Prupe.1G021900_v2.0.a1

Perakine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000149
Physical Location & Seq
Reverse (-)
1509493 .. 1511659
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G021900.1

Sequence Viewer

Length: 816 bp
ATGGTTGGAAAGGCTTTGAAACAGCTTCCTAGAGAAAAGGTTCAATTAGCTACAAAATTTGGCATTATCAGTTCCGATGGTTTTCAATTTGGGGTGAATGGGACCCCAGAATATGTAAGAACATGCTGTGAAGCTAGTCTTAAGCGGCTGGATGTCAACTACATTGATCTGTACTATCAGCACCGTATTGATGTTTCAGTGCCAATTGAGGATACTATGGGGGAGCTTAAGAAGCTGGTAAATGAAGGAAAGATAAGATACATTGGTCTATCAGAAGCAAGCGCAGACACAATAAGCAGAGCCCATGCTGTTCATCCCATCACTGCTGTACAAATGGAATATTCTCTGTGGACTCGTGAAATTGAAAACGAGATCATTCCCCTTTGCCGGAAGCTTGGAATTGGGATAGTATCTTATAGCCCACTTGGACGTGGGTTCTTTGGTGGGAAGGCAGTTTTGGAGAGCTTGCCTGCAGATAGTTTGTTGTCTATGCATCCAAGATTCAATGGGGAGAATTTGGAAAAGAATAAACTTCTCTACAACAAACTTGCCAAACTTGCTGCAAAGCATGCATGCACTGCTCCACAATTAGCTCTGGCATGGCTTCTCCATCAGGGCAGTCACATAATCCCAATCCCTGGGACCACTAGGGTTAAAAACCTTGATATCAATATTGGGTCACTGGATGTGAAGCTTACAAAAGAGGATTTGAAAGAAATTTGTGATGCTGTGCCCATTGATGAAGTTGGTGGGGAGCGAGAGTATGAAGTTTTCTCAAAATATGTCTGGAATTTTGCAAATACCCCTTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

272

Amino Acids

30.18

Weight (kDa)

7.65

Isoelectric Point (pI)

