Rh3DG035800

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000149
Physical Location & Seq
Reverse (-)
2395484 .. 2397972
2489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG035800.1

Sequence Viewer

Length: 666 bp
ATGGCTGAACAGAAGGAAATACAGATCCCAAAGGTTAAACTTGGAACTCAAGGGTTGGAGGTATCAGATGAAAATGAAGGAACACCATACATATTGTATATATGCAATGGCACGGAATATGAATGTGACAAAGATTTCATGCACAATGTTGGCGTTTATCTATTCCACATACTATTATTCCCACCTCTAAAAGGCATACATCAATCTAAAATTCTCATACCATGGTGTAGGGAGCGTGGCATTGGAATTGTTCCATATTGTCCTCTTGGCTCTGGTTTTTTCGCAGGCAAAGCAGTTGTCGAAAGTTTGGATCCAAATGTTCCTACGGCCGCACATCCTCGGCTCACTGGAGAGAACTTGGAGAAGAACAGACACATATACCATGCAATAGAAAGCCTTGCTACAAAGCACCATTGCTCTCCTGCGCAACTAGCACTGTCGTGGGTTCTCCATCGAGGTGATGACGTTGTACCAATTCCTGGGACAACAAAGATTAAGAACTTGGATACCAACATTGGCTCCTTAAGTCTGCATCTCAAGGAAGACGACCTCAAAGAAATCTCTGATGCTGTTCCACTCGACCAAGTAGCTGGTGATAGGAATTTTGAAAGCATACGTCATGTGCAATGGAAATTCGCCAACACTCCTCAAAAGACTCTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

221

Amino Acids

24.69

Weight (kDa)

6.11

Isoelectric Point (pI)

