Rorug02G0632500

Calcium-binding EF hand family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000149
Physical Location & Seq
Forward (+)
74714162 .. 74718923
4762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0632500.1

Sequence Viewer

Length: 1758 bp
ATGGAACCTCCAACTGGGTTTTTGGCTACTTTGTGGAACTTCATCTGTTTTCTGCCTTACTTTATTGGGCTTCTTCTTCTTGGCACGGTTAAAGGAATTTTCTTCTGTCCATTGATTTGCCTTATCATTGGAGTTGGAAACACGGCTATCATATTGGGTCTTTGGCCTGTTCACATTGTTTGGACCTATTATTGCATCTTGAGCGCTAAACAATTTGGGCCAGTTCTGAAGATTGTTGTCTGCATAACTATACTACCTCTCCAATTGATCTTGTGGCCAGTGGTTGGAATTGTTGGAAGTGTATTGGGTGGAGCAGCATATGGCTTACTTTCACCAGTATTTGAAACTTTTCAAGCTGTTGGAGAAGGGAAGACCAATCAGTTGTACCACTGCTTTTACGATGGAACTGTAAGCACGGTTAAGGGAAGCTTCACTGTTGTGAGGGATTTTAAGGATGTCTGTTACCATACATACTTCTCAGTTATGGATGACCTGAAAAGTCAGGGTCCTCCAAAATATTATGAAATCAGGTTGCTTTATCTTCCTGGGGCTGTTCTAGCAGGGGTCCTTGGTTTCATGGTTGATATGCCATTGATCTCATTTATTGCCATTTACAAAAGCCCATACATGCTCTTCAAGGGGTGGCACCGTTTGTTTCATGACCTTATTGGTCGGGAGGGCCCTTTCTTGGAAACAATATGTGTTCCGTTTGCAGGTCTTGCTATCCTAGTCTGGCCATTGGCTGTTGTCGGGGCAGTTTTGGCATCTATGGTGGCCAGCATATTTCATGGTGCTTATGCTGGAGTGGTAGTTTATCAGGAGTCCTCTCTTTGGATGGGGCTTCGCTATATCATTGCATCCTTAGCCATATATGATGAATACAGCAATGATATCCTTGACATGCCAGAAGGATCCTGCTTTCCAAGGTTAACCTACCGAAAAAAGGCTGAATCGCTTCCAACCACCTCTCGCGCACCTTCTTTCTCAAAGCATAGATCTTTGAAAAATGCTCCTTCATTCAATAATCCTATGATTGAGTTGAAGCCCCTTGAGGTAATGGATAGCTTATTTAGGGAGTGCAAACGATATGGGGAAATCCTGGTTTCTGAAGGAACAATAACACGTCAAGACCTCGAAGATGCCAAGTCTAGTAAAGGAAGTAGAGTTATTAGCACCGGCTTGCCAGCTTGTTGCCTTCTTCAGACACTCTTGCGATCTGCAAAAGCCAATTCGGCGGGCTTATTGTTAATTGACAACTGTACTGAGATAACTAGCTCAAACAGACCAAAAGACACAATCTTTGATTGGTTTCTCAACCCCCTCTTGATCATCAAGGATCAGATCAAAGCAGAAAAGCTTACTGAGTCAGAAGAGTACTACCTCGGCAAATTAGTTCTATTGAGTGGTGATCCTATGAGGTTGAAAAACTCAAACATCGGCTCACCACCTGATTCAGAGCGTAAACAAGCTGAACTTGATGCATTGGCTCGAAGGCTCCAAGGTATTACTAAATCAATCTCAAGATACCCAACTTATAGGCGCCGGTATGAGGATCTTGTCAAAGCCTTATCTGATGAACTTGGCCAGAATAATGATGGTAGTATCAAACCAACCAGCGGCCCTAATACCATTGCAAGATCAAAGAGTGCCTTTGCCCGGTTGTTCACCCAGAAATCTTTTAGTTTTACAAGCAAAACAAGCAATCACGGGGGTGATCCAGAGTCACAAGAAGTCGAAAGAGATGTGACCATTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_5 EF-hand_7

Protein Analysis

585

Amino Acids

64.92

Weight (kDa)

8.41

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 704
AccB1I GGYRCC 2 cut(s) 645, 1539
AccB7I CCANNNNNTGG 1 cut(s) 284
AccII CGCG 1 cut(s) 972
AciI CCGC 2 cut(s) 1235, 1617