29.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 638
AciI CCGC 1 cut(s) 145
AcsI RAATTY 4 cut(s) 56, 514, 717, 790
AfaI GTAC 2 cut(s) 173, 330
AfiI CCNNNNNNNGG 2 cut(s) 387, 638
AflII CTTAAG 2 cut(s) 140, 227
AgsI TTSAA 7 cut(s) 19, 44, 86, 365, 505, 712, 810
AjiI CACGTC 1 cut(s) 431
AjnI CCWGG 1 cut(s) 637
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AluBI AGCT 9 cut(s) 25, 50, 134, 226, 235, 394, 465, 593, 694
AluI AGCT 9 cut(s) 25, 50, 134, 226, 235, 394, 465, 593, 694
ApeKI GCWGC 1 cut(s) 560
ApoI RAATTY 4 cut(s) 56, 514, 717, 790
Asp700I GAANNNNTTC 1 cut(s) 39
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 102, 642
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 2 cut(s) 102, 642
BaeGI GKGCMC 1 cut(s) 735
BaeI ACNNNNGTAYC 2 cut(s) 250, 283
BanII GRGCYC 1 cut(s) 304
BauI CACGAG 1 cut(s) 354
BbvI GCAGC 1 cut(s) 547
BccI CCATC 3 cut(s) 71, 326, 618
BciT130I CCWGG 1 cut(s) 639
BciVI GTATCC 1 cut(s) 205
BfaI CTAG 3 cut(s) 30, 135, 648
BfmI CTRYAG 1 cut(s) 471
BfrI CTTAAG 2 cut(s) 140, 227
BfuI GTATCC 1 cut(s) 205
BisI GCNGC 2 cut(s) 146, 561
BlsI GCNGC 2 cut(s) 147, 562
Bme1390I CCNGG 1 cut(s) 639
Bme18I GGWCC 2 cut(s) 102, 642
BmgBI CACGTC 1 cut(s) 431
BmgT120I GGNCC 2 cut(s) 102, 642
BmiI GGNNCC 3 cut(s) 103, 104, 643
BmrFI CCNGG 1 cut(s) 639
BmsI GCATC 2 cut(s) 502, 715
BsaJI CCNNGG 2 cut(s) 637, 638
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 2 cut(s) 387, 638
Bse1I ACTGG 1 cut(s) 687
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 2 cut(s) 637, 638
BseGI GGATG 4 cut(s) 157, 313, 493, 691
BseLI CCNNNNNNNGG 2 cut(s) 387, 638
BseNI ACTGG 1 cut(s) 687
BseSI GKGCMC 1 cut(s) 735
BseXI GCAGC 1 cut(s) 547
BsiSI CCGG 1 cut(s) 388
BslFI GGGAC 2 cut(s) 115, 655
BslI CCNNNNNNNGG 2 cut(s) 387, 638
BsmFI GGGAC 2 cut(s) 115, 655
Bsp1286I GDGCHC 2 cut(s) 304, 735
Bsp1407I TGTACA 1 cut(s) 328
Bsp143I GATC 2 cut(s) 166, 372
BspACI CCGC 1 cut(s) 145
BspLI GGNNCC 3 cut(s) 103, 104, 643
BspMAI CTGCAG 1 cut(s) 475
BspTI CTTAAG 2 cut(s) 140, 227
BsrGI TGTACA 1 cut(s) 328
BsrI ACTGG 1 cut(s) 687
BssECI CCNNGG 2 cut(s) 637, 638
BssMI GATC 2 cut(s) 166, 372
BssSI CACGAG 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 1 cut(s) 185
BstAFI CTTAAG 2 cut(s) 140, 227
BstAPI GCANNNNNTGC 2 cut(s) 569, 578
BstAUI TGTACA 1 cut(s) 328
BstC8I GCNNGC 5 cut(s) 280, 467, 471, 570, 574
BstF5I GGATG 4 cut(s) 157, 313, 493, 691
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 2 cut(s) 169, 375
BstMBI GATC 2 cut(s) 166, 372
BstMWI GCNNNNNNNGC 4 cut(s) 232, 557, 569, 578
BstNI CCWGG 1 cut(s) 639
BstNSI RCATGY 3 cut(s) 126, 572, 576
BstSCI CCNGG 1 cut(s) 637
BstSFI CTRYAG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 735
BstV1I GCAGC 1 cut(s) 547
BsuI GTATCC 1 cut(s) 205
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 4 cut(s) 157, 313, 493, 691
BtsI GCAGTG 2 cut(s) 321, 576
BtsIMutI CAGTG 4 cut(s) 204, 321, 576, 680
Cac8I GCNNGC 5 cut(s) 280, 467, 471, 570, 574
CfoI GCGC 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 102, 642
Csp6I GTAC 2 cut(s) 172, 329
CviAII CATG 5 cut(s) 123, 305, 569, 573, 600
CviQI GTAC 2 cut(s) 172, 329
DpnI GATC 2 cut(s) 168, 374
DpnII GATC 2 cut(s) 166, 372
Eco24I GRGCYC 1 cut(s) 304
Eco32I GATATC 1 cut(s) 667
Eco47I GGWCC 2 cut(s) 102, 642
EcoO109I RGGNCCY 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 637
EcoRV GATATC 1 cut(s) 667
EcoT22I ATGCAT 2 cut(s) 495, 574
EcoT38I GRGCYC 1 cut(s) 304
FaeI CATG 5 cut(s) 126, 308, 572, 576, 603
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 2 cut(s) 115, 655
