Rh3CG034800

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000149
Physical Location & Seq
Forward (+)
2385784 .. 2389988
4205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG034800.1

Sequence Viewer

Length: 963 bp
ATGGGCCTGTCTGGAGTCTACAACTCTCCTCTTGCTGATGAGGATGGAATCTCAATAATAAAAGAGGCTTTCAATAAAGGAATCACTTTCTTTGACACAGCTGATGTATACGGACCTCATTTGAATGAAATTGTTGTCGGAAAGGCACTGAAGCAGTTGCCAAGAGAAAAAATTCAATTAGCCACAAAGTTTGGTATTGTTGGAAGAGCGGATCCTCCTGGTGTTACAGCCAAGGGTACTCCAGAGTATGTCCGCTCATGCTGTGAGGCTAGCTTGAAGCGTCTTGATGTGGACTACATTGATCTGTATTATCAACATCGGGTGGACACTTCGGTGCCTATAGAGGAAACTATGGGTGAGCTGAAGAAACTGGTGGAAGAAGGAAAAATAAAATATATCGGGTTATCTGAAGCCAGTCCGGACACCATAAGGAGGGCTTATGCAGTTCATCCCATCACGGCTCTACAAATGGAGTGGTCCCTCTGGACTCGTGATATTGAGGAAGAAATTGTTCCTCTTTGCAGGGAGCTTGGCATTGGAATAGTTTCATATAGTCCTCTTGGTCGTGGGTTTTTCGGTGGGAAAGCAGTTGTGGAAAGTGTGCCTTCAAATAGTTTCGTGTCGACACATCCTCGGTTCATAGGAGAAAACTTGGAGAAAAACAAGAACATTTACAATCGCATGGAAAGCCTTGCTAAGATACACCAATGCTTTCCTGCTCAACTAGCACTAGCATGGGTTCTCCACCAAGGAGATGATGTTGTACCTATCCCCGGGACAACAAAGATTAAGAACCTGGATGCAAACATTGGCTCCTTGAAGGTGAAACTTGGGAAAGAGGACTTGAAAGAAGTTTCTGGTGCTGTACCACTCGACCAAGTCGCTGGTGACAGAACTTATGGAAGCCTGATGCCTTTGCAATGGAAATTCGCCAACACTCCGCCGAAAGAATCCAAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

320

Amino Acids

35.31

Weight (kDa)

