pycom16g16880

Perakine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000149
Physical Location & Seq
Reverse (-)
12897084 .. 12899398
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g16880.6

Sequence Viewer

Length: 1038 bp
ATGGAAGAAAAGTCCCAGATTCAAATCCCTTTAGTTAAACTGGGCAGTCAAGGATTGGAGGTTTCTAGACTGGGTTATGGATGTGGGGAACTATCTGGGATATACAGAGGCGATAAAGTAACTCTCACTCATGGATGTGCAATCATTAAGGAAGCATTCAATAGGGGCATCACCTTCTTCGATACTTCAGATTCATACGGCCTTAAACATCACAATGAATTATTGCTTGGAGAGGCTTTGAAACAGCTTCCTAGGGAGAGAGTTCAATTGGCTACAAAGTTTGGCGTTGTCATGTCGGGCGACTATCAATTTCAAGTGAATGGAACCCCAGAGTATGTAAGAGAATGCTGTGAAGCTAGTCTTAAGCGGCTGGATGTCAGCTATATCGATCTGTACTATCAGCACCGTGTTGATATTTCAGTGCCAATTGAGGATACGATGGGGGAGCTTAAGAAGCTGCTAAATGAAGGAAAGATAAGATACATTGGTCTATCGGAAGCTAGTGCCGACACAATAACTAGAGCTCATGCTGTTCATCCCATCACTGCTGTGCAAATGGAGTACTCTCTGTGGAGTCGTGAAACTGAAAATGATATCATTCCCCTTTGCCGGAAGCTTGGAATTGGGATAGTATCATACAGTCCACTTGGTCGTGGATTCTTTGGTGGGAAGGCAATGTTAGAGAGCTTGCCTGAAGAGAGTTTGCTGTATACGCATCCTAGGTTCAATGGCAAGAATTTGGAAAAGAACAAACTTCTGTATAGCAAATTTGCCTGCCTTGCTACAAAGTATGCCTGTACTGCTCCTCAATTAGCTCTGGCGTGGCTTCTCCATCAGGACAATTATATTATTCCGATCCCTGCGACAACTCAAGTTAAGAACCTTGATATCAACATTGGATCGATGGATGTGAAGCTTACAGAAGAGGACTTGAAAGAAATTGCTGATGCTGTGCCCGTTGATGAAGTTGGTGGTGATCGAGAATTCGAATTTCTTGCGAAATATGCCTGGAACTATGCAAATACCCCATCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

346

Amino Acids

38.65

Weight (kDa)

