RchiOBHm_Chr3g0451341

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000149
Physical Location & Seq
Forward (+)
2449628 .. 2451991
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41860

Sequence Viewer

Length: 996 bp
ATGGCTGAACAGAAGGAAATACAGATCCCAAAGGTTAAACTTGGAACTCAAGGGTTGGAGGTTTCAAAATTGGGGTTTGGATGCATGGGTTTGACTTTTGCCAAGTATCCTGGTGTTGAAGAGGATGGAATCTCCATTATAAAGCATGCCTTCAGCAAAGGAATCACGTTCTTTGACACATCTGATATATATGGAACTGATCATGCCAATGAAATTCTTGTTGGCAAGGCCTTGAAGCAGTTGCCAAGAGAGAAGGTTCAATTAGCCTCGAAGTTTGGTGTTTATGCCCGGTCATGTTGCGAGGCTAGCTTGAAGCGTCTTGGTGTCGACTACATTGATCTCTACTATTATCACCGCATCGACCAAACGGTGCCAATAGAGGAAACTATGGCTGAGCTGAAGAAACTTGTGGAAGAAGGAAAGATCAAGTACATTGGGTTATCCGAAGCTAGTCCAGACACAATAAGGAGAGCGCATGCAGTTCATCCCATCACAGCTATACAAATGGAGTGGTCACTTTGGACTCGTGATATTGAAGAAGAGATTATTCCACTTTGCAGGAAGCGTGGCATTGGAATAGTTCCATATAGTCCTCTGGGTCGTGGTTTTTTCGCAGGCAAAGCAGTTGTCGAAAGTTTGGATCCAAATGTTCTTGCGGCCACACATCCTCGGCTCACTGGAGAGAACTTGGAGAAGAACAGAAACATATACCATGCAATAGAACGCCTTGCTACAAAGCACTATTGCTCTCCTGCTCAACTAGCACTGTCGTGGGTTCTCCACCAAGGCGATGACGTTGTACCAATCCCCGGGACAACAAAGATTAAGAACTTGGATACCAACATTGGCTCCTTAAGTCTAAATCTCAATGAAGACGACCTCAAAGAAATCTCTGATGCTGTTCCACTCGACCAAGTAGCTGGTGATAAGAGTTTTGAAAGCACGAGTCATGTGCAATGGAAATTCGCCAACACTCCTCCAAAGACTCTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

331

Amino Acids

36.82

Weight (kDa)