6.13

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 9 - 286 1.8e-72 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AccBSI CCGCTC 2 cut(s) 209, 255
AccI GTMKAC 3 cut(s) 18, 108, 623
AccIII TCCGGA 1 cut(s) 418
AciI CCGC 3 cut(s) 209, 253, 941
AclWI GGATC 2 cut(s) 206, 219
AcsI RAATTY 2 cut(s) 171, 926
AcuI CTGAAG 3 cut(s) 170, 383, 429
AfaI GTAC 3 cut(s) 238, 765, 867
AfiI CCNNNNNNNGG 2 cut(s) 432, 773
AgsI TTSAA 7 cut(s) 73, 124, 176, 277, 609, 820, 847
AjnI CCWGG 2 cut(s) 217, 795
AleI CACNNNNGTG 1 cut(s) 332
AluBI AGCT 4 cut(s) 101, 273, 361, 529
AluI AGCT 4 cut(s) 101, 273, 361, 529
AlwI GGATC 2 cut(s) 206, 219
Ama87I CYCGRG 1 cut(s) 773
Aor13HI TCCGGA 1 cut(s) 418
AoxI GGCC 1 cut(s) 4
ApoI RAATTY 2 cut(s) 171, 926
Asp700I GAANNNNTTC 3 cut(s) 171, 510, 544
AspS9I GGNCC 3 cut(s) 4, 113, 477
AsuC2I CCSGG 2 cut(s) 774, 775
AsuHPI GGTGA 3 cut(s) 368, 835, 899
AsuNHI GCTAGC 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 2 cut(s) 113, 477
BamHI GGATCC 1 cut(s) 211
BanI GGYRCC 1 cut(s) 334
BauI CACGAG 1 cut(s) 489
BccI CCATC 2 cut(s) 38, 461
BceAI ACGGC 1 cut(s) 474
BciT130I CCWGG 2 cut(s) 219, 797
BcnI CCSGG 2 cut(s) 774, 775
BfaI CTAG 3 cut(s) 270, 725, 731
BfmI CTRYAG 1 cut(s) 339
Bme1390I CCNGG 4 cut(s) 219, 774, 775, 797
Bme18I GGWCC 2 cut(s) 113, 477
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 3 cut(s) 4, 113, 477
BmiI GGNNCC 4 cut(s) 213, 336, 479, 814
BmrFI CCNGG 4 cut(s) 219, 774, 775, 797
BmsI GCATC 2 cut(s) 790, 900
BmtI GCTAGC 1 cut(s) 273
BpmI CTGGAG 2 cut(s) 33, 225
BpuMI CCSGG 2 cut(s) 774, 775
BsaJI CCNNGG 6 cut(s) 231, 632, 748, 772, 773, 954
BsaWI WCCGGW 1 cut(s) 418
BsaXI ACNNNNNCTCC 4 cut(s) 744, 774, 797, 827
Bsc4I CCNNNNNNNGG 2 cut(s) 432, 773
Bse1I ACTGG 2 cut(s) 375, 414
Bse3DI GCAATG 1 cut(s) 926
BseAI TCCGGA 1 cut(s) 418
BseBI CCWGG 2 cut(s) 219, 797
BseDI CCNNGG 6 cut(s) 231, 632, 748, 772, 773, 954
BseGI GGATG 4 cut(s) 49, 448, 628, 805
BseLI CCNNNNNNNGG 2 cut(s) 432, 773
BseMI GCAATG 1 cut(s) 926
BseNI ACTGG 2 cut(s) 375, 414
BseRI GAGGAG 1 cut(s) 18
BshFI GGCC 1 cut(s) 6
BshNI GGYRCC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 2 cut(s) 419, 774
BslFI GGGAC 2 cut(s) 463, 790
BslI CCNNNNNNNGG 2 cut(s) 432, 773
BsmFI GGGAC 2 cut(s) 463, 790
BsnI GGCC 1 cut(s) 6
BsoBI CYCGRG 1 cut(s) 773
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 2 cut(s) 211, 301
BspACI CCGC 3 cut(s) 209, 253, 941
BspANI GGCC 1 cut(s) 6
BspEI TCCGGA 1 cut(s) 418
BspLI GGNNCC 4 cut(s) 213, 336, 479, 814
BspOI GCTAGC 1 cut(s) 273
BspPI GGATC 2 cut(s) 206, 219
BspQI GCTCTTC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 334
BsrBI CCGCTC 2 cut(s) 209, 255
BsrDI GCAATG 1 cut(s) 926
BsrI ACTGG 2 cut(s) 375, 414
BssECI CCNNGG 6 cut(s) 231, 632, 748, 772, 773, 954
BssMI GATC 2 cut(s) 211, 301
BssNAI GTATAC 1 cut(s) 109
BssSI CACGAG 1 cut(s) 489
BssT1I CCWWGG 3 cut(s) 231, 748, 954
Bst1107I GTATAC 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 489
Bst2UI CCWGG 2 cut(s) 219, 797
Bst6I CTCTTC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 696
BstF5I GGATG 4 cut(s) 49, 448, 628, 805
BstKTI GATC 2 cut(s) 214, 304
BstMBI GATC 2 cut(s) 211, 301
BstMWI GCNNNNNNNGC 2 cut(s) 687, 725
BstNI CCWGG 2 cut(s) 219, 797
BstSCI CCNGG 4 cut(s) 217, 772, 773, 795
BstSFI CTRYAG 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 211
BstXI CCANNNNNNTGG 1 cut(s) 884
BstYI RGATCY 1 cut(s) 211
BstZ17I GTATAC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 4 cut(s) 49, 448, 628, 805
BtsIMutI CAGTG 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 271
Cfr13I GGNCC 3 cut(s) 4, 113, 477
Cfr9I CCCGGG 1 cut(s) 773
CseI GACGC 1 cut(s) 269
Csp6I GTAC 3 cut(s) 237, 764, 866
CspCI CAANNNNNGTGG 4 cut(s) 172, 207, 455, 490
CviAII CATG 3 cut(s) 258, 682, 735
CviQI GTAC 3 cut(s) 237, 764, 866
DdeI CTNAG 1 cut(s) 696
DpnI GATC 2 cut(s) 213, 303
DpnII GATC 2 cut(s) 211, 301
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
EciI GGCGGA 1 cut(s) 930
