RLG00000025678

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000149
Physical Location & Seq
Reverse (-)
47534859 .. 47535947
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025678

Sequence Viewer

Length: 552 bp
ATGGCTGTCCAAATTCCTAGAGTGAAACTCGGGAGTGAGGGATTTGAGGTTTCCAAGTTGGGACTTGGTTGTTTGGGACTTAGTGGATTCTACAATGCTCCACTAGCTGAAGAGGCTGGCATGTCAATAATCAAGCATGCATTCGATAATGGAATCACGTTCTTTGATACATCAGATATTTATGGACCAGGAACTAATGAAGCATTGAAGCAGCTGCCTCGAGATAAGGTTCAGGTTGCTACAAAGTTTGGTATTGTAAATATCAAGAAACCACAAGTTACACTTGATAGCAGTCCCGAGTATATACGCTCCTGCTGCGAGGCTAGCCTGAAGCGCCTTGATGTGCAGTACATTGATCTTTACTATCAGCACCGTGCAGACCCATCAGTACCAATAGAGGATACCATGGAGGAACTAAAGAAGTTGGTGAAGGAGGGGAAGATAAAGTACATCGGATTATCCGAAGCCAGCCCAGAAACAATAGAGGGCACATGCAGTTCATCCCATTACAGCTGTACAAATGGAGTGGTCTCTTTGGACTTGCGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

184

Amino Acids

20.11

Weight (kDa)