AclWI GGATC 6 cut(s) 906, 919, 1344, 1403, 1560, 1709
AcoI YGGCCR 4 cut(s) 275, 734, 774, 1582
AcsI RAATTY 1 cut(s) 96
AcuI CTGAAG 3 cut(s) 248, 1128, 1184
AcyI GRCGYC 1 cut(s) 1540
AfaI GTAC 3 cut(s) 386, 1261, 1376
AfeI AGCGCT 1 cut(s) 205
AfiI CCNNNNNNNGG 9 cut(s) 14, 284, 688, 713, 831, 943, 1549, 1616, 1656
AflIII ACRYGT 1 cut(s) 1121
AgsI TTSAA 7 cut(s) 344, 353, 637, 1003, 1021, 1042, 1423
AjiI CACGTC 1 cut(s) 1124
AjnI CCWGG 2 cut(s) 544, 1098
AleI CACNNNNGTG 2 cut(s) 437, 1710
AluBI AGCT 7 cut(s) 356, 429, 1065, 1187, 1275, 1357, 1469
AluI AGCT 7 cut(s) 356, 429, 1065, 1187, 1275, 1357, 1469
AlwI GGATC 6 cut(s) 906, 919, 1344, 1403, 1560, 1709
Aor51HI AGCGCT 1 cut(s) 205
AoxI GGCC 8 cut(s) 164, 218, 275, 679, 734, 774, 1582, 1618
ApaI GGGCCC 1 cut(s) 683
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 96
ArsI GACNNNNNNTTYG 2 cut(s) 1283, 1315
Asp700I GAANNNNTTC 2 cut(s) 348, 954
AspLEI GCGC 3 cut(s) 206, 974, 1542
AspS9I GGNCC 7 cut(s) 183, 218, 506, 565, 679, 680, 1619
AsuC2I CCSGG 1 cut(s) 1657
AsuHPI GGTGA 5 cut(s) 324, 1418, 1434, 1657, 1724
AvaII GGWCC 3 cut(s) 183, 506, 565
BaeGI GKGCMC 1 cut(s) 683
BalI TGGCCA 4 cut(s) 277, 736, 776, 1584
BamHI GGATCC 1 cut(s) 911
BanI GGYRCC 2 cut(s) 645, 1539
BanII GRGCYC 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 326
BccI CCATC 3 cut(s) 395, 829, 1589
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 2 cut(s) 546, 1100
BclI TGATCA 1 cut(s) 1326
BcnI CCSGG 1 cut(s) 1657
BfaI CTAG 4 cut(s) 557, 728, 1149, 1272
BfoI RGCGCY 2 cut(s) 207, 1543
BfuAI ACCTGC 1 cut(s) 704
BglI GCCNNNNNGGC 1 cut(s) 1232
BglII AGATCT 1 cut(s) 995
BisI GCNGC 2 cut(s) 315, 1618
BlsI GCNGC 2 cut(s) 316, 1619
BmcAI AGTACT 1 cut(s) 1376
Bme1390I CCNGG 3 cut(s) 546, 1100, 1657
Bme18I GGWCC 3 cut(s) 183, 506, 565
BmgBI CACGTC 1 cut(s) 1124
BmgT120I GGNCC 7 cut(s) 183, 218, 506, 565, 679, 680, 1619
BmiI GGNNCC 8 cut(s) 6, 507, 566, 647, 681, 913, 1496, 1541
BmrFI CCNGG 3 cut(s) 546, 1100, 1657
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 5 cut(s) 204, 773, 866, 1129, 1468
BmuI ACTGGG 1 cut(s) 24
BpiI GAAGAC 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 822
Bpu10I CCTNAGC 1 cut(s) 862
BpuEI CTTGAG 3 cut(s) 220, 1070, 1504
BpuMI CCSGG 1 cut(s) 1657
BsaHI GRCGYC 1 cut(s) 1540
BsaJI CCNNGG 5 cut(s) 545, 568, 923, 1381, 1498