6.23

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 299 3.8e-70 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 370
AccI GTMKAC 1 cut(s) 327
AciI CCGC 2 cut(s) 355, 656
AclWI GGATC 3 cut(s) 19, 635, 648
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 2 cut(s) 213, 962
AcuI CTGAAG 2 cut(s) 136, 419
AfaI GTAC 2 cut(s) 431, 801
AfiI CCNNNNNNNGG 1 cut(s) 809
AflII CTTAAG 1 cut(s) 853
AgsI TTSAA 7 cut(s) 66, 119, 235, 260, 313, 536, 938
AjnI CCWGG 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AleI CACNNNNGTG 1 cut(s) 769
AluBI AGCT 5 cut(s) 309, 397, 449, 497, 920
AluI AGCT 5 cut(s) 309, 397, 449, 497, 920
AlwI GGATC 3 cut(s) 19, 635, 648
Ama87I CYCGRG 1 cut(s) 809
AoxI GGCC 2 cut(s) 228, 657
ApoI RAATTY 2 cut(s) 213, 962
ArsI GACNNNNNNTTYG 2 cut(s) 612, 644
AspLEI GCGC 1 cut(s) 475
AsuC2I CCSGG 3 cut(s) 289, 810, 811
AsuHPI GGTGA 2 cut(s) 344, 935
AsuNHI GCTAGC 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 809
BamHI GGATCC 1 cut(s) 640
BanI GGYRCC 1 cut(s) 370
BauI CACGAG 2 cut(s) 525, 943
BbsI GAAGAC 1 cut(s) 879
BccI CCATC 2 cut(s) 119, 497
BcgI CGANNNNNNTGC 2 cut(s) 934, 968
BciT130I CCWGG 1 cut(s) 111
BciVI GTATCC 2 cut(s) 117, 829
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 3 cut(s) 289, 810, 811
BfaI CTAG 3 cut(s) 306, 450, 761
BfrI CTTAAG 1 cut(s) 853
BfuI GTATCC 2 cut(s) 117, 829
BisI GCNGC 1 cut(s) 657
BlpI GCTNAGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 658
Bme1390I CCNGG 4 cut(s) 111, 289, 810, 811
BmeT110I CYCGRG 1 cut(s) 809
BmiI GGNNCC 3 cut(s) 372, 642, 850
BmrFI CCNGG 4 cut(s) 111, 289, 810, 811
BmsI GCATC 3 cut(s) 71, 366, 886
BmtI GCTAGC 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 879
BpmI CTGGAG 1 cut(s) 699
Bpu1102I GCTNAGC 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 33
BpuMI CCSGG 3 cut(s) 289, 810, 811
BsaJI CCNNGG 4 cut(s) 668, 784, 808, 809
BsaXI ACNNNNNCTCC 2 cut(s) 833, 863
Bsc4I CCNNNNNNNGG 1 cut(s) 809
Bse1I ACTGG 1 cut(s) 682
Bse3DI GCAATG 1 cut(s) 962
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 4 cut(s) 668, 784, 808, 809
BseGI GGATG 4 cut(s) 86, 130, 484, 664
BseLI CCNNNNNNNGG 1 cut(s) 809
BseMI GCAATG 1 cut(s) 962
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 682
BseRI GAGGAG 1 cut(s) 966
BshFI GGCC 2 cut(s) 230, 659
BshNI GGYRCC 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 809
BsiSI CCGG 2 cut(s) 289, 810
BslFI GGGAC 1 cut(s) 826
BslI CCNNNNNNNGG 1 cut(s) 809
BsmFI GGGAC 1 cut(s) 826
BsnI GGCC 2 cut(s) 230, 659
BsoBI CYCGRG 1 cut(s) 809
Bsp143I GATC 5 cut(s) 24, 199, 337, 423, 640
Bsp1720I GCTNAGC 1 cut(s) 393
BspACI CCGC 2 cut(s) 355, 656
BspANI GGCC 2 cut(s) 230, 659
BspCNI CTCAG 1 cut(s) 385
BspLI GGNNCC 3 cut(s) 372, 642, 850
BspOI GCTAGC 1 cut(s) 309
BspPI GGATC 3 cut(s) 19, 635, 648
BspT107I GGYRCC 1 cut(s) 370
BspTI CTTAAG 1 cut(s) 853
BsrDI GCAATG 1 cut(s) 962
BsrI ACTGG 1 cut(s) 682
BssECI CCNNGG 4 cut(s) 668, 784, 808, 809
