Rmu_sc0002509.1_g000009

Perakine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002509.1
OG0000149
Physical Location & Seq
Reverse (-)
34659 .. 36679
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002509.1_g000009.1.cds

Sequence Viewer

Length: 1041 bp
atggaggacaaataccagattcaaatcccaaaggttcaactgggtagtcagggattagaggtttctagattgggttttggatgtggtggactatctggaatatacaaagctcctcctctctctcatgaagctgggtgttctgtgataaaggaagcatttgataggggcatcaccttctttgacacttcagatctttatggtcataatcatgataatgaaatcatggttgggaaggctttgaaacagcttcctcgagaaaaggttcaattggctacaaaatttggcattttcaagtcggatactgactttcaaatctggataaatgggagcccggaatatgtaagagcgtgctgtgaagctagtctaaagcggctagatgttgactacattgatctgtactaccagcaccgtgtcgatgtttcagtggcaattgaggatactatgggggagcttaagaagttggtaaatgaaggaaagataatgtacattggtctatcagaagctagtatagacacaataatgagggctcatgctgtgcatcccatcactgctgtgcaaatggaatattctctttggactcgtgatattgaagatgagattattccactttgccgaaagcttggaattgggatagtgtcatatagtcccctcggtcgtgggttcttcggtgggaaggcagttctagagagcttgcctgcagaaagttggttgactactcatccaaggttcaatggcgagaatttggaaaagaacaaacttttctataacaaacttgtcaaccttgctgccaagcattcgtgcactgctcctcaattagctctggcatggcttctccaccagggcaatgacataatcccaatccccgggactactaaagtcaagaaccttgatatcaatgttggatcagtaaatgtgaagcttaccgaagaggatttgagagaaatttctgatgctgtgcccattgacgaagtcgggggcaacagagaatttgaacttttctcaaaatttatgtggaacaatgcaaatactccatcaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

346

Amino Acids

38.62

Weight (kDa)

5.66

Isoelectric Point (pI)