BsaXI ACNNNNNCTCC 4 cut(s) 243, 273, 795, 825
Bsc4I CCNNNNNNNGG 9 cut(s) 14, 284, 688, 713, 831, 943, 1549, 1616, 1656
Bse118I RCCGGY 2 cut(s) 1175, 1542
Bse1I ACTGG 4 cut(s) 19, 221, 278, 335
Bse3DI GCAATG 4 cut(s) 852, 892, 1629, 1749
BseBI CCWGG 2 cut(s) 546, 1100
BseDI CCNNGG 5 cut(s) 545, 568, 923, 1381, 1498
BseGI GGATG 4 cut(s) 460, 493, 840, 857
BseLI CCNNNNNNNGG 9 cut(s) 14, 284, 688, 713, 831, 943, 1549, 1616, 1656
BseMI GCAATG 4 cut(s) 852, 892, 1629, 1749
BseMII CTCAG 3 cut(s) 492, 1254, 1353
BseNI ACTGG 4 cut(s) 19, 221, 278, 335
BseSI GKGCMC 1 cut(s) 683
BseXI GCAGC 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 972
BshFI GGCC 8 cut(s) 166, 220, 277, 681, 736, 776, 1584, 1620
BshNI GGYRCC 2 cut(s) 645, 1539
BsiSI CCGG 3 cut(s) 1176, 1543, 1657
BslI CCNNNNNNNGG 9 cut(s) 14, 284, 688, 713, 831, 943, 1549, 1616, 1656
BsnI GGCC 8 cut(s) 166, 220, 277, 681, 736, 776, 1584, 1620
Bsp120I GGGCCC 1 cut(s) 679
Bsp1286I GDGCHC 1 cut(s) 683
BspACI CCGC 2 cut(s) 1235, 1617
BspANI GGCC 8 cut(s) 166, 220, 277, 681, 736, 776, 1584, 1620
BspCNI CTCAG 3 cut(s) 491, 1255, 1354
BspFNI CGCG 1 cut(s) 972
BspHI TCATGA 1 cut(s) 658
BspLI GGNNCC 8 cut(s) 6, 507, 566, 647, 681, 913, 1496, 1541
BspMI ACCTGC 1 cut(s) 704
BspPI GGATC 6 cut(s) 906, 919, 1344, 1403, 1560, 1709
BspQI GCTCTTC 1 cut(s) 638
BspT107I GGYRCC 2 cut(s) 645, 1539
BsrDI GCAATG 4 cut(s) 852, 892, 1629, 1749
BsrFI RCCGGY 2 cut(s) 1175, 1542
BsrI ACTGG 4 cut(s) 19, 221, 278, 335
BssAI RCCGGY 2 cut(s) 1175, 1542
BssECI CCNNGG 5 cut(s) 545, 568, 923, 1381, 1498
BssNI GRCGYC 1 cut(s) 1540
BssT1I CCWWGG 3 cut(s) 568, 923, 1498
Bst2UI CCWGG 2 cut(s) 546, 1100
Bst4CI ACNGT 6 cut(s) 88, 409, 418, 436, 650, 1259
Bst6I CTCTTC 2 cut(s) 638, 1365
BstACI GRCGYC 1 cut(s) 1540
BstAPI GCANNNNNTGC 1 cut(s) 719
BstC8I GCNNGC 4 cut(s) 778, 1181, 1185, 1237
BstDEI CTNAG 4 cut(s) 478, 862, 1263, 1362
BstF5I GGATG 4 cut(s) 460, 493, 840, 857
BstFNI CGCG 1 cut(s) 972
BstH2I RGCGCY 2 cut(s) 207, 1543
BstHHI GCGC 3 cut(s) 206, 974, 1542
BstMWI GCNNNNNNNGC 7 cut(s) 201, 557, 719, 761, 863, 1232, 1698
BstNI CCWGG 2 cut(s) 546, 1100
BstNSI RCATGY 2 cut(s) 631, 904
BstSCI CCNGG 3 cut(s) 544, 1098, 1655
BstSLI GKGCMC 1 cut(s) 683
BstUI CGCG 1 cut(s) 972
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 3 cut(s) 911, 995, 1552