5.71

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 710
AciI CCGC 1 cut(s) 367
AclWI GGATC 2 cut(s) 850, 907
AcsI RAATTY 4 cut(s) 736, 767, 983, 989
AcuI CTGAAG 2 cut(s) 171, 714
AfaI GTAC 3 cut(s) 395, 563, 799
AfiI CCNNNNNNNGG 1 cut(s) 609
AflII CTTAAG 2 cut(s) 362, 449
AgsI TTSAA 7 cut(s) 23, 160, 241, 266, 314, 727, 934
AjnI CCWGG 1 cut(s) 1007
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AleI CACNNNNGTG 1 cut(s) 548
Alw21I GWGCWC 1 cut(s) 526
AlwI GGATC 2 cut(s) 850, 907
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 4 cut(s) 736, 767, 983, 989
AspA2I CCTAGG 2 cut(s) 251, 719
AsuHPI GGTGA 2 cut(s) 163, 986
AsuII TTCGAA 1 cut(s) 987
AvrII CCTAGG 2 cut(s) 251, 719
BaeGI GKGCMC 1 cut(s) 957
BaeI ACNNNNGTAYC 2 cut(s) 472, 505
BanII GRGCYC 1 cut(s) 526
Bbv12I GWGCWC 1 cut(s) 526
BbvI GCAGC 1 cut(s) 444
BccI CCATC 5 cut(s) 433, 548, 840, 898, 1036
BceAI ACGGC 1 cut(s) 214
BcgI CGANNNNNNTGC 2 cut(s) 977, 1011
BciT130I CCWGG 1 cut(s) 1009
BciVI GTATCC 1 cut(s) 427
BfaI CTAG 6 cut(s) 66, 252, 357, 501, 519, 720
BfrI CTTAAG 2 cut(s) 362, 449
BfuI GTATCC 1 cut(s) 427
BisI GCNGC 2 cut(s) 368, 458
BlnI CCTAGG 2 cut(s) 251, 719
BlsI GCNGC 2 cut(s) 369, 459
BmcAI AGTACT 1 cut(s) 563
Bme1390I CCNGG 1 cut(s) 1009
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 1009
BmrI ACTGGG 2 cut(s) 50, 80
BmsI GCATC 3 cut(s) 177, 724, 937
BmuI ACTGGG 2 cut(s) 50, 80
Bpu14I TTCGAA 1 cut(s) 987
BpuEI CTTGAG 1 cut(s) 855
Bsa29I ATCGAT 2 cut(s) 387, 902
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 251, 719
Bsc4I CCNNNNNNNGG 1 cut(s) 609
Bse1I ACTGG 2 cut(s) 45, 75
Bse3DI GCAATG 1 cut(s) 681
Bse8I GATNNNNATC 1 cut(s) 23
BseBI CCWGG 1 cut(s) 1009
BseCI ATCGAT 2 cut(s) 387, 902
BseDI CCNNGG 2 cut(s) 251, 719
BseGI GGATG 6 cut(s) 86, 140, 379, 535, 715, 913
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 609
BseMI GCAATG 1 cut(s) 681
BseNI ACTGG 2 cut(s) 45, 75
BseRI GAGGAG 1 cut(s) 795
BseSI GKGCMC 1 cut(s) 957
BseXI GCAGC 1 cut(s) 444
BshFI GGCC 1 cut(s) 201
BshVI ATCGAT 2 cut(s) 387, 902
BsiHKAI GWGCWC 1 cut(s) 526
BsiSI CCGG 1 cut(s) 610
BslI CCNNNNNNNGG 1 cut(s) 609
BsmI GAATGC 2 cut(s) 155, 350
BsnI GGCC 1 cut(s) 201
Bsp119I TTCGAA 1 cut(s) 987
Bsp1286I GDGCHC 2 cut(s) 526, 957
Bsp143I GATC 4 cut(s) 388, 855, 899, 976
BspACI CCGC 1 cut(s) 367
BspANI GGCC 1 cut(s) 201
BspDI ATCGAT 2 cut(s) 387, 902
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 2 cut(s) 850, 907
BspT104I TTCGAA 1 cut(s) 987
BspTI CTTAAG 2 cut(s) 362, 449
BsrDI GCAATG 1 cut(s) 681
