Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000149

Physical Location & Seq

Genomic Coordinates Forward (+)

1698016 .. 1700814

Gene Structure 2799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGTTGGGTGTGGAGGCTCTTGAAGTGGGAGAAAAGAGCAAAACCAGAGAGATATGTAGGCGCTCCAAAAGGAAAAAGCTGAAATTAAATTGTTATCTGACTTATCTCTTCTCCTCCGCTCTCAATCTATTAGGAAATAATGGAATATCAAACAAATTAAACAAAACTCCAGCAAATCATCCCACAATTATTGAAGGAAGGAAAAGCGTGAGAACACAGAAAAACAAAGACCTTTATGCTAGAACACAGAAGTTAGCTGAAAAACATGGATGCTCCCCTGCACAACTCGCGCTTGCCTGGGTTCTTACTCAAGGAGATGATGTTGTACCTATTCCTGGCACAACTAAGTTAAAGAATCTGGATGATAATATTGGTTCCGTGGGAGTGAAACTTACTAAAGCAGATATGAAAGAGATTTCTGATAAGATTTCTATCAATGCAGTGGCTGGGAAAAATGCACCCGATGCCTTTTTTCGCTGCTCATGGAAGTTTGGAAATACACCACCAGCAAAAGATGGCAAAATACCATCTTCTATGTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010035 GO:0010038 GO:0016020 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

183

Amino Acids

19.93

Weight (kDa)

9.76

Isoelectric Point (pI)

26.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	49 - 143	3e-15	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000149)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica	MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica	Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis	pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis	RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata	RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora	Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii	Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa	Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha	Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana	Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	122
AccII	CGCG	1 cut(s)	293
AciI	CCGC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	26, 197
AjnI	CCWGG	2 cut(s)	299, 337
AluBI	AGCT	2 cut(s)	82, 260
AluI	AGCT	2 cut(s)	82, 260
AlwNI	CAGNNNCTG	1 cut(s)	449
ApeKI	GCWGC	1 cut(s)	480
AspLEI	GCGC	2 cut(s)	66, 295
BbvI	GCAGC	1 cut(s)	467
BccI	CCATC	2 cut(s)	512, 538
BciT130I	CCWGG	2 cut(s)	301, 339
BfaI	CTAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	67
BisI	GCNGC	1 cut(s)	481
BlsI	GCNGC	1 cut(s)	482
Bme1390I	CCNGG	2 cut(s)	301, 339
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	2 cut(s)	301, 339
BmsI	GCATC	2 cut(s)	263, 457
BpmI	CTGGAG	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	300, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	301, 339
BseDI	CCNNGG	2 cut(s)	300, 381
BseGI	GGATG	3 cut(s)	181, 278, 370
BseJI	GATNNNNATC	1 cut(s)	434
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	467
BseYI	CCCAGC	1 cut(s)	449
BsgI	GTGCAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	338
BspACI	CCGC	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	300, 381
Bst2UI	CCWGG	2 cut(s)	301, 339
Bst6I	CTCTTC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	348
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	3 cut(s)	181, 278, 370
BstFNI	CGCG	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	2 cut(s)	66, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 467
BstNI	CCWGG	2 cut(s)	301, 339
BstSCI	CCNGG	2 cut(s)	299, 337
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	467
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	3 cut(s)	181, 278, 370
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	1 cut(s)	297
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	2 cut(s)	66, 295
Csp6I	GTAC	1 cut(s)	329
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	2 cut(s)	269, 486
CviJI	RGCY	4 cut(s)	20, 82, 260, 449
CviKI_1	RGCY	4 cut(s)	20, 82, 260, 449
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	299, 337
FaeI	CATG	2 cut(s)	272, 489
FaiI	YATR	6 cut(s)	58, 240, 270, 410, 487, 539
FatI	CATG	2 cut(s)	268, 485
Fnu4HI	GCNGC	1 cut(s)	481
FokI	GGATG	3 cut(s)	168, 285, 377
Fsp4HI	GCNGC	1 cut(s)	481
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	2 cut(s)	65, 294
GluI	GCNGC	1 cut(s)	481
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	156
HaeII	RGCGCY	1 cut(s)	67
HhaI	GCGC	2 cut(s)	66, 295
Hin1II	CATG	2 cut(s)	272, 489
Hin6I	GCGC	2 cut(s)	64, 293
HinP1I	GCGC	2 cut(s)	64, 293
HinfI	GANTC	1 cut(s)	358
Hpy188I	TCNGA	2 cut(s)	102, 424
Hpy188III	TCNNGA	2 cut(s)	23, 362
HpyAV	CCTTC	2 cut(s)	191, 195
HpyCH4V	TGCA	3 cut(s)	284, 443, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 467
HpyF3I	CTNAG	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	272, 489
HspAI	GCGC	2 cut(s)	64, 293
LmnI	GCTCC	2 cut(s)	71, 281
Lsp1109I	GCAGC	1 cut(s)	467
LweI	GCATC	2 cut(s)	263, 457
MaeI	CTAG	1 cut(s)	243
MbiI	CCGCTC	1 cut(s)	122
MboII	GAAGA	2 cut(s)	103, 525
MluCI	AATT	4 cut(s)	86, 91, 158, 189
MnlI	CCTC	2 cut(s)	10, 127
MseI	TTAA	3 cut(s)	89, 161, 353
MspR9I	CCNGG	2 cut(s)	301, 339
MvaI	CCWGG	2 cut(s)	301, 339
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	290, 467
NlaIII	CATG	2 cut(s)	272, 489
NlaIV	GGNNCC	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	358
PkrI	GCNGC	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	299, 337
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	2 cut(s)	299, 337
PspN4I	GGNNCC	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	89, 161, 353
SatI	GCNGC	1 cut(s)	481
ScrFI	CCNGG	2 cut(s)	301, 339
SetI	ASST	4 cut(s)	84, 237, 262, 334
SfaNI	GCATC	2 cut(s)	263, 457
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	4 cut(s)	86, 91, 158, 189
SsiI	CCGC	1 cut(s)	120
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	299, 337
TasI	AATT	4 cut(s)	86, 91, 158, 189
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	3 cut(s)	89, 161, 353
Tru9I	TTAA	3 cut(s)	89, 161, 353
TscAI	CASTG	1 cut(s)	450
TseI	GCWGC	1 cut(s)	480
TspDTI	ATGAA	1 cut(s)	425
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	1 cut(s)	450
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.