BssMI GATC 5 cut(s) 24, 199, 337, 423, 640
BssSI CACGAG 2 cut(s) 525, 943
BssT1I CCWWGG 1 cut(s) 784
Bst2BI CACGAG 2 cut(s) 525, 943
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 370, 768
Bst6I CTCTTC 2 cut(s) 114, 534
BstAFI CTTAAG 1 cut(s) 853
BstC8I GCNNGC 4 cut(s) 147, 307, 477, 616
BstDEI CTNAG 1 cut(s) 393
BstF5I GGATG 4 cut(s) 86, 130, 484, 664
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 5 cut(s) 27, 202, 340, 426, 643
BstMBI GATC 5 cut(s) 24, 199, 337, 423, 640
BstMWI GCNNNNNNNGC 3 cut(s) 306, 620, 761
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 2 cut(s) 149, 479
BstSCI CCNGG 4 cut(s) 109, 287, 808, 809
BstV2I GAAGAC 1 cut(s) 879
BstX2I RGATCY 2 cut(s) 24, 640
BstXI CCANNNNNNTGG 1 cut(s) 920
BstYI RGATCY 2 cut(s) 24, 640
BsuI GTATCC 2 cut(s) 117, 829
BsuRI GGCC 2 cut(s) 230, 659
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 4 cut(s) 86, 130, 484, 664
BtsIMutI CAGTG 2 cut(s) 675, 764
Cac8I GCNNGC 4 cut(s) 147, 307, 477, 616
CfoI GCGC 1 cut(s) 475
Cfr9I CCCGGG 1 cut(s) 809
CseI GACGC 1 cut(s) 305
Csp6I GTAC 2 cut(s) 430, 800
CspCI CAANNNNNGTGG 2 cut(s) 491, 526
CviAII CATG 7 cut(s) 85, 146, 203, 294, 476, 713, 950
CviQI GTAC 2 cut(s) 430, 800
DdeI CTNAG 1 cut(s) 393
DpnI GATC 5 cut(s) 26, 201, 339, 425, 642
DpnII GATC 5 cut(s) 24, 199, 337, 423, 640
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 2 cut(s) 114, 534
EarI CTCTTC 2 cut(s) 114, 534
Eco130I CCWWGG 1 cut(s) 784
Eco147I AGGCCT 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 136, 419
Eco88I CYCGRG 1 cut(s) 809
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 784
EcoT22I ATGCAT 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 7 cut(s) 88, 149, 206, 297, 479, 716, 953
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 826
FatI CATG 7 cut(s) 84, 145, 202, 293, 475, 712, 949
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 657
FokI GGATG 4 cut(s) 93, 137, 471, 651
Fsp4HI GCNGC 1 cut(s) 657
FspBI CTAG 3 cut(s) 306, 450, 761
GlaI GCGC 1 cut(s) 474
GluI GCNGC 1 cut(s) 657
GsuI CTGGAG 1 cut(s) 699
HaeIII GGCC 2 cut(s) 230, 659
HapII CCGG 2 cut(s) 289, 810
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 475
Hin1II CATG 7 cut(s) 88, 149, 206, 297, 479, 716, 953
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 5 cut(s) 129, 162, 523, 946, 985
HpaII CCGG 2 cut(s) 289, 810
HphI GGTGA 2 cut(s) 344, 935
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 4 cut(s) 184, 445, 895, 990
Hpy188III TCNNGA 2 cut(s) 455, 527
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 4 cut(s) 7, 160, 247, 410
HpyCH4III ACNGT 2 cut(s) 370, 768
HpyCH4IV ACGT 2 cut(s) 167, 795
HpyCH4V TGCA 5 cut(s) 84, 479, 558, 716, 955
HpyF10VI GCNNNNNNNGC 3 cut(s) 306, 620, 761
HpyF3I CTNAG 1 cut(s) 393
HpySE526I ACGT 2 cut(s) 167, 795
Hsp92II CATG 7 cut(s) 88, 149, 206, 297, 479, 716, 953
HspAI GCGC 1 cut(s) 473