27.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 370
AclWI GGATC 1 cut(s) 910
AcsI RAATTY 5 cut(s) 278, 739, 942, 986, 1004
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 2 cut(s) 398, 485
AfiI CCNNNNNNNGG 1 cut(s) 863
AflII CTTAAG 1 cut(s) 452
AgsI TTSAA 9 cut(s) 23, 38, 241, 266, 292, 311, 590, 730, 992
AjnI CCWGG 1 cut(s) 837
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AleI CACNNNNGTG 1 cut(s) 551
Alw21I GWGCWC 1 cut(s) 803
Alw44I GTGCAC 1 cut(s) 799
AlwI GGATC 1 cut(s) 910
Ama87I CYCGRG 2 cut(s) 252, 863
ApaLI GTGCAC 1 cut(s) 799
ApeKI GCWGC 1 cut(s) 785
ApoI RAATTY 5 cut(s) 278, 739, 942, 986, 1004
Asp700I GAANNNNTTC 1 cut(s) 261
AsuC2I CCSGG 3 cut(s) 332, 864, 865
AsuHPI GGTGA 1 cut(s) 163
AvaI CYCGRG 2 cut(s) 252, 863
BaeGI GKGCMC 2 cut(s) 803, 960
BanII GRGCYC 2 cut(s) 332, 529
BauI CACGAG 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 803
BbvI GCAGC 1 cut(s) 772
BccI CCATC 2 cut(s) 551, 1039
BciT130I CCWGG 1 cut(s) 839
BciVI GTATCC 2 cut(s) 292, 430
BcnI CCSGG 3 cut(s) 332, 864, 865
BfaI CTAG 5 cut(s) 66, 360, 374, 504, 683
BfmI CTRYAG 1 cut(s) 696
BfrI CTTAAG 1 cut(s) 452
BfuI GTATCC 2 cut(s) 292, 430
BglII AGATCT 1 cut(s) 190
BisI GCNGC 2 cut(s) 371, 786
BlsI GCNGC 2 cut(s) 372, 787
Bme1390I CCNGG 4 cut(s) 332, 839, 864, 865
BmeT110I CYCGRG 2 cut(s) 252, 863
BmiI GGNNCC 1 cut(s) 329
BmrFI CCNGG 4 cut(s) 332, 839, 864, 865
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 3 cut(s) 177, 547, 940
BmuI ACTGGG 1 cut(s) 50
BpuMI CCSGG 3 cut(s) 332, 864, 865
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 5 cut(s) 649, 722, 838, 862, 863
Bsc4I CCNNNNNNNGG 1 cut(s) 863
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 850
Bse8I GATNNNNATC 1 cut(s) 23
BseBI CCWGG 1 cut(s) 839
BseDI CCNNGG 5 cut(s) 649, 722, 838, 862, 863
BseGI GGATG 3 cut(s) 86, 538, 718
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 863
BseMI GCAATG 1 cut(s) 850
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 3 cut(s) 102, 105, 798
BseSI GKGCMC 2 cut(s) 803, 960
BseXI GCAGC 1 cut(s) 772
BseYI CCCAGC 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 655
BsiEI CGRYCG 1 cut(s) 655
BsiHKAI GWGCWC 1 cut(s) 803
BsiHKCI CYCGRG 2 cut(s) 252, 863
BsiSI CCGG 2 cut(s) 332, 864
BslFI GGGAC 2 cut(s) 630, 880
BslI CCNNNNNNNGG 1 cut(s) 863
BsmFI GGGAC 2 cut(s) 630, 880
BsmI GAATGC 1 cut(s) 793
BsoBI CYCGRG 2 cut(s) 252, 863
Bsp1286I GDGCHC 4 cut(s) 332, 529, 803, 960
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 3 cut(s) 190, 391, 902
BspACI CCGC 1 cut(s) 370
BspHI TCATGA 2 cut(s) 124, 208
BspLI GGNNCC 1 cut(s) 329
BspMAI CTGCAG 1 cut(s) 700
BspPI GGATC 1 cut(s) 910
BspTI CTTAAG 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 850
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 5 cut(s) 649, 722, 838, 862, 863
BssMI GATC 3 cut(s) 190, 391, 902
BssSI CACGAG 1 cut(s) 579
BssT1I CCWWGG 1 cut(s) 722
Bst2BI CACGAG 1 cut(s) 579
Bst2UI CCWGG 1 cut(s) 839
Bst4CI ACNGT 1 cut(s) 410
Bst6I CTCTTC 1 cut(s) 921
BstAFI CTTAAG 1 cut(s) 452
BstAUI TGTACA 1 cut(s) 483
BstC8I GCNNGC 3 cut(s) 349, 692, 696
BstF5I GGATG 3 cut(s) 86, 538, 718
BstKTI GATC 3 cut(s) 193, 394, 905
BstMBI GATC 3 cut(s) 190, 391, 902
BstMCI CGRYCG 1 cut(s) 655
BstNI CCWGG 1 cut(s) 839
BstSCI CCNGG 4 cut(s) 330, 837, 862, 863
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 2 cut(s) 803, 960
BstV1I GCAGC 1 cut(s) 772
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuI GTATCC 2 cut(s) 292, 430
BtsCI GGATG 3 cut(s) 86, 538, 718
BtsI GCAGTG 2 cut(s) 546, 801
BtsIMutI CAGTG 3 cut(s) 429, 546, 801
Cac8I GCNNGC 3 cut(s) 349, 692, 696
CciI TCATGA 2 cut(s) 124, 208
Cfr9I CCCGGG 1 cut(s) 863
Csp6I GTAC 2 cut(s) 397, 484
CviAII CATG 5 cut(s) 125, 209, 223, 530, 825
CviQI GTAC 2 cut(s) 397, 484
DpnI GATC 3 cut(s) 192, 393, 904
DpnII GATC 3 cut(s) 190, 391, 902
Eam1104I CTCTTC 1 cut(s) 921
EarI CTCTTC 1 cut(s) 921
Eco130I CCWWGG 1 cut(s) 722
Eco24I GRGCYC 2 cut(s) 332, 529
Eco32I GATATC 1 cut(s) 892
Eco57I CTGAAG 1 cut(s) 171
Eco88I CYCGRG 2 cut(s) 252, 863
EcoRII CCWGG 1 cut(s) 837
EcoRV GATATC 1 cut(s) 892
