214, 236
BmrI ACTGGG 1 cut(s) 50
BmuI ACTGGG 1 cut(s) 50
BpuMI CCSGG 2 cut(s) 213, 214
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 71, 211, 212
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 3 cut(s) 71, 211, 212
BseGI GGATG 2 cut(s) 67, 265
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMI GCAATG 1 cut(s) 157
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 2 cut(s) 147, 339
BseSI GKGCMC 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 229
BsmI GAATGC 1 cut(s) 142
Bso31I GGTCTC 1 cut(s) 321
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 251
BspPI GGATC 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 3 cut(s) 71, 211, 212
BssMI GATC 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 123
BstF5I GGATG 2 cut(s) 67, 265
BstKTI GATC 1 cut(s) 254
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 1 cut(s) 251
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 3 cut(s) 211, 212, 234
BstSLI GKGCMC 1 cut(s) 309
BtsCI GGATG 2 cut(s) 67, 265
Cac8I GCNNGC 1 cut(s) 123
Cfr9I CCCGGG 1 cut(s) 212
Csp6I GTAC 1 cut(s) 375
CviAII CATG 2 cut(s) 147, 174
CviJI RGCY 6 cut(s) 54, 121, 167, 178, 268, 302
CviKI_1 RGCY 6 cut(s) 54, 121, 167, 178, 268, 302
CviQI GTAC 1 cut(s) 375
DpnI GATC 1 cut(s) 253
DpnII GATC 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 321
Eco32I GATATC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 234
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 2 cut(s) 150, 177
FaiI YATR 8 cut(s) 18, 20, 114, 148, 175, 200, 228, 369
FaqI GGGAC 1 cut(s) 229
FatI CATG 2 cut(s) 146, 173
FauNDI CATATG 1 cut(s) 18
FokI GGATG 2 cut(s) 54, 272
HapII CCGG 1 cut(s) 213
Hin1II CATG 2 cut(s) 150, 177
HindIII AAGCTT 2 cut(s) 119, 266
HinfI GANTC 1 cut(s) 59
HpaII CCGG 1 cut(s) 213
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 377
HpyCH4V TGCA 3 cut(s) 22, 150, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
Hsp92II CATG 2 cut(s) 150, 177
Kzo9I GATC 1 cut(s) 251
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 7 cut(s) 26, 35, 155, 173, 221, 226, 248
MalI GATC 1 cut(s) 253
MboI GATC 1 cut(s) 251
MboII GAAGA 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 6 cut(s) 88, 161, 291, 335, 353, 364
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 2 cut(s) 229, 301
MnlI CCTC 3 cut(s) 168, 271, 317
MseI TTAA 1 cut(s) 36
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 3 cut(s) 213, 214, 236
Mva1269I GAATGC 1 cut(s) 142
MvaI CCWGG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 2 cut(s) 213, 214
NdeI CATATG 1 cut(s) 18
NdeII GATC 1 cut(s) 251
NlaIII CATG 2 cut(s) 150, 177
PctI GAATGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 1 cut(s) 251
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 3 cut(s) 213, 214, 236
SduI GDGCHC 1 cut(s) 309
SetI ASST 8 cut(s) 36, 77, 123, 169, 237, 270, 304, 321
SmaI CCCGGG 1 cut(s) 214
Sse9I AATT 6 cut(s) 88, 161, 291, 335, 353, 364
StyD4I CCNGG 3 cut(s) 211, 212, 234
StyI CCWWGG 1 cut(s) 71
TaqII GACCGA 1 cut(s) 345
TasI AATT 6 cut(s) 88, 161, 291, 335, 353, 364
TatI WGTACW 1 cut(s) 374
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TspDTI ATGAA 3 cut(s) 56, 135, 303
TspMI CCCGGG 1 cut(s) 212
XapI RAATTY 4 cut(s) 88, 291, 335, 353
XmaI CCCGGG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.