Rroxscaffold_163G00450870

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000163
OG0000149
Physical Location & Seq
Reverse (-)
23165 .. 25000
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_163G00450870.1

Sequence Viewer

Length: 612 bp
ATGGGTGAGCTGAAGAAACTGGTGGAAGAAGGAAAAATAAAATATATCGGGTTATCTGAAGCCAGTCCGGACACCATAAGGAGGGCTCATGCAGTTCATCCCATCACGGCTCTACAAATGGAGTGGTCCCTCTGGACTCGTGATATTGAGGAAGAAATTGTTCCACTTTGCAGGGAGCTTGGCATTGGAATAGTACCATATAGTCCCCTTGGTCGTGGGTTTTTCGGTGGGAAAGCAGTTGTGGAAAGTGTGCCTTCAAATAGTTTCGTGTCGACACATCCTCGGTTCATAGGAGAAAACTTGGAGAAGAACAAGAACATTTACAATCGCATGGAAAGCCTTGCTAAGATACACCAATGCTTTCCTGCTCAACTAGCACTAGCATGGGTTCTCCACCAAGGAGATGATGTTGTACCTATCCCCGGGACAACAAAGATTAAGAACCTGGATGCAAACATTGGCTCCTTGAAGGTGAAACTTGGGGAAGAGGACTTGAAAGAAGTTTCTGGTGCTGTACCACTCGACCAAGTCGCCGGTGACAGAACTTATGGAAGCCTGATGCCTTTGCAATGGAAATTCGCCAACACTCCCCCAAAAGAATCCGCGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

203

Amino Acids

22.38

Weight (kDa)