BsrI ACTGG 2 cut(s) 45, 75
BssECI CCNNGG 2 cut(s) 251, 719
BssMI GATC 4 cut(s) 388, 855, 899, 976
BssNAI GTATAC 1 cut(s) 711
BssT1I CCWWGG 2 cut(s) 251, 719
Bst1107I GTATAC 1 cut(s) 711
Bst2UI CCWGG 1 cut(s) 1009
Bst4CI ACNGT 2 cut(s) 407, 641
Bst6I CTCTTC 2 cut(s) 690, 918
BstAFI CTTAAG 2 cut(s) 362, 449
BstBI TTCGAA 1 cut(s) 987
BstC8I GCNNGC 2 cut(s) 689, 775
BstF5I GGATG 6 cut(s) 86, 140, 379, 535, 715, 913
BstKTI GATC 4 cut(s) 391, 858, 902, 979
BstMBI GATC 4 cut(s) 388, 855, 899, 976
BstMWI GCNNNNNNNGC 5 cut(s) 454, 712, 779, 800, 1004
BstNI CCWGG 1 cut(s) 1009
BstSCI CCNGG 1 cut(s) 1007
BstSLI GKGCMC 1 cut(s) 957
BstV1I GCAGC 1 cut(s) 444
BstZ17I GTATAC 1 cut(s) 711
Bsu15I ATCGAT 2 cut(s) 387, 902
BsuI GTATCC 1 cut(s) 427
BsuRI GGCC 1 cut(s) 201
BsuTUI ATCGAT 2 cut(s) 387, 902
BtsCI GGATG 6 cut(s) 86, 140, 379, 535, 715, 913
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 2 cut(s) 426, 543
Cac8I GCNNGC 2 cut(s) 689, 775
ClaI ATCGAT 2 cut(s) 387, 902
Csp6I GTAC 3 cut(s) 394, 562, 798
CviAII CATG 3 cut(s) 131, 292, 527
CviQI GTAC 3 cut(s) 394, 562, 798
DpnI GATC 4 cut(s) 390, 857, 901, 978
DpnII GATC 4 cut(s) 388, 855, 899, 976
Eam1104I CTCTTC 2 cut(s) 690, 918
EarI CTCTTC 2 cut(s) 690, 918
Ecl136II GAGCTC 1 cut(s) 524
Eco130I CCWWGG 2 cut(s) 251, 719
Eco24I GRGCYC 1 cut(s) 526
Eco32I GATATC 2 cut(s) 595, 889
Eco53kI GAGCTC 1 cut(s) 524
Eco57I CTGAAG 2 cut(s) 171, 714
EcoICRI GAGCTC 1 cut(s) 524
EcoRI GAATTC 1 cut(s) 983
EcoRII CCWGG 1 cut(s) 1007
EcoRV GATATC 2 cut(s) 595, 889
EcoT14I CCWWGG 2 cut(s) 251, 719
EcoT38I GRGCYC 1 cut(s) 526
ErhI CCWWGG 2 cut(s) 251, 719
FaeI CATG 3 cut(s) 134, 295, 530
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 3 cut(s) 130, 291, 526
FblI GTMKAC 1 cut(s) 710
Fnu4HI GCNGC 2 cut(s) 368, 458
FokI GGATG 6 cut(s) 93, 147, 386, 522, 702, 920
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 2 cut(s) 368, 458
FspBI CTAG 6 cut(s) 66, 252, 357, 501, 519, 720
GluI GCNGC 2 cut(s) 368, 458
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 610
Hin1II CATG 3 cut(s) 134, 295, 530
HindIII AAGCTT 2 cut(s) 614, 914
HinfI GANTC 4 cut(s) 19, 191, 574, 657
HpaII CCGG 1 cut(s) 610
HphI GGTGA 2 cut(s) 163, 986
Hpy166II GTNNAC 2 cut(s) 644, 711
Hpy188I TCNGA 3 cut(s) 190, 496, 855
Hpy188III TCNNGA 4 cut(s) 66, 578, 836, 980
Hpy8I GTNNAC 2 cut(s) 644, 711
HpyAV CCTTC 3 cut(s) 184, 461, 664
HpyCH4III ACNGT 2 cut(s) 407, 641
HpyCH4V TGCA 3 cut(s) 140, 553, 1019
HpyF10VI GCNNNNNNNGC 5 cut(s) 454, 712, 779, 800, 1004
Hsp92II CATG 3 cut(s) 134, 295, 530
