Rh4BG014900

Perakine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000149
Physical Location & Seq
Forward (+)
2129936 .. 2132385
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG014900.1

Sequence Viewer

Length: 609 bp
ATGAGGAAGATGGGGGAGCTTAAGAAGTTGGTAAATGAAGGAAAGATAATGTACATTGGTCTATCAGAAGCTAGTATAGACACAATAATGAGGGCTCATGCTGTTCATCCCATCACTGCTGTGCAAATGGAATATTCTCTTTGGACTCGTGATATTGAAGATGAGATTATTCCACTTTGCCGAAAGCTTGGAATTGGGATAGTGTCATATAGTCCCCTCGGTCGTGGGTTCTTCGGTGGGAAGGCAGTTCTAGAGAGCTTGCCTGCAGAAAGTTGGTTGACAACTCATCCAAGGTTCAATGGCGAGAATTTGGAAAAGAACAAACTTTTCTATAACAAACTTGTCAACCTTGCTGCCAAGCATTCGTGCACTGCTCCACAATTAGCTCTGGCATGGCTTCTCCACCAGGGCAATGACATAATCCCAATCCCCGGGACTACTAAAGTCAAGAACCTTGATATCAATGTTGGATCAGTAAATGTGAAGCTTACCGAAGAGGATTTGAGAGAAATTTCTGATGCTGTGCCCATTGACGAAGTCGGGGGCAACAGAGAATTTGAACTCTTCTCAAAATTTATGTGGAACAATGCAAATACTCCATCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

202

Amino Acids

22.56

Weight (kDa)

6.53

Isoelectric Point (pI)