6.22

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 1 - 169 9.6e-38 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 272
AccII CGCG 1 cut(s) 605
AccIII TCCGGA 1 cut(s) 67
AciI CCGC 2 cut(s) 603, 605
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 2 cut(s) 32, 78
AfaI GTAC 3 cut(s) 195, 414, 516
AfiI CCNNNNNNNGG 2 cut(s) 81, 422
AgsI TTSAA 3 cut(s) 258, 469, 496
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 2 cut(s) 10, 178
AluI AGCT 2 cut(s) 10, 178
Ama87I CYCGRG 1 cut(s) 422
Aor13HI TCCGGA 1 cut(s) 67
ApoI RAATTY 1 cut(s) 575
Asp700I GAANNNNTTC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 126
AsuC2I CCSGG 2 cut(s) 423, 424
AsuHPI GGTGA 3 cut(s) 17, 484, 548
AvaI CYCGRG 1 cut(s) 422
AvaII GGWCC 1 cut(s) 126
BanII GRGCYC 1 cut(s) 88
BauI CACGAG 1 cut(s) 138
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 446
BcnI CCSGG 2 cut(s) 423, 424
BfaI CTAG 2 cut(s) 374, 380
Bme1390I CCNGG 3 cut(s) 423, 424, 446
Bme18I GGWCC 1 cut(s) 126
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 2 cut(s) 128, 463
BmrFI CCNGG 3 cut(s) 423, 424, 446
BmsI GCATC 2 cut(s) 439, 549
BpuMI CCSGG 2 cut(s) 423, 424
BsaJI CCNNGG 6 cut(s) 208, 281, 397, 421, 422, 603
BsaWI WCCGGW 1 cut(s) 67
BsaXI ACNNNNNCTCC 4 cut(s) 393, 423, 446, 476
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 422
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 2 cut(s) 24, 63
Bse3DI GCAATG 1 cut(s) 575
BseAI TCCGGA 1 cut(s) 67
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 6 cut(s) 208, 281, 397, 421, 422, 603
BseGI GGATG 3 cut(s) 97, 277, 454
BseLI CCNNNNNNNGG 2 cut(s) 81, 422
BseMI GCAATG 1 cut(s) 575
BseNI ACTGG 2 cut(s) 24, 63
Bsh1236I CGCG 1 cut(s) 605
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 3 cut(s) 68, 423, 534
BslFI GGGAC 3 cut(s) 112, 189, 439
BslI CCNNNNNNNGG 2 cut(s) 81, 422
BsmFI GGGAC 3 cut(s) 112, 189, 439
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 88
Bsp13I TCCGGA 1 cut(s) 67
BspACI CCGC 2 cut(s) 603, 605
BspEI TCCGGA 1 cut(s) 67
BspFNI CGCG 1 cut(s) 605
BspLI GGNNCC 2 cut(s) 128, 463
BsrDI GCAATG 1 cut(s) 575
BsrFI RCCGGY 1 cut(s) 533
BsrI ACTGG 2 cut(s) 24, 63
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 6 cut(s) 208, 281, 397, 421, 422, 603
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 2 cut(s) 208, 397
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 446
Bst6I CTCTTC 1 cut(s) 480
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 3 cut(s) 97, 277, 454
BstFNI CGCG 1 cut(s) 605
BstMWI GCNNNNNNNGC 2 cut(s) 336, 374
BstNI CCWGG 1 cut(s) 446
BstSCI CCNGG 3 cut(s) 421, 422, 444
BstUI CGCG 1 cut(s) 605
BtgI CCRYGG 1 cut(s) 603
BtsCI GGATG 3 cut(s) 97, 277, 454
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 126
Cfr42I CCGCGG 1 cut(s) 606
Cfr9I CCCGGG 1 cut(s) 422
Csp6I GTAC 3 cut(s) 194, 413, 515
CspCI CAANNNNNGTGG 2 cut(s) 104, 139
CviAII CATG 3 cut(s) 89, 331, 384
CviJI RGCY 8 cut(s) 10, 62, 86, 110, 178, 339, 462, 555
CviKI_1 RGCY 8 cut(s) 10, 62, 86, 110, 178, 339, 462, 555
CviQI GTAC 3 cut(s) 194, 413, 515
DdeI CTNAG 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 208, 397
Eco24I GRGCYC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 32, 78
Eco88I CYCGRG 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 444
EcoT14I CCWWGG 2 cut(s) 208, 397
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 2 cut(s) 208, 397
FaeI CATG 3 cut(s) 92, 334, 387
FaiI YATR 9 cut(s) 45, 77, 90, 199, 201, 290, 332, 385, 549
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FaqI GGGAC 3 cut(s) 112, 189, 439
FatI CATG 3 cut(s) 88, 330, 383
FblI GTMKAC 1 cut(s) 272
FokI GGATG 3 cut(s) 84, 264, 461
FriOI GRGCYC 1 cut(s) 88
FspBI CTAG 2 cut(s) 374, 380
HapII CCGG 3 cut(s) 68, 423, 534
Hin1II CATG 3 cut(s) 92, 334, 387
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 2 cut(s) 136, 599
HpaII CCGG 3 cut(s) 68, 423, 534
HphI GGTGA 3 cut(s) 17, 484, 548
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 2 cut(s) 58, 611
Hpy188III TCNNGA 3 cut(s) 68, 133, 140
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 3 cut(s) 23, 264, 463
HpyCH4V TGCA 4 cut(s) 92, 171, 452, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 374
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 3 cut(s) 92, 334, 387
Kpn2I TCCGGA 1 cut(s) 67
KspI CCGCGG 1 cut(s) 606
LmnI GCTCC 2 cut(s) 175, 467
LweI GCATC 2 cut(s) 439, 549
MaeI CTAG 2 cut(s) 374, 380
MaeIII GTNAC 1 cut(s) 536
MboII GAAGA 5 cut(s) 25, 38, 164, 319, 497
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 2 cut(s) 156, 575
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 5 cut(s) 75, 140, 142, 291, 481
MroI TCCGGA 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 1 cut(s) 382
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 3 cut(s) 68, 423, 534
MspR9I CCNGG 3 cut(s) 423, 424, 446
MvaI CCWGG 1 cut(s) 446
MvnI CGCG 1 cut(s) 605
MwoI GCNNNNNNNGC 2 cut(s) 336, 374
NciI CCSGG 2 cut(s) 423, 424
NlaIII CATG 3 cut(s) 92, 334, 387
NlaIV GGNNCC 2 cut(s) 128, 463
NmuCI GTSAC 1 cut(s) 536
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 599
PflFI GACNNNGTC 1 cut(s) 527
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 128, 463
PspPI GGNCC 1 cut(s) 126
PsyI GACNNNGTC 1 cut(s) 527
RsaI GTAC 3 cut(s) 195, 414, 516
RsaNI GTAC 3 cut(s) 194, 413, 515
RseI CAYNNNNRTG 1 cut(s) 382
SacII CCGCGG 1 cut(s) 606
SalI GTCGAC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 438
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 3 cut(s) 423, 424, 446
SduI GDGCHC 1 cut(s) 88
SetI ASST 5 cut(s) 12, 180, 418, 447, 474
SfaNI GCATC 2 cut(s) 439, 549
Sfr303I CCGCGG 1 cut(s) 606
SgrAI CRCCGGYG 1 cut(s) 533
SgrBI CCGCGG 1 cut(s) 606
SinI GGWCC 1 cut(s) 126
SmaI CCCGGG 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 382
Sse9I AATT 2 cut(s) 156, 575
SsiI CCGC 2 cut(s) 603, 605
SspMI CTAG 2 cut(s) 374, 380
StyD4I CCNGG 3 cut(s) 421, 422, 444
StyI CCWWGG 2 cut(s) 208, 397
TaqI TCGA 2 cut(s) 272, 522
TasI AATT 2 cut(s) 156, 575
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TseFI GTSAC 1 cut(s) 536
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 2 cut(s) 86, 277
TspMI CCCGGG 1 cut(s) 422
Tth111I GACNNNGTC 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 126
XapI RAATTY 1 cut(s) 575
XmaI CCCGGG 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 2 cut(s) 374, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.