Rmu_sc0002575.1_g000015

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002575.1
OG0000149
Physical Location & Seq
Forward (+)
72512 .. 73383
872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002575.1_g000015.1.cds

Sequence Viewer

Length: 528 bp
atgcacaatgttggcgtttttctattccacatactattattcccacctctaaaaggcatacatcaatctaaaattctcataccatggtgtagggagcgtggcattggaattgttccatattgtcctcttggctgtggttttttcgcaggcaaagcagttgtcgaaagtttggatccaaatgttcctgcggccgcacatcctcggctcactggagagaacttggagaagaacagacacatataccatgcaatagaaagccttgctacaaagcaccattgctctcctgcgcaactagcactgtcgtgggttctccaccgaggtgatgacgttgtaccaattcctgggacaacaaagattaagaacttggataccaacattggctccttaagtctgtatctcaaggaagacgacctcaaggaaatctctgatgctgttccactcgaccaagtagctggtgataggaattttgaaagcataagtcatgtgcaatggaaattcgccaacactcctcaaaagactctgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

175

Amino Acids

19.4

Weight (kDa)

7.15

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
AccB7I CCANNNNNTGG 1 cut(s) 341
AciI CCGC 2 cut(s) 188, 192
AclWI GGATC 2 cut(s) 167, 180
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 3 cut(s) 72, 463, 494
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 53, 341
AflII CTTAAG 1 cut(s) 385
AgsI TTSAA 1 cut(s) 470
AjnI CCWGG 1 cut(s) 340
AleI CACNNNNGTG 2 cut(s) 301, 318
AluBI AGCT 1 cut(s) 452
AluI AGCT 1 cut(s) 452
AlwI GGATC 2 cut(s) 167, 180
AoxI GGCC 1 cut(s) 189
ApoI RAATTY 3 cut(s) 72, 463, 494
ArsI GACNNNNNNTTYG 2 cut(s) 144, 176
AspLEI GCGC 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 332, 467
BamHI GGATCC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 411
BciT130I CCWGG 1 cut(s) 342
BciVI GTATCC 1 cut(s) 361
BfaI CTAG 1 cut(s) 293
BfrI CTTAAG 1 cut(s) 385
BfuI GTATCC 1 cut(s) 361
BisI GCNGC 2 cut(s) 189, 192
BlsI GCNGC 2 cut(s) 190, 193
Bme1390I CCNGG 1 cut(s) 342
BmiI GGNNCC 2 cut(s) 174, 382
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 383, 398
BsaJI CCNNGG 4 cut(s) 83, 200, 316, 341
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 341
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 2 cut(s) 274, 494
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 4 cut(s) 83, 200, 316, 341
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 2 cut(s) 53, 341
BseMI GCAATG 2 cut(s) 274, 494
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 498
BseX3I CGGCCG 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 2 cut(s) 53, 341
BsmFI GGGAC 1 cut(s) 358
BsnI GGCC 1 cut(s) 191
Bsp143I GATC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 83
BspACI CCGC 2 cut(s) 188, 192
BspANI GGCC 1 cut(s) 191
BspLI GGNNCC 2 cut(s) 174, 382
BspPI GGATC 2 cut(s) 167, 180
BspTI CTTAAG 1 cut(s) 385
BsrDI GCAATG 2 cut(s) 274, 494
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 4 cut(s) 83, 200, 316, 341
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 300
BstAFI CTTAAG 1 cut(s) 385
BstC8I GCNNGC 1 cut(s) 148
BstDSI CCRYGG 1 cut(s) 83
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 196
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 152, 293
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 452
BstYI RGATCY 1 cut(s) 172
BstZI CGGCCG 1 cut(s) 189
BsuI GTATCC 1 cut(s) 361
BsuRI GGCC 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 83
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 207, 296
Cac8I GCNNGC 1 cut(s) 148
CciNI GCGGCCGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 332
CviAII CATG 3 cut(s) 84, 245, 482
CviJI RGCY 6 cut(s) 132, 191, 205, 258, 381, 452
CviKI_1 RGCY 6 cut(s) 132, 191, 205, 258, 381, 452
CviQI GTAC 1 cut(s) 332
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 189
EagI CGGCCG 1 cut(s) 189
EclXI CGGCCG 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 83
Eco52I CGGCCG 1 cut(s) 189
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 3 cut(s) 87, 248, 485
FaqI GGGAC 1 cut(s) 358
FatI CATG 3 cut(s) 83, 244, 481
Fnu4HI GCNGC 2 cut(s) 189, 192
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 189, 192
FspBI CTAG 1 cut(s) 293
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 1 cut(s) 288
GluI GCNGC 2 cut(s) 189, 192
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 1 cut(s) 191
HhaI GCGC 1 cut(s) 289
Hin1II CATG 3 cut(s) 87, 248, 485
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HinfI GANTC 1 cut(s) 517
HphI GGTGA 2 cut(s) 332, 467
Hpy188I TCNGA 2 cut(s) 427, 522
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 3 cut(s) 4, 248, 487
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 293
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 3 cut(s) 87, 248, 485
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 94, 386
LpnPI CCDG 7 cut(s) 132, 195, 198, 297, 327, 354, 438
LweI GCATC 1 cut(s) 418
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 327
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 2 cut(s) 238, 416
MflI RGATCY 1 cut(s) 172
MluCI AATT 6 cut(s) 72, 108, 336, 463, 494, 523
MlyI GAGTC 1 cut(s) 511
MnlI CCTC 6 cut(s) 57, 135, 210, 311, 422, 519
MseI TTAA 2 cut(s) 357, 386
MslI CAYNNNNRTG 2 cut(s) 301, 318
MspCI CTTAAG 1 cut(s) 385
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 152, 293
NcoI CCATGG 1 cut(s) 83
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 87, 248, 485
NlaIV GGNNCC 2 cut(s) 174, 382
NmeAIII GCCGAG 1 cut(s) 181
NotI GCGGCCGC 1 cut(s) 189
NsbI TGCGCA 1 cut(s) 288
OliI CACNNNNGTG 2 cut(s) 301, 318
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 2 cut(s) 190, 193
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 2 cut(s) 174, 382
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
RseI CAYNNNNRTG 2 cut(s) 301, 318
SaqAI TTAA 2 cut(s) 357, 386
SatI GCNGC 2 cut(s) 189, 192
Sau3AI GATC 1 cut(s) 172
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 1 cut(s) 342
SetI ASST 5 cut(s) 49, 322, 330, 414, 454
SfaNI GCATC 1 cut(s) 418
SmiMI CAYNNNNRTG 2 cut(s) 301, 318
SmlI CTYRAG 3 cut(s) 385, 398, 413
SmoI CTYRAG 3 cut(s) 385, 398, 413
Sse9I AATT 6 cut(s) 72, 108, 336, 463, 494, 523
SsiI CCGC 2 cut(s) 188, 192
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 1 cut(s) 330
TaqI TCGA 2 cut(s) 162, 441
TasI AATT 6 cut(s) 72, 108, 336, 463, 494, 523
TauI GCSGC 2 cut(s) 191, 194
Tru1I TTAA 2 cut(s) 357, 386
Tru9I TTAA 2 cut(s) 357, 386
TscAI CASTG 2 cut(s) 214, 303
TspRI CASTG 2 cut(s) 214, 303
Van91I CCANNNNNTGG 1 cut(s) 341
Vha464I CTTAAG 1 cut(s) 385
XagI CCTNNNNNAGG 1 cut(s) 51
XapI RAATTY 3 cut(s) 72, 463, 494
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.