30.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 4 - 173 3.9e-37 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 478
AcsI RAATTY 4 cut(s) 307, 510, 554, 572
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 431
AflII CTTAAG 1 cut(s) 20
AgsI TTSAA 3 cut(s) 158, 298, 560
AjnI CCWGG 1 cut(s) 405
AleI CACNNNNGTG 1 cut(s) 119
AluBI AGCT 6 cut(s) 19, 71, 187, 258, 386, 487
AluI AGCT 6 cut(s) 19, 71, 187, 258, 386, 487
Alw21I GWGCWC 1 cut(s) 371
Alw44I GTGCAC 1 cut(s) 367
AlwI GGATC 1 cut(s) 478
Ama87I CYCGRG 1 cut(s) 431
ApaLI GTGCAC 1 cut(s) 367
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 4 cut(s) 307, 510, 554, 572
AsuC2I CCSGG 2 cut(s) 432, 433
AvaI CYCGRG 1 cut(s) 431
BaeGI GKGCMC 2 cut(s) 371, 528
BanII GRGCYC 1 cut(s) 97
BauI CACGAG 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 371
BbvI GCAGC 1 cut(s) 340
BccI CCATC 3 cut(s) 4, 119, 607
BciT130I CCWGG 1 cut(s) 407
BcnI CCSGG 2 cut(s) 432, 433
BfaI CTAG 2 cut(s) 72, 251
BfmI CTRYAG 1 cut(s) 264
BfrI CTTAAG 1 cut(s) 20
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
Bme1390I CCNGG 3 cut(s) 407, 432, 433
BmeT110I CYCGRG 1 cut(s) 431
BmrFI CCNGG 3 cut(s) 407, 432, 433
BmsI GCATC 1 cut(s) 508
BpuMI CCSGG 2 cut(s) 432, 433
BsaJI CCNNGG 5 cut(s) 217, 290, 406, 430, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 418
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 5 cut(s) 217, 290, 406, 430, 431
BseGI GGATG 2 cut(s) 106, 286
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMI GCAATG 1 cut(s) 418
BseSI GKGCMC 2 cut(s) 371, 528
BseXI GCAGC 1 cut(s) 340
Bsh1285I CGRYCG 1 cut(s) 223
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 2 cut(s) 198, 448
BslI CCNNNNNNNGG 1 cut(s) 431
BsmFI GGGAC 2 cut(s) 198, 448
BsmI GAATGC 1 cut(s) 361
BsoBI CYCGRG 1 cut(s) 431
Bsp1286I GDGCHC 3 cut(s) 97, 371, 528
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 470
BspMAI CTGCAG 1 cut(s) 268
BspPI GGATC 1 cut(s) 478
BspTI CTTAAG 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 418
BsrGI TGTACA 1 cut(s) 51
BssECI CCNNGG 5 cut(s) 217, 290, 406, 430, 431
BssMI GATC 1 cut(s) 470
BssSI CACGAG 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 290
Bst2BI CACGAG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 407
Bst6I CTCTTC 2 cut(s) 489, 569
BstAFI CTTAAG 1 cut(s) 20
BstAUI TGTACA 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 260, 264
BstF5I GGATG 2 cut(s) 106, 286
BstKTI GATC 1 cut(s) 473
BstMBI GATC 1 cut(s) 470
BstMCI CGRYCG 1 cut(s) 223
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 3 cut(s) 405, 430, 431
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 2 cut(s) 371, 528
BstV1I GCAGC 1 cut(s) 340
BtsCI GGATG 2 cut(s) 106, 286
BtsI GCAGTG 2 cut(s) 114, 369
BtsIMutI CAGTG 2 cut(s) 114, 369
Cac8I GCNNGC 2 cut(s) 260, 264
Cfr9I CCCGGG 1 cut(s) 431
Csp6I GTAC 1 cut(s) 52
CviAII CATG 2 cut(s) 98, 393
CviJI RGCY 8 cut(s) 19, 71, 95, 187, 258, 386, 397, 487
CviKI_1 RGCY 8 cut(s) 19, 71, 95, 187, 258, 386, 397, 487
CviQI GTAC 1 cut(s) 52
DpnI GATC 1 cut(s) 472
DpnII GATC 1 cut(s) 470
Eam1104I CTCTTC 2 cut(s) 489, 569
EarI CTCTTC 2 cut(s) 489, 569
Eco130I CCWWGG 1 cut(s) 290
Eco24I GRGCYC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 460
Eco88I CYCGRG 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 405
EcoRV GATATC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 290
EcoT38I GRGCYC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 2 cut(s) 101, 396
FaiI YATR 8 cut(s) 77, 99, 208, 210, 333, 394, 419, 578
FaqI GGGAC 2 cut(s) 198, 448
FatI CATG 2 cut(s) 97, 392
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 2 cut(s) 93, 273
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 2 cut(s) 72, 251
GluI GCNGC 1 cut(s) 354
HapII CCGG 1 cut(s) 432
Hin1II CATG 2 cut(s) 101, 396
HincII GTYRAC 2 cut(s) 279, 346
HindII GTYRAC 2 cut(s) 279, 346
HindIII AAGCTT 2 cut(s) 185, 485
HinfI GANTC 1 cut(s) 145
HpaII CCGG 1 cut(s) 432
Hpy166II GTNNAC 3 cut(s) 279, 346, 369
Hpy188I TCNGA 2 cut(s) 67, 517
Hpy188III TCNNGA 3 cut(s) 149, 251, 448
Hpy8I GTNNAC 3 cut(s) 279, 346, 369
HpyAV CCTTC 2 cut(s) 32, 235
HpyCH4V TGCA 4 cut(s) 124, 266, 369, 590
Hsp92II CATG 2 cut(s) 101, 396
Kzo9I GATC 1 cut(s) 470
LmnI GCTCC 2 cut(s) 16, 379
LpnPI CCDG 5 cut(s) 276, 374, 392, 419, 445
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 1 cut(s) 508
MaeI CTAG 2 cut(s) 72, 251
MalI GATC 1 cut(s) 472
MboI GATC 1 cut(s) 470
MboII GAAGA 5 cut(s) 19, 170, 223, 506, 556
MhlI GDGCHC 3 cut(s) 97, 371, 528
MluCI AATT 6 cut(s) 192, 307, 380, 510, 554, 572
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 3 cut(s) 84, 227, 490
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 2 cut(s) 86, 119
MspCI CTTAAG 1 cut(s) 20
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 3 cut(s) 407, 432, 433
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 1 cut(s) 407
NciI CCSGG 2 cut(s) 432, 433
NdeII GATC 1 cut(s) 470
NlaIII CATG 2 cut(s) 101, 396
OliI CACNNNNGTG 1 cut(s) 119
PctI GAATGC 1 cut(s) 361
PflFI GACNNNGTC 1 cut(s) 536
PkrI GCNGC 1 cut(s) 355
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PstI CTGCAG 1 cut(s) 268
PsyI GACNNNGTC 1 cut(s) 536
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 2 cut(s) 86, 119
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 1 cut(s) 470
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 407, 432, 433
SduI GDGCHC 3 cut(s) 97, 371, 528
SetI ASST 9 cut(s) 21, 73, 189, 260, 296, 351, 388, 456, 489
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 1 cut(s) 264
SmaI CCCGGG 1 cut(s) 433
SmiMI CAYNNNNRTG 2 cut(s) 86, 119
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 6 cut(s) 192, 307, 380, 510, 554, 572
SspI AATATT 1 cut(s) 134
SspMI CTAG 2 cut(s) 72, 251
StyD4I CCNGG 3 cut(s) 405, 430, 431
StyI CCWWGG 1 cut(s) 290
TaqII GACCGA 1 cut(s) 209
TasI AATT 6 cut(s) 192, 307, 380, 510, 554, 572
TatI WGTACW 1 cut(s) 51
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 2 cut(s) 121, 376
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 2 cut(s) 51, 95
TspMI CCCGGG 1 cut(s) 431
TspRI CASTG 2 cut(s) 121, 376
Tth111I GACNNNGTC 1 cut(s) 536
Vha464I CTTAAG 1 cut(s) 20
VneI GTGCAC 1 cut(s) 367
XapI RAATTY 4 cut(s) 307, 510, 554, 572
XbaI TCTAGA 1 cut(s) 250
XmaI CCCGGG 1 cut(s) 431
XspI CTAG 2 cut(s) 72, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.