Kzo9I GATC 4 cut(s) 388, 855, 899, 976
LmnI GCTCC 2 cut(s) 445, 808
Lsp1109I GCAGC 1 cut(s) 444
LweI GCATC 3 cut(s) 177, 724, 937
MaeI CTAG 6 cut(s) 66, 252, 357, 501, 519, 720
MaeIII GTNAC 1 cut(s) 118
MalI GATC 4 cut(s) 390, 857, 901, 978
MboI GATC 4 cut(s) 388, 855, 899, 976
MboII GAAGA 4 cut(s) 17, 169, 707, 935
MfeI CAATTG 2 cut(s) 266, 426
MhlI GDGCHC 2 cut(s) 526, 957
MlyI GAGTC 1 cut(s) 583
MnlI CCTC 6 cut(s) 52, 101, 226, 424, 816, 919
MseI TTAA 6 cut(s) 36, 147, 204, 363, 450, 876
MslI CAYNNNNRTG 3 cut(s) 135, 213, 548
MspCI CTTAAG 2 cut(s) 362, 449
MspI CCGG 1 cut(s) 610
MspR9I CCNGG 1 cut(s) 1009
MunI CAATTG 2 cut(s) 266, 426
Mva1269I GAATGC 2 cut(s) 155, 350
MvaI CCWGG 1 cut(s) 1009
MwoI GCNNNNNNNGC 5 cut(s) 454, 712, 779, 800, 1004
NdeII GATC 4 cut(s) 388, 855, 899, 976
NlaIII CATG 3 cut(s) 134, 295, 530
NlaIV GGNNCC 1 cut(s) 325
NspV TTCGAA 1 cut(s) 987
OliI CACNNNNGTG 1 cut(s) 548
PctI GAATGC 2 cut(s) 155, 350
PfeI GAWTC 3 cut(s) 19, 191, 657
PkrI GCNGC 2 cut(s) 369, 459
PleI GAGTC 1 cut(s) 582
PpsI GAGTC 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 526
Psp6I CCWGG 1 cut(s) 1007
PspGI CCWGG 1 cut(s) 1007
PspN4I GGNNCC 1 cut(s) 325
RsaI GTAC 3 cut(s) 395, 563, 799
RsaNI GTAC 3 cut(s) 394, 562, 798
RseI CAYNNNNRTG 3 cut(s) 135, 213, 548
SacI GAGCTC 1 cut(s) 526
SaqAI TTAA 6 cut(s) 36, 147, 204, 363, 450, 876
SatI GCNGC 2 cut(s) 368, 458
Sau3AI GATC 4 cut(s) 388, 855, 899, 976
ScaI AGTACT 1 cut(s) 563
SchI GAGTC 1 cut(s) 583
ScrFI CCNGG 1 cut(s) 1009
SduI GDGCHC 2 cut(s) 526, 957
SfaNI GCATC 3 cut(s) 177, 724, 937
SfuI TTCGAA 1 cut(s) 987
SmiMI CAYNNNNRTG 3 cut(s) 135, 213, 548
SmlI CTYRAG 3 cut(s) 362, 449, 870
SmoI CTYRAG 3 cut(s) 362, 449, 870
SsiI CCGC 1 cut(s) 367
SspMI CTAG 6 cut(s) 66, 252, 357, 501, 519, 720
SstI GAGCTC 1 cut(s) 526
StyD4I CCNGG 1 cut(s) 1007
StyI CCWWGG 2 cut(s) 251, 719
TaaI ACNGT 2 cut(s) 407, 641
TaqI TCGA 5 cut(s) 180, 387, 902, 979, 987
TatI WGTACW 3 cut(s) 393, 561, 797
TauI GCSGC 1 cut(s) 370
TfiI GAWTC 3 cut(s) 19, 191, 657
Tru1I TTAA 6 cut(s) 36, 147, 204, 363, 450, 876
Tru9I TTAA 6 cut(s) 36, 147, 204, 363, 450, 876
TscAI CASTG 2 cut(s) 426, 550
TseI GCWGC 1 cut(s) 457
TspDTI ATGAA 5 cut(s) 183, 231, 480, 524, 978
TspRI CASTG 2 cut(s) 426, 550
Vha464I CTTAAG 2 cut(s) 362, 449
XapI RAATTY 4 cut(s) 736, 767, 983, 989
XbaI TCTAGA 1 cut(s) 65
XmaJI CCTAGG 2 cut(s) 251, 719
XmiI GTMKAC 1 cut(s) 710
XspI CTAG 6 cut(s) 66, 252, 357, 501, 519, 720
ZrmI AGTACT 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.