FatI CATG 5 cut(s) 122, 304, 568, 572, 599
Fnu4HI GCNGC 2 cut(s) 146, 561
FokI GGATG 4 cut(s) 164, 300, 480, 698
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 2 cut(s) 146, 561
FspBI CTAG 3 cut(s) 30, 135, 648
GlaI GCGC 1 cut(s) 283
GluI GCNGC 2 cut(s) 146, 561
HapII CCGG 1 cut(s) 388
HhaI GCGC 1 cut(s) 284
Hin1II CATG 5 cut(s) 126, 308, 572, 576, 603
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 2 cut(s) 392, 692
HinfI GANTC 2 cut(s) 352, 501
HpaII CCGG 1 cut(s) 388
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 157, 351
Hpy188I TCNGA 2 cut(s) 76, 274
Hpy188III TCNNGA 2 cut(s) 356, 787
Hpy8I GTNNAC 2 cut(s) 157, 351
HpyAV CCTTC 3 cut(s) 239, 442, 816
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 6 cut(s) 473, 493, 563, 572, 576, 797
HpyF10VI GCNNNNNNNGC 4 cut(s) 232, 557, 569, 578
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 5 cut(s) 126, 308, 572, 576, 603
HspAI GCGC 1 cut(s) 282
KflI GGGWCCC 1 cut(s) 102
Kzo9I GATC 2 cut(s) 166, 372
LmnI GCTCC 3 cut(s) 223, 586, 754
Lsp1109I GCAGC 1 cut(s) 547
LweI GCATC 2 cut(s) 502, 715
MaeI CTAG 3 cut(s) 30, 135, 648
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 2 cut(s) 620, 678
MalI GATC 2 cut(s) 168, 374
MboI GATC 2 cut(s) 166, 372
MfeI CAATTG 1 cut(s) 204
MhlI GDGCHC 2 cut(s) 304, 735
MlyI GAGTC 1 cut(s) 346
MnlI CCTC 2 cut(s) 202, 697
Mph1103I ATGCAT 2 cut(s) 495, 574
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 3 cut(s) 141, 228, 654
MspCI CTTAAG 2 cut(s) 140, 227
MspI CCGG 1 cut(s) 388
MspR9I CCNGG 1 cut(s) 639
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 639
MwoI GCNNNNNNNGC 4 cut(s) 232, 557, 569, 578
NdeII GATC 2 cut(s) 166, 372
NlaIII CATG 5 cut(s) 126, 308, 572, 576, 603
NlaIV GGNNCC 3 cut(s) 103, 104, 643
NmuCI GTSAC 2 cut(s) 620, 678
NsiI ATGCAT 2 cut(s) 495, 574
NspI RCATGY 3 cut(s) 126, 572, 576
PaeI GCATGC 2 cut(s) 572, 576
PasI CCCWGGG 1 cut(s) 638
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 501
PflMI CCANNNNNTGG 1 cut(s) 638
PkrI GCNGC 2 cut(s) 147, 562
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 3 cut(s) 103, 104, 643
PspPI GGNCC 2 cut(s) 102, 642
PspPPI RGGWCCY 1 cut(s) 102
PstI CTGCAG 1 cut(s) 475
RsaI GTAC 2 cut(s) 173, 330
RsaNI GTAC 2 cut(s) 172, 329
SaqAI TTAA 3 cut(s) 141, 228, 654
SatI GCNGC 2 cut(s) 146, 561
Sau3AI GATC 2 cut(s) 166, 372
Sau96I GGNCC 2 cut(s) 102, 642
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 2 cut(s) 304, 735
SfaNI GCATC 2 cut(s) 502, 715
SfcI CTRYAG 1 cut(s) 471
SinI GGWCC 2 cut(s) 102, 642
SmlI CTYRAG 2 cut(s) 140, 227
SmoI CTYRAG 2 cut(s) 140, 227
SphI GCATGC 2 cut(s) 572, 576
SsiI CCGC 1 cut(s) 145
SspI AATATT 2 cut(s) 341, 673
SspMI CTAG 3 cut(s) 30, 135, 648
StyD4I CCNGG 1 cut(s) 637
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 433
TatI WGTACW 2 cut(s) 171, 328
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 1 cut(s) 501
Tru1I TTAA 3 cut(s) 141, 228, 654
Tru9I TTAA 3 cut(s) 141, 228, 654
TscAI CASTG 4 cut(s) 204, 328, 583, 687
TseFI GTSAC 2 cut(s) 620, 678
TseI GCWGC 1 cut(s) 560
Tsp45I GTSAC 2 cut(s) 620, 678
TspDTI ATGAA 4 cut(s) 258, 302, 756, 780
TspRI CASTG 4 cut(s) 204, 328, 583, 687
Van91I CCANNNNNTGG 1 cut(s) 638
Vha464I CTTAAG 2 cut(s) 140, 227
VpaK11BI GGWCC 2 cut(s) 102, 642
XapI RAATTY 4 cut(s) 56, 514, 717, 790
XceI RCATGY 3 cut(s) 126, 572, 576
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 3 cut(s) 30, 135, 648
Zsp2I ATGCAT 2 cut(s) 495, 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.