Rroxscaffold_6G00428660

aldo-keto reductase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
49046393 .. 49049255
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428660.1

Sequence Viewer

Length: 666 bp
ATGTTTGCTTCAACCACTTATCATAAGTACTACTGTCGTAAGTCTAGATGGGAACTAAAGAAGCTGGTGAAAGAGGGGAAAATAAAGTACATTAGATTATCTGAAGCTAGCCCAGACACAATAAGAAGGGCACATGCAGTTCATCCTATCGCTGCAGTCCAAATGGAGTGGTCTCTTTGGACTCGCGACATTGAGGAACAAATTGTCCCACTTTGCAGGGAACTTGGAATCGGGATAGTGCCATACAGCCCTCTTGGTCAAGGATTTTTTGGTGGCAGGGCAGTTGTGGAAGCTATACCATCAAGTAGTATTGTGGGATGGCTTCCTCTCTTTCAAGGAGACAACTTGGAGAAAAATAAAGACATCTATGCTAGAACACAAAAGTTGGCTGAAAAGCATGGGTGCTCCCCTGCACAACTAGCCCTTGCTTGGGTTCTTAGTCTAGGTGATGGTGTTGTACCTATCCCTGGAACAAGTAAGATAAACAAGCTTGATGAAAATATCGGTTCCTTGGGAGTGAAACTAACTGAAGAAGATATGAAAGAGATTTCCAATATGATACCTACCAATATCGTGGCAGGGAATAATGCACCGCATATTTTCATCCGCTGCTCATGGAAATTTCCAAACACACCAGCAGCAAAAGATAGCAAAATACCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

221

Amino Acids

24.57

Weight (kDa)