Eco130I CCWWGG 3 cut(s) 231, 748, 954
Eco47I GGWCC 2 cut(s) 113, 477
Eco57I CTGAAG 3 cut(s) 170, 383, 429
Eco88I CYCGRG 1 cut(s) 773
EcoRII CCWGG 2 cut(s) 217, 795
EcoT14I CCWWGG 3 cut(s) 231, 748, 954
ErhI CCWWGG 3 cut(s) 231, 748, 954
FaeI CATG 3 cut(s) 261, 685, 738
FalI AAGNNNNNCTT 4 cut(s) 421, 453, 589, 621
FaqI GGGAC 2 cut(s) 463, 790
FatI CATG 3 cut(s) 257, 681, 734
FblI GTMKAC 3 cut(s) 18, 108, 623
FokI GGATG 4 cut(s) 56, 435, 615, 812
FspBI CTAG 3 cut(s) 270, 725, 731
GsuI CTGGAG 2 cut(s) 33, 225
HaeIII GGCC 1 cut(s) 6
HapII CCGG 2 cut(s) 419, 774
HgaI GACGC 1 cut(s) 269
Hin1II CATG 3 cut(s) 261, 685, 738
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HinfI GANTC 5 cut(s) 15, 48, 81, 487, 950
HpaII CCGG 2 cut(s) 419, 774
HphI GGTGA 3 cut(s) 368, 835, 899
Hpy166II GTNNAC 5 cut(s) 19, 109, 292, 325, 624
Hpy188I TCNGA 3 cut(s) 140, 409, 962
Hpy188III TCNNGA 6 cut(s) 12, 242, 284, 419, 484, 491
Hpy8I GTNNAC 5 cut(s) 19, 109, 292, 325, 624
HpyAV CCTTC 3 cut(s) 374, 615, 814
HpyCH4V TGCA 4 cut(s) 443, 522, 803, 919
HpyF10VI GCNNNNNNNGC 2 cut(s) 687, 725
HpyF3I CTNAG 1 cut(s) 696
Hsp92II CATG 3 cut(s) 261, 685, 738
Kpn2I TCCGGA 1 cut(s) 418
Kzo9I GATC 2 cut(s) 211, 301
LguI GCTCTTC 1 cut(s) 199
LmnI GCTCC 2 cut(s) 526, 818
LweI GCATC 2 cut(s) 790, 900
MaeI CTAG 3 cut(s) 270, 725, 731
MaeIII GTNAC 2 cut(s) 223, 887
MalI GATC 2 cut(s) 213, 303
MbiI CCGCTC 2 cut(s) 209, 255
MboI GATC 2 cut(s) 211, 301
MboII GAAGA 4 cut(s) 216, 376, 389, 515
MflI RGATCY 1 cut(s) 211
MluCI AATT 5 cut(s) 129, 171, 176, 507, 926
MlyI GAGTC 2 cut(s) 24, 481
MmeI TCCRAC 2 cut(s) 118, 181
MroI TCCGGA 1 cut(s) 418
MroXI GAANNNNTTC 3 cut(s) 171, 510, 544
MseI TTAA 1 cut(s) 789
MslI CAYNNNNRTG 3 cut(s) 123, 332, 733
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 2 cut(s) 419, 774
MspR9I CCNGG 4 cut(s) 219, 774, 775, 797
MvaI CCWGG 2 cut(s) 219, 797
MwoI GCNNNNNNNGC 2 cut(s) 687, 725
NciI CCSGG 2 cut(s) 774, 775
NdeII GATC 2 cut(s) 211, 301
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 3 cut(s) 261, 685, 738
NlaIV GGNNCC 4 cut(s) 213, 336, 479, 814
NmuCI GTSAC 1 cut(s) 887
OliI CACNNNNGTG 1 cut(s) 332
PciSI GCTCTTC 1 cut(s) 199
PdmI GAANNNNTTC 3 cut(s) 171, 510, 544
PfeI GAWTC 3 cut(s) 48, 81, 950
PflFI GACNNNGTC 1 cut(s) 878
PleI GAGTC 2 cut(s) 23, 481
PpsI GAGTC 2 cut(s) 23, 481
Psp6I CCWGG 2 cut(s) 217, 795
PspGI CCWGG 2 cut(s) 217, 795
PspN4I GGNNCC 4 cut(s) 213, 336, 479, 814
PspPI GGNCC 3 cut(s) 4, 113, 477
PsuI RGATCY 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 878
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 3 cut(s) 238, 765, 867
RsaNI GTAC 3 cut(s) 237, 764, 866
RseI CAYNNNNRTG 3 cut(s) 123, 332, 733
SalI GTCGAC 1 cut(s) 622
SapI GCTCTTC 1 cut(s) 199
SaqAI TTAA 1 cut(s) 789
Sau3AI GATC 2 cut(s) 211, 301
Sau96I GGNCC 3 cut(s) 4, 113, 477
SchI GAGTC 2 cut(s) 24, 481
ScrFI CCNGG 4 cut(s) 219, 774, 775, 797
SetI ASST 9 cut(s) 103, 118, 275, 363, 531, 769, 798, 825, 960
SfaNI GCATC 2 cut(s) 790, 900
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 2 cut(s) 113, 477
SmaI CCCGGG 1 cut(s) 775
SmiMI CAYNNNNRTG 3 cut(s) 123, 332, 733
Sse9I AATT 5 cut(s) 129, 171, 176, 507, 926
SsiI CCGC 3 cut(s) 209, 253, 941
SspMI CTAG 3 cut(s) 270, 725, 731
StyD4I CCNGG 4 cut(s) 217, 772, 773, 795
StyI CCWWGG 3 cut(s) 231, 748, 954
TaqI TCGA 2 cut(s) 623, 873
TasI AATT 5 cut(s) 129, 171, 176, 507, 926
TfiI GAWTC 3 cut(s) 48, 81, 950
Tru1I TTAA 1 cut(s) 789
Tru9I TTAA 1 cut(s) 789
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 887
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 4 cut(s) 141, 437, 537, 628
TspGWI ACGGA 1 cut(s) 126
TspMI CCCGGG 1 cut(s) 773
TspRI CASTG 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 878
VpaK11BI GGWCC 2 cut(s) 113, 477
XapI RAATTY 2 cut(s) 171, 926
XmaI CCCGGG 1 cut(s) 773
XmiI GTMKAC 3 cut(s) 18, 108, 623
XmnI GAANNNNTTC 3 cut(s) 171, 510, 544
XspI CTAG 3 cut(s) 270, 725, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.