33.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 67 - 189 2.2e-21 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 426
AccB7I CCANNNNNTGG 1 cut(s) 479
AciI CCGC 1 cut(s) 330
AclWI GGATC 3 cut(s) 19, 305, 318
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 3 cut(s) 210, 601, 632
AfaI GTAC 1 cut(s) 471
AfiI CCNNNNNNNGG 2 cut(s) 191, 479
AflII CTTAAG 1 cut(s) 523
AgsI TTSAA 1 cut(s) 608
AjnI CCWGG 1 cut(s) 478
AleI CACNNNNGTG 1 cut(s) 439
AluBI AGCT 1 cut(s) 590
AluI AGCT 1 cut(s) 590
AlwI GGATC 3 cut(s) 19, 305, 318
AoxI GGCC 1 cut(s) 327
ApoI RAATTY 3 cut(s) 210, 601, 632
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
AspLEI GCGC 1 cut(s) 427
AsuHPI GGTGA 2 cut(s) 470, 605
BamHI GGATCC 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 549
BccI CCATC 1 cut(s) 459
BceAI ACGGC 1 cut(s) 342
BciT130I CCWGG 1 cut(s) 480
BciVI GTATCC 1 cut(s) 499
BfaI CTAG 1 cut(s) 431
BfrI CTTAAG 1 cut(s) 523
BfuI GTATCC 1 cut(s) 499
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme1390I CCNGG 1 cut(s) 480
BmiI GGNNCC 2 cut(s) 312, 520
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 2 cut(s) 541, 556
BpiI GAAGAC 1 cut(s) 549
BpmI CTGGAG 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 33, 521
BsaJI CCNNGG 3 cut(s) 221, 338, 479
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 479
Bse1I ACTGG 1 cut(s) 352
Bse3DI GCAATG 3 cut(s) 112, 412, 632
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 3 cut(s) 221, 338, 479
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 2 cut(s) 191, 479
BseMI GCAATG 3 cut(s) 112, 412, 632
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 1 cut(s) 636
BseX3I CGGCCG 1 cut(s) 327
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 1 cut(s) 329
BsiEI CGRYCG 1 cut(s) 330
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 2 cut(s) 191, 479
BsmFI GGGAC 1 cut(s) 496
BsnI GGCC 1 cut(s) 329
Bsp143I GATC 2 cut(s) 24, 310
Bsp19I CCATGG 1 cut(s) 221
BspACI CCGC 1 cut(s) 330
BspANI GGCC 1 cut(s) 329
BspLI GGNNCC 2 cut(s) 312, 520
BspPI GGATC 3 cut(s) 19, 305, 318
BspTI CTTAAG 1 cut(s) 523
BsrDI GCAATG 3 cut(s) 112, 412, 632
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 3 cut(s) 221, 338, 479
BssMI GATC 2 cut(s) 24, 310
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 438
BstAFI CTTAAG 1 cut(s) 523
BstC8I GCNNGC 1 cut(s) 286
BstDSI CCRYGG 1 cut(s) 221
BstENI CCTNNNNNAGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 2 cut(s) 27, 313
BstMBI GATC 2 cut(s) 24, 310
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 2 cut(s) 290, 431
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 549
BstX2I RGATCY 2 cut(s) 24, 310
BstXI CCANNNNNNTGG 1 cut(s) 590
BstYI RGATCY 2 cut(s) 24, 310
BstZI CGGCCG 1 cut(s) 327
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 1 cut(s) 329
BtgI CCRYGG 1 cut(s) 221
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 345, 434
Cac8I GCNNGC 1 cut(s) 286
CfoI GCGC 1 cut(s) 427
Csp6I GTAC 1 cut(s) 470
CviAII CATG 4 cut(s) 139, 222, 383, 620
CviJI RGCY 7 cut(s) 5, 270, 329, 343, 396, 519, 590
CviKI_1 RGCY 7 cut(s) 5, 270, 329, 343, 396, 519, 590
CviQI GTAC 1 cut(s) 470
DpnI GATC 2 cut(s) 26, 312
DpnII GATC 2 cut(s) 24, 310
EaeI YGGCCR 1 cut(s) 327
EagI CGGCCG 1 cut(s) 327
EclXI CGGCCG 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 221
Eco52I CGGCCG 1 cut(s) 327
EcoNI CCTNNNNNAGG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 4 cut(s) 142, 225, 386, 623
FaqI GGGAC 1 cut(s) 496
FatI CATG 4 cut(s) 138, 221, 382, 619
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 1 cut(s) 431
FspI TGCGCA 1 cut(s) 426
GlaI GCGC 1 cut(s) 426
GluI GCNGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 1 cut(s) 329
HhaI GCGC 1 cut(s) 427
Hin1II CATG 4 cut(s) 142, 225, 386, 623
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HinfI GANTC 1 cut(s) 655
HphI GGTGA 2 cut(s) 470, 605
Hpy188I TCNGA 3 cut(s) 67, 565, 660
HpyAV CCTTC 2 cut(s) 7, 71
HpyCH4III ACNGT 1 cut(s) 438
HpyCH4IV ACGT 2 cut(s) 465, 616
HpyCH4V TGCA 5 cut(s) 105, 142, 386, 532, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 431
HpySE526I ACGT 2 cut(s) 465, 616
Hsp92II CATG 4 cut(s) 142, 225, 386, 623
HspAI GCGC 1 cut(s) 425
Kzo9I GATC 2 cut(s) 24, 310
LmnI GCTCC 2 cut(s) 232, 524
LpnPI CCDG 7 cut(s) 258, 270, 333, 435, 465, 492, 576
LweI GCATC 2 cut(s) 541, 556
MaeI CTAG 1 cut(s) 431
MaeII ACGT 2 cut(s) 465, 616
MaeIII GTNAC 1 cut(s) 125
MalI GATC 2 cut(s) 26, 312
MboI GATC 2 cut(s) 24, 310
MboII GAAGA 2 cut(s) 376, 554
MflI RGATCY 2 cut(s) 24, 310
MluCI AATT 6 cut(s) 210, 246, 474, 601, 632, 661
MlyI GAGTC 1 cut(s) 649
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 7 cut(s) 52, 195, 273, 348, 449, 560, 657
MseI TTAA 3 cut(s) 36, 495, 524
MslI CAYNNNNRTG 2 cut(s) 439, 456
MspCI CTTAAG 1 cut(s) 523
MspR9I CCNGG 1 cut(s) 480
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 2 cut(s) 290, 431
NcoI CCATGG 1 cut(s) 221
NdeII GATC 2 cut(s) 24, 310
NlaIII CATG 4 cut(s) 142, 225, 386, 623
NlaIV GGNNCC 2 cut(s) 312, 520
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 125
NsbI TGCGCA 1 cut(s) 426
OliI CACNNNNGTG 1 cut(s) 439
PflMI CCANNNNNTGG 1 cut(s) 479
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 2 cut(s) 312, 520
PsuI RGATCY 2 cut(s) 24, 310
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
RseI CAYNNNNRTG 2 cut(s) 439, 456
SaqAI TTAA 3 cut(s) 36, 495, 524
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 2 cut(s) 24, 310
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 1 cut(s) 480
SetI ASST 8 cut(s) 36, 63, 187, 460, 468, 552, 592, 619
SfaNI GCATC 2 cut(s) 541, 556
SmiMI CAYNNNNRTG 2 cut(s) 439, 456
SmlI CTYRAG 3 cut(s) 48, 523, 536
SmoI CTYRAG 3 cut(s) 48, 523, 536
Sse9I AATT 6 cut(s) 210, 246, 474, 601, 632, 661
SsiI CCGC 1 cut(s) 330
SspMI CTAG 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 438
TaiI ACGT 2 cut(s) 468, 619
TaqI TCGA 3 cut(s) 300, 454, 579
TasI AATT 6 cut(s) 210, 246, 474, 601, 632, 661
TauI GCSGC 1 cut(s) 332
Tru1I TTAA 3 cut(s) 36, 495, 524
Tru9I TTAA 3 cut(s) 36, 495, 524
TscAI CASTG 2 cut(s) 352, 441
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 4 cut(s) 84, 90, 127, 135
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 2 cut(s) 352, 441
Van91I CCANNNNNTGG 1 cut(s) 479
Vha464I CTTAAG 1 cut(s) 523
XagI CCTNNNNNAGG 1 cut(s) 189
XapI RAATTY 3 cut(s) 210, 601, 632
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.