EcoT14I CCWWGG 1 cut(s) 722
EcoT38I GRGCYC 2 cut(s) 332, 529
ErhI CCWWGG 1 cut(s) 722
FaeI CATG 5 cut(s) 128, 212, 226, 533, 828
FaqI GGGAC 2 cut(s) 630, 880
FatI CATG 5 cut(s) 124, 208, 222, 529, 824
Fnu4HI GCNGC 2 cut(s) 371, 786
FokI GGATG 3 cut(s) 93, 525, 705
FriOI GRGCYC 2 cut(s) 332, 529
Fsp4HI GCNGC 2 cut(s) 371, 786
FspBI CTAG 5 cut(s) 66, 360, 374, 504, 683
GluI GCNGC 2 cut(s) 371, 786
GsaI CCCAGC 1 cut(s) 135
HapII CCGG 2 cut(s) 332, 864
Hin1II CATG 5 cut(s) 128, 212, 226, 533, 828
HincII GTYRAC 3 cut(s) 382, 711, 778
HindII GTYRAC 3 cut(s) 382, 711, 778
HindIII AAGCTT 2 cut(s) 617, 917
HinfI GANTC 2 cut(s) 19, 577
HpaII CCGG 2 cut(s) 332, 864
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 5 cut(s) 89, 382, 711, 778, 801
Hpy188I TCNGA 4 cut(s) 190, 298, 499, 949
Hpy188III TCNNGA 9 cut(s) 66, 96, 125, 209, 254, 316, 581, 683, 880
Hpy8I GTNNAC 5 cut(s) 89, 382, 711, 778, 801
HpyAV CCTTC 4 cut(s) 184, 226, 464, 667
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 5 cut(s) 538, 556, 698, 801, 1022
Hsp92II CATG 5 cut(s) 128, 212, 226, 533, 828
Kzo9I GATC 3 cut(s) 190, 391, 902
LmnI GCTCC 4 cut(s) 115, 327, 448, 811
Lsp1109I GCAGC 1 cut(s) 772
LweI GCATC 3 cut(s) 177, 547, 940
MaeI CTAG 5 cut(s) 66, 360, 374, 504, 683
MalI GATC 3 cut(s) 192, 393, 904
MboI GATC 3 cut(s) 190, 391, 902
MboII GAAGA 3 cut(s) 602, 655, 938
MfeI CAATTG 2 cut(s) 266, 429
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 4 cut(s) 332, 529, 803, 960
MluCI AATT 9 cut(s) 266, 278, 429, 624, 739, 812, 942, 986, 1004
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 2 cut(s) 276, 880
MnlI CCTC 9 cut(s) 52, 123, 126, 261, 427, 516, 659, 819, 922
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 4 cut(s) 207, 213, 518, 551
MspCI CTTAAG 1 cut(s) 452
MspI CCGG 2 cut(s) 332, 864
MspR9I CCNGG 4 cut(s) 332, 839, 864, 865
MunI CAATTG 2 cut(s) 266, 429
Mva1269I GAATGC 1 cut(s) 793
MvaI CCWGG 1 cut(s) 839
NciI CCSGG 3 cut(s) 332, 864, 865
NdeII GATC 3 cut(s) 190, 391, 902
NlaIII CATG 5 cut(s) 128, 212, 226, 533, 828
NlaIV GGNNCC 1 cut(s) 329
OliI CACNNNNGTG 1 cut(s) 551
PaeR7I CTCGAG 1 cut(s) 252
PagI TCATGA 2 cut(s) 124, 208
PctI GAATGC 1 cut(s) 793
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 19
PflFI GACNNNGTC 1 cut(s) 968
PkrI GCNGC 2 cut(s) 372, 787
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
Psp6I CCWGG 1 cut(s) 837
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 837
PspN4I GGNNCC 1 cut(s) 329
PstI CTGCAG 1 cut(s) 700
PsuI RGATCY 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 968
RsaI GTAC 2 cut(s) 398, 485
RsaNI GTAC 2 cut(s) 397, 484
RseI CAYNNNNRTG 4 cut(s) 207, 213, 518, 551
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 2 cut(s) 371, 786
Sau3AI GATC 3 cut(s) 190, 391, 902
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 4 cut(s) 332, 839, 864, 865
SduI GDGCHC 4 cut(s) 332, 529, 803, 960
SfaNI GCATC 3 cut(s) 177, 547, 940
SfcI CTRYAG 1 cut(s) 696
Sfr274I CTCGAG 1 cut(s) 252
SlaI CTCGAG 1 cut(s) 252
SmaI CCCGGG 1 cut(s) 865
SmiMI CAYNNNNRTG 4 cut(s) 207, 213, 518, 551
SmlI CTYRAG 2 cut(s) 252, 452
SmoI CTYRAG 2 cut(s) 252, 452
Sse9I AATT 9 cut(s) 266, 278, 429, 624, 739, 812, 942, 986, 1004
SsiI CCGC 1 cut(s) 370
SspI AATATT 1 cut(s) 566
SspMI CTAG 5 cut(s) 66, 360, 374, 504, 683
StyD4I CCNGG 4 cut(s) 330, 837, 862, 863
StyI CCWWGG 1 cut(s) 722
TaaI ACNGT 1 cut(s) 410
TaqI TCGA 2 cut(s) 253, 414
TaqII GACCGA 1 cut(s) 641
TasI AATT 9 cut(s) 266, 278, 429, 624, 739, 812, 942, 986, 1004
TatI WGTACW 2 cut(s) 396, 483
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 3 cut(s) 429, 553, 808
TseI GCWGC 1 cut(s) 785
TspDTI ATGAA 3 cut(s) 141, 231, 483
TspMI CCCGGG 1 cut(s) 863
TspRI CASTG 3 cut(s) 429, 553, 808
Tth111I GACNNNGTC 1 cut(s) 968
Vha464I CTTAAG 1 cut(s) 452
VneI GTGCAC 1 cut(s) 799
XapI RAATTY 5 cut(s) 278, 739, 942, 986, 1004
XbaI TCTAGA 2 cut(s) 65, 682
XhoI CTCGAG 1 cut(s) 252
XmaI CCCGGG 1 cut(s) 863
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 5 cut(s) 66, 360, 374, 504, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.