BstYI RGATCY 3 cut(s) 911, 995, 1552
BsuRI GGCC 8 cut(s) 166, 220, 277, 681, 736, 776, 1584, 1620
BtrI CACGTC 1 cut(s) 1124
BtsCI GGATG 4 cut(s) 460, 493, 840, 857
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 3 cut(s) 285, 388, 432
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 4 cut(s) 778, 1181, 1185, 1237
CciI TCATGA 1 cut(s) 658
CfoI GCGC 3 cut(s) 206, 974, 1542
Cfr10I RCCGGY 2 cut(s) 1175, 1542
Cfr13I GGNCC 7 cut(s) 183, 218, 506, 565, 679, 680, 1619
Csp6I GTAC 3 cut(s) 385, 1260, 1375
CviAII CATG 5 cut(s) 577, 628, 659, 788, 901
CviQI GTAC 3 cut(s) 385, 1260, 1375
DdeI CTNAG 4 cut(s) 478, 862, 1263, 1362
DinI GGCGCC 1 cut(s) 1541
EaeI YGGCCR 4 cut(s) 275, 734, 774, 1582
Eam1104I CTCTTC 2 cut(s) 638, 1365
EarI CTCTTC 2 cut(s) 638, 1365
Eco130I CCWWGG 3 cut(s) 568, 923, 1498
Eco24I GRGCYC 1 cut(s) 683
Eco32I GATATC 1 cut(s) 892
Eco47I GGWCC 3 cut(s) 183, 506, 565
Eco47III AGCGCT 1 cut(s) 205
Eco57I CTGAAG 3 cut(s) 248, 1128, 1184
EcoO109I RGGNCCY 4 cut(s) 506, 565, 679, 680
EcoRII CCWGG 2 cut(s) 544, 1098
EcoRV GATATC 1 cut(s) 892
EcoT14I CCWWGG 3 cut(s) 568, 923, 1498
EcoT22I ATGCAT 1 cut(s) 1483
EcoT38I GRGCYC 1 cut(s) 683
EgeI GGCGCC 1 cut(s) 1541
EheI GGCGCC 1 cut(s) 1541
ErhI CCWWGG 3 cut(s) 568, 923, 1498
FaeI CATG 5 cut(s) 580, 631, 662, 791, 904
FalI AAGNNNNNCTT 6 cut(s) 413, 445, 1458, 1490, 1634, 1666
FatI CATG 5 cut(s) 576, 627, 658, 787, 900
FauI CCCGC 1 cut(s) 1228
FauNDI CATATG 1 cut(s) 319
FbaI TGATCA 1 cut(s) 1326
Fnu4HI GCNGC 2 cut(s) 315, 1618
FokI GGATG 4 cut(s) 467, 500, 844, 847
FriOI GRGCYC 1 cut(s) 683
Fsp4HI GCNGC 2 cut(s) 315, 1618
FspBI CTAG 4 cut(s) 557, 728, 1149, 1272
GlaI GCGC 3 cut(s) 205, 973, 1541
GluI GCNGC 2 cut(s) 315, 1618
GsuI CTGGAG 1 cut(s) 822
HaeII RGCGCY 2 cut(s) 207, 1543
HaeIII GGCC 8 cut(s) 166, 220, 277, 681, 736, 776, 1584, 1620
HapII CCGG 3 cut(s) 1176, 1543, 1657
HhaI GCGC 3 cut(s) 206, 974, 1542
Hin1I GRCGYC 1 cut(s) 1540
Hin1II CATG 5 cut(s) 580, 631, 662, 791, 904
Hin6I GCGC 3 cut(s) 204, 972, 1540
HinP1I GCGC 3 cut(s) 204, 972, 1540
HincII GTYRAC 1 cut(s) 930
HindII GTYRAC 1 cut(s) 930
HindIII AAGCTT 2 cut(s) 427, 1355
HinfI GANTC 5 cut(s) 821, 950, 1364, 1451, 1721
HpaI GTTAAC 1 cut(s) 930
HpaII CCGG 3 cut(s) 1176, 1543, 1657
HphI GGTGA 5 cut(s) 324, 1418, 1434, 1657, 1724