5.6

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 20 - 162 8.9e-37 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 2 cut(s) 129, 350
AfaI GTAC 4 cut(s) 350, 390, 449, 517
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 3 cut(s) 107, 214, 513
AluI AGCT 3 cut(s) 107, 214, 513
Alw26I GTCTC 1 cut(s) 535
Ama87I CYCGRG 3 cut(s) 29, 219, 296
ApeKI GCWGC 3 cut(s) 211, 214, 315
ApoI RAATTY 1 cut(s) 12
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 439
AsuNHI GCTAGC 1 cut(s) 323
AvaI CYCGRG 3 cut(s) 29, 219, 296
AvaII GGWCC 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 491
BarI GAAGNNNNNNTAC 2 cut(s) 431, 463
BbvI GCAGC 3 cut(s) 201, 223, 302
BccI CCATC 1 cut(s) 391
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 535
BfaI CTAG 3 cut(s) 18, 104, 324
BfoI RGCGCY 1 cut(s) 337
BfuI GTATCC 1 cut(s) 394
BisI GCNGC 3 cut(s) 212, 215, 316
BlsI GCNGC 3 cut(s) 213, 216, 317
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 3 cut(s) 29, 219, 296
BmgT120I GGNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 189
BmtI GCTAGC 1 cut(s) 327
BplI GAGNNNNNCTC 2 cut(s) 12, 44
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 1 cut(s) 405
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 491
BseXI GCAGC 3 cut(s) 201, 223, 302
BsgI GTGCAG 2 cut(s) 365, 396
BsiHKCI CYCGRG 3 cut(s) 29, 219, 296
BslFI GGGAC 3 cut(s) 75, 90, 279
BsmAI GTCTC 1 cut(s) 535
BsmFI GGGAC 3 cut(s) 75, 90, 279
BsmI GAATGC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 535
BsoBI CYCGRG 3 cut(s) 29, 219, 296
Bsp1286I GDGCHC 1 cut(s) 491
Bsp1407I TGTACA 1 cut(s) 515
Bsp143I GATC 1 cut(s) 355
Bsp19I CCATGG 1 cut(s) 405
BspOI GCTAGC 1 cut(s) 327
BspTNI GGTCTC 1 cut(s) 535
BsrGI TGTACA 1 cut(s) 515
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 515
BstC8I GCNNGC 4 cut(s) 118, 138, 325, 469
BstDEI CTNAG 1 cut(s) 80
BstDSI CCRYGG 1 cut(s) 405
BstF5I GGATG 1 cut(s) 500
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 5 cut(s) 104, 113, 315, 324, 333
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 3 cut(s) 124, 140, 495
BstSCI CCNGG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 491
BstV1I GCAGC 3 cut(s) 201, 223, 302
BsuI GTATCC 1 cut(s) 394
BtgI CCRYGG 1 cut(s) 405
BtsCI GGATG 1 cut(s) 500
Cac8I GCNNGC 4 cut(s) 118, 138, 325, 469
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 4 cut(s) 349, 389, 448, 516
CspCI CAANNNNNGTGG 2 cut(s) 507, 542
CviAII CATG 4 cut(s) 121, 137, 406, 492
CviJI RGCY 9 cut(s) 5, 107, 116, 214, 323, 327, 467, 471, 513
CviKI_1 RGCY 9 cut(s) 5, 107, 116, 214, 323, 327, 467, 471, 513
CviQI GTAC 4 cut(s) 349, 389, 448, 516
DdeI CTNAG 1 cut(s) 80
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 535
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 2 cut(s) 129, 350
Eco88I CYCGRG 3 cut(s) 29, 219, 296
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 4 cut(s) 124, 140, 409, 495
FaiI YATR 7 cut(s) 122, 138, 183, 303, 305, 407, 493
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FaqI GGGAC 3 cut(s) 75, 90, 279
FatI CATG 4 cut(s) 120, 136, 405, 491
Fnu4HI GCNGC 3 cut(s) 212, 215, 316
FokI GGATG 1 cut(s) 487
Fsp4HI GCNGC 3 cut(s) 212, 215, 316
FspBI CTAG 3 cut(s) 18, 104, 324
GlaI GCGC 1 cut(s) 335
GluI GCNGC 3 cut(s) 212, 215, 316
HaeII RGCGCY 1 cut(s) 337
HhaI GCGC 1 cut(s) 336
Hin1II CATG 4 cut(s) 124, 140, 409, 495
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 2 cut(s) 87, 153
HphI GGTGA 1 cut(s) 439
Hpy188I TCNGA 3 cut(s) 175, 455, 463
Hpy188III TCNNGA 4 cut(s) 31, 221, 265, 296
HpyAV CCTTC 1 cut(s) 424
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 4 cut(s) 140, 346, 377, 495
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 113, 315, 324, 333
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 4 cut(s) 124, 140, 409, 495
HspAI GCGC 1 cut(s) 334
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 2 cut(s) 103, 314
LpnPI CCDG 8 cut(s) 102, 174, 201, 218, 325, 341, 481, 486
Lsp1109I GCAGC 3 cut(s) 201, 223, 302
MaeI CTAG 3 cut(s) 18, 104, 324
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 277
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 2 cut(s) 122, 451
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 1 cut(s) 12
MnlI CCTC 9 cut(s) 31, 40, 106, 228, 313, 391, 403, 427, 478
Mph1103I ATGCAT 1 cut(s) 142
MspA1I CMGCKG 2 cut(s) 214, 513
MspR9I CCNGG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 140
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 5 cut(s) 104, 113, 315, 324, 333
NcoI CCATGG 1 cut(s) 405
NdeII GATC 1 cut(s) 355
NheI GCTAGC 1 cut(s) 323
NlaIII CATG 4 cut(s) 124, 140, 409, 495
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 3 cut(s) 124, 140, 495
PaeI GCATGC 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 87, 153
PkrI GCNGC 3 cut(s) 213, 216, 317
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspPI GGNCC 1 cut(s) 185
PvuII CAGCTG 2 cut(s) 214, 513
RsaI GTAC 4 cut(s) 350, 390, 449, 517
RsaNI GTAC 4 cut(s) 349, 389, 448, 516
SatI GCNGC 3 cut(s) 212, 215, 316
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 491
SetI ASST 7 cut(s) 51, 109, 161, 216, 231, 237, 515
Sfr274I CTCGAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
SphI GCATGC 1 cut(s) 140
Sse9I AATT 1 cut(s) 12
SspMI CTAG 3 cut(s) 18, 104, 324
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 1 cut(s) 161
TaqI TCGA 2 cut(s) 144, 220
TasI AATT 1 cut(s) 12
TatI WGTACW 3 cut(s) 348, 447, 515
TfiI GAWTC 2 cut(s) 87, 153
TseI GCWGC 3 cut(s) 211, 214, 315
TspDTI ATGAA 2 cut(s) 213, 489
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 12
XceI RCATGY 3 cut(s) 124, 140, 495
XhoI CTCGAG 1 cut(s) 219
XspI CTAG 3 cut(s) 18, 104, 324
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.