9.11

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 18 - 185 3.6e-39 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 186
AciI CCGC 2 cut(s) 593, 607
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 2 cut(s) 123, 549
AfaI GTAC 3 cut(s) 29, 89, 459
AfiI CCNNNNNNNGG 3 cut(s) 429, 430, 467
AgsI TTSAA 2 cut(s) 12, 335
AjnI CCWGG 1 cut(s) 466
AloI GAACNNNNNNTCC 2 cut(s) 189, 221
AluBI AGCT 4 cut(s) 64, 107, 293, 490
AluI AGCT 4 cut(s) 64, 107, 293, 490
Alw21I GWGCWC 1 cut(s) 407
Alw26I GTCTC 2 cut(s) 177, 333
ApeKI GCWGC 3 cut(s) 152, 609, 638
ApoI RAATTY 1 cut(s) 620
AsuHPI GGTGA 2 cut(s) 79, 458
AsuNHI GCTAGC 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 407
BbvI GCAGC 3 cut(s) 139, 596, 650
BccI CCATC 4 cut(s) 42, 307, 312, 443
BciT130I CCWGG 1 cut(s) 468
BcoDI GTCTC 2 cut(s) 177, 333
BfaI CTAG 5 cut(s) 45, 108, 372, 419, 443
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 3 cut(s) 153, 610, 639
BlsI GCNGC 3 cut(s) 154, 611, 640
BmcAI AGTACT 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 468
BmiI GGNNCC 1 cut(s) 508
BmrFI CCNGG 1 cut(s) 468
BmtI GCTAGC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 466, 510
Bsc4I CCNNNNNNNGG 3 cut(s) 429, 430, 467
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 2 cut(s) 466, 510
BseGI GGATG 3 cut(s) 142, 323, 603
BseLI CCNNNNNNNGG 3 cut(s) 429, 430, 467
BseSI GKGCMC 1 cut(s) 133
BseXI GCAGC 3 cut(s) 139, 596, 650
BsgI GTGCAG 1 cut(s) 396
Bsh1236I CGCG 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 407
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 3 cut(s) 429, 430, 467
BsmAI GTCTC 2 cut(s) 177, 333
BsmFI GGGAC 1 cut(s) 191
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 133, 407
Bsp68I TCGCGA 1 cut(s) 186
BspACI CCGC 2 cut(s) 593, 607
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 508
BspMAI CTGCAG 1 cut(s) 157
BspOI GCTAGC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 466, 510
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 437
BstF5I GGATG 3 cut(s) 142, 323, 603
BstFNI CGCG 1 cut(s) 186
BstMAI GTCTC 2 cut(s) 177, 333
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 1 cut(s) 468
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 466
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 133
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 3 cut(s) 139, 596, 650
BstXI CCANNNNNNTGG 1 cut(s) 574
BtsCI GGATG 3 cut(s) 142, 323, 603
BtuMI TCGCGA 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 109
Csp6I GTAC 3 cut(s) 28, 88, 458
CspCI CAANNNNNGTGG 2 cut(s) 149, 184
CviAII CATG 3 cut(s) 134, 398, 615
CviJI RGCY 9 cut(s) 64, 107, 111, 249, 293, 322, 389, 422, 490
CviKI_1 RGCY 9 cut(s) 64, 107, 111, 249, 293, 322, 389, 422, 490
CviQI GTAC 3 cut(s) 28, 88, 458
DdeI CTNAG 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 510
Eco31I GGTCTC 1 cut(s) 177
Eco57I CTGAAG 2 cut(s) 123, 549
EcoRII CCWGG 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 3 cut(s) 137, 401, 618
FaqI GGGAC 1 cut(s) 191
FatI CATG 3 cut(s) 133, 397, 614
Fnu4HI GCNGC 3 cut(s) 153, 610, 639
FokI GGATG 3 cut(s) 129, 330, 590
Fsp4HI GCNGC 3 cut(s) 153, 610, 639
FspBI CTAG 5 cut(s) 45, 108, 372, 419, 443
GluI GCNGC 3 cut(s) 153, 610, 639
Hin1II CATG 3 cut(s) 137, 401, 618
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 2 cut(s) 181, 228
HphI GGTGA 2 cut(s) 79, 458
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 3 cut(s) 45, 185, 232
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 5 cut(s) 137, 155, 216, 413, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 1 cut(s) 437
Hsp92II CATG 3 cut(s) 137, 401, 618
LmnI GCTCC 1 cut(s) 410
LpnPI CCDG 9 cut(s) 50, 126, 202, 262, 423, 453, 480, 564, 648
Lsp1109I GCAGC 3 cut(s) 139, 596, 650
MaeI CTAG 5 cut(s) 45, 108, 372, 419, 443
MboII GAAGA 2 cut(s) 542, 545
MhlI GDGCHC 2 cut(s) 133, 407
MluCI AATT 2 cut(s) 201, 620
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 4 cut(s) 67, 187, 261, 336
MseI TTAA 1 cut(s) 664
MspA1I CMGCKG 1 cut(s) 609
MspR9I CCNGG 1 cut(s) 468
MvaI CCWGG 1 cut(s) 468
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 419
NheI GCTAGC 1 cut(s) 107
NlaIII CATG 3 cut(s) 137, 401, 618
NlaIV GGNNCC 1 cut(s) 508
NruI TCGCGA 1 cut(s) 186
NspI RCATGY 1 cut(s) 137
PfeI GAWTC 1 cut(s) 228
PkrI GCNGC 3 cut(s) 154, 611, 640
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 508
PstI CTGCAG 1 cut(s) 157
RruI TCGCGA 1 cut(s) 186
RsaI GTAC 3 cut(s) 29, 89, 459
RsaNI GTAC 3 cut(s) 28, 88, 458
SaqAI TTAA 1 cut(s) 664
SatI GCNGC 3 cut(s) 153, 610, 639
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 468
SduI GDGCHC 2 cut(s) 133, 407
SetI ASST 7 cut(s) 66, 109, 295, 448, 463, 492, 565
SfcI CTRYAG 1 cut(s) 153
Sse9I AATT 2 cut(s) 201, 620
SsiI CCGC 2 cut(s) 593, 607
SspMI CTAG 5 cut(s) 45, 108, 372, 419, 443
StyD4I CCNGG 1 cut(s) 466
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 1 cut(s) 35
TasI AATT 2 cut(s) 201, 620
TatI WGTACW 2 cut(s) 27, 87
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 1 cut(s) 664
Tru9I TTAA 1 cut(s) 664
TseI GCWGC 3 cut(s) 152, 609, 638
TspDTI ATGAA 4 cut(s) 131, 510, 554, 592
XapI RAATTY 1 cut(s) 620
XbaI TCTAGA 1 cut(s) 44
XceI RCATGY 1 cut(s) 137
XspI CTAG 5 cut(s) 45, 108, 372, 419, 443
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.