Hpy166II GTNNAC 4 cut(s) 172, 930, 1463, 1665
Hpy188I TCNGA 7 cut(s) 228, 1108, 1203, 1341, 1369, 1456, 1573
Hpy188III TCNNGA 8 cut(s) 199, 659, 674, 818, 1127, 1324, 1521, 1718
Hpy8I GTNNAC 4 cut(s) 172, 930, 1463, 1665
HpyAV CCTTC 7 cut(s) 359, 902, 987, 1023, 1103, 1205, 1485
HpyCH4III ACNGT 6 cut(s) 88, 409, 418, 436, 650, 1259
HpyCH4IV ACGT 1 cut(s) 1123
HpyCH4V TGCA 9 cut(s) 195, 243, 713, 857, 1080, 1220, 1481, 1634, 1754
HpyF10VI GCNNNNNNNGC 7 cut(s) 201, 557, 719, 761, 863, 1232, 1698
HpyF3I CTNAG 4 cut(s) 478, 862, 1263, 1362
HpySE526I ACGT 1 cut(s) 1123
Hsp92I GRCGYC 1 cut(s) 1540
Hsp92II CATG 5 cut(s) 580, 631, 662, 791, 904
HspAI GCGC 3 cut(s) 204, 972, 1540
KasI GGCGCC 1 cut(s) 1539
Ksp22I TGATCA 1 cut(s) 1326
KspAI GTTAAC 1 cut(s) 930
LguI GCTCTTC 1 cut(s) 638
LmnI GCTCC 3 cut(s) 311, 1015, 1500
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 5 cut(s) 204, 773, 866, 1129, 1468
MaeI CTAG 4 cut(s) 557, 728, 1149, 1272
MaeII ACGT 1 cut(s) 1123
MaeIII GTNAC 3 cut(s) 461, 1722, 1744
MfeI CAATTG 1 cut(s) 263
MflI RGATCY 3 cut(s) 911, 995, 1552
MhlI GDGCHC 1 cut(s) 683
MlsI TGGCCA 4 cut(s) 277, 736, 776, 1584
MluCI AATT 7 cut(s) 96, 212, 263, 288, 1228, 1248, 1388
MluNI TGGCCA 4 cut(s) 277, 736, 776, 1584
Mly113I GGCGCC 1 cut(s) 1540
MlyI GAGTC 3 cut(s) 830, 1373, 1730
MmeI TCCRAC 6 cut(s) 35, 115, 265, 274, 340, 983
Mox20I TGGCCA 4 cut(s) 277, 736, 776, 1584
Mph1103I ATGCAT 1 cut(s) 1483
MroXI GAANNNNTTC 2 cut(s) 348, 954
MscI TGGCCA 4 cut(s) 277, 736, 776, 1584
MseI TTAA 5 cut(s) 90, 420, 450, 929, 1247
MslI CAYNNNNRTG 2 cut(s) 437, 1710
Msp20I TGGCCA 4 cut(s) 277, 736, 776, 1584
MspA1I CMGCKG 1 cut(s) 1617
MspI CCGG 3 cut(s) 1176, 1543, 1657
MspR9I CCNGG 3 cut(s) 546, 1100, 1657
MunI CAATTG 1 cut(s) 263
MvaI CCWGG 2 cut(s) 546, 1100
MvnI CGCG 1 cut(s) 972
MwoI GCNNNNNNNGC 7 cut(s) 201, 557, 719, 761, 863, 1232, 1698
NarI GGCGCC 1 cut(s) 1540
NciI CCSGG 1 cut(s) 1657
NdeI CATATG 1 cut(s) 319
NlaIII CATG 5 cut(s) 580, 631, 662, 791, 904
NlaIV GGNNCC 8 cut(s) 6, 507, 566, 647, 681, 913, 1496, 1541
NmeAIII GCCGAG 1 cut(s) 1362
NmuCI GTSAC 2 cut(s) 1722, 1744
NsiI ATGCAT 1 cut(s) 1483
NspI RCATGY 2 cut(s) 631, 904
OliI CACNNNNGTG 2 cut(s) 437, 1710
PagI TCATGA 1 cut(s) 658
PciSI GCTCTTC 1 cut(s) 638
PdmI GAANNNNTTC 2 cut(s) 348, 954
PfeI GAWTC 2 cut(s) 950, 1451