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 5 cut(s) 24, 199, 337, 423, 640
LmnI GCTCC 1 cut(s) 854
LweI GCATC 3 cut(s) 71, 366, 886
MaeI CTAG 3 cut(s) 306, 450, 761
MaeII ACGT 2 cut(s) 167, 795
MaeIII GTNAC 1 cut(s) 513
MalI GATC 5 cut(s) 26, 201, 339, 425, 642
MboI GATC 5 cut(s) 24, 199, 337, 423, 640
MboII GAAGA 7 cut(s) 131, 412, 425, 548, 551, 706, 884
MflI RGATCY 2 cut(s) 24, 640
MluCI AATT 5 cut(s) 68, 213, 260, 962, 991
MlyI GAGTC 3 cut(s) 517, 955, 979
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 9 cut(s) 52, 115, 277, 295, 373, 603, 678, 890, 987
Mph1103I ATGCAT 1 cut(s) 86
MseI TTAA 3 cut(s) 36, 825, 854
MslI CAYNNNNRTG 2 cut(s) 207, 769
MspCI CTTAAG 1 cut(s) 853
MspI CCGG 2 cut(s) 289, 810
MspR9I CCNGG 4 cut(s) 111, 289, 810, 811
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 306, 620, 761
NciI CCSGG 3 cut(s) 289, 810, 811
NdeII GATC 5 cut(s) 24, 199, 337, 423, 640
NheI GCTAGC 1 cut(s) 305
NlaIII CATG 7 cut(s) 88, 149, 206, 297, 479, 716, 953
NlaIV GGNNCC 3 cut(s) 372, 642, 850
NmeAIII GCCGAG 1 cut(s) 649
NmuCI GTSAC 1 cut(s) 513
NsiI ATGCAT 1 cut(s) 86
NspI RCATGY 2 cut(s) 149, 479
OliI CACNNNNGTG 1 cut(s) 769
PaeI GCATGC 2 cut(s) 149, 479
PceI AGGCCT 1 cut(s) 230
PfeI GAWTC 2 cut(s) 129, 162
PkrI GCNGC 1 cut(s) 658
PleI GAGTC 3 cut(s) 517, 954, 979
PpsI GAGTC 3 cut(s) 517, 954, 979
PsiI TTATAA 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 3 cut(s) 372, 642, 850
PsuI RGATCY 2 cut(s) 24, 640
RsaI GTAC 2 cut(s) 431, 801
RsaNI GTAC 2 cut(s) 430, 800
RseI CAYNNNNRTG 2 cut(s) 207, 769
SalI GTCGAC 1 cut(s) 326
SaqAI TTAA 3 cut(s) 36, 825, 854
SatI GCNGC 1 cut(s) 657
Sau3AI GATC 5 cut(s) 24, 199, 337, 423, 640
SchI GAGTC 3 cut(s) 517, 955, 979
ScrFI CCNGG 4 cut(s) 111, 289, 810, 811
SfaNI GCATC 3 cut(s) 71, 366, 886
SmaI CCCGGG 1 cut(s) 811
SmiMI CAYNNNNRTG 2 cut(s) 207, 769
SmlI CTYRAG 2 cut(s) 48, 853
SmoI CTYRAG 2 cut(s) 48, 853
SphI GCATGC 2 cut(s) 149, 479
Sse9I AATT 5 cut(s) 68, 213, 260, 962, 991
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 2 cut(s) 355, 656
SspMI CTAG 3 cut(s) 306, 450, 761
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 4 cut(s) 109, 287, 808, 809
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 2 cut(s) 370, 768
TaiI ACGT 2 cut(s) 170, 798
TaqI TCGA 5 cut(s) 269, 327, 360, 630, 909
TasI AATT 5 cut(s) 68, 213, 260, 962, 991
TatI WGTACW 1 cut(s) 429
TauI GCSGC 1 cut(s) 659
TfiI GAWTC 2 cut(s) 129, 162
Tru1I TTAA 3 cut(s) 36, 825, 854
Tru9I TTAA 3 cut(s) 36, 825, 854
TscAI CASTG 2 cut(s) 682, 771
TseFI GTSAC 1 cut(s) 513
Tsp45I GTSAC 1 cut(s) 513
TspDTI ATGAA 3 cut(s) 225, 473, 885
TspMI CCCGGG 1 cut(s) 809
TspRI CASTG 2 cut(s) 682, 771
Vha464I CTTAAG 1 cut(s) 853
XapI RAATTY 2 cut(s) 213, 962
XceI RCATGY 2 cut(s) 149, 479
XmaI CCCGGG 1 cut(s) 809
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 3 cut(s) 306, 450, 761
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.