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 2 cut(s) 316, 1619
PleI GAGTC 3 cut(s) 829, 1372, 1729
PluTI GGCGCC 1 cut(s) 1543
PpsI GAGTC 3 cut(s) 829, 1372, 1729
PpuMI RGGWCCY 2 cut(s) 506, 565
Psp5II RGGWCCY 2 cut(s) 506, 565
Psp6I CCWGG 2 cut(s) 544, 1098
PspGI CCWGG 2 cut(s) 544, 1098
PspN4I GGNNCC 8 cut(s) 6, 507, 566, 647, 681, 913, 1496, 1541
PspOMI GGGCCC 1 cut(s) 679
PspPI GGNCC 7 cut(s) 183, 218, 506, 565, 679, 680, 1619
PspPPI RGGWCCY 2 cut(s) 506, 565
PsuI RGATCY 3 cut(s) 911, 995, 1552
RsaI GTAC 3 cut(s) 386, 1261, 1376
RsaNI GTAC 3 cut(s) 385, 1260, 1375
RseI CAYNNNNRTG 2 cut(s) 437, 1710
SapI GCTCTTC 1 cut(s) 638
SaqAI TTAA 5 cut(s) 90, 420, 450, 929, 1247
SatI GCNGC 2 cut(s) 315, 1618
Sau96I GGNCC 7 cut(s) 183, 218, 506, 565, 679, 680, 1619
ScaI AGTACT 1 cut(s) 1376
SchI GAGTC 3 cut(s) 830, 1373, 1730
ScrFI CCNGG 3 cut(s) 546, 1100, 1657
SduI GDGCHC 1 cut(s) 683
SfaNI GCATC 5 cut(s) 204, 773, 866, 1129, 1468
SfoI GGCGCC 1 cut(s) 1541
SinI GGWCC 3 cut(s) 183, 506, 565
SmiMI CAYNNNNRTG 2 cut(s) 437, 1710
SmlI CTYRAG 3 cut(s) 199, 1049, 1519
SmoI CTYRAG 3 cut(s) 199, 1049, 1519
Sse9I AATT 7 cut(s) 96, 212, 263, 288, 1228, 1248, 1388
SsiI CCGC 2 cut(s) 1235, 1617
SspDI GGCGCC 1 cut(s) 1539
SspI AATATT 1 cut(s) 518
SspMI CTAG 4 cut(s) 557, 728, 1149, 1272
StyD4I CCNGG 3 cut(s) 544, 1098, 1655
StyI CCWWGG 3 cut(s) 568, 923, 1498
TaaI ACNGT 6 cut(s) 88, 409, 418, 436, 650, 1259
TaiI ACGT 1 cut(s) 1126
TaqI TCGA 3 cut(s) 1134, 1489, 1734
TasI AATT 7 cut(s) 96, 212, 263, 288, 1228, 1248, 1388
TatI WGTACW 2 cut(s) 1259, 1374
TauI GCSGC 1 cut(s) 1620
TfiI GAWTC 2 cut(s) 950, 1451
Tru1I TTAA 5 cut(s) 90, 420, 450, 929, 1247
Tru9I TTAA 5 cut(s) 90, 420, 450, 929, 1247
TscAI CASTG 3 cut(s) 285, 395, 439
TseFI GTSAC 2 cut(s) 1722, 1744
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 2 cut(s) 1722, 1744
TspDTI ATGAA 8 cut(s) 31, 537, 565, 647, 776, 891, 1005, 1590
TspGWI ACGGA 1 cut(s) 696
TspRI CASTG 3 cut(s) 285, 395, 439
Van91I CCANNNNNTGG 1 cut(s) 284
VpaK11BI GGWCC 3 cut(s) 183, 506, 565
XapI RAATTY 1 cut(s) 96
XceI RCATGY 2 cut(s) 631, 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 1592
XmnI GAANNNNTTC 2 cut(s) 348, 954
XspI CTAG 4 cut(s) 557, 728, 1149, 1272
ZrmI AGTACT 1 cut(s) 1376
Zsp2I ATGCAT 1 cut(s) 1483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.