Rorug02G0633000

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000149
Physical Location & Seq
Reverse (-)
74727611 .. 74730240
2630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0633000.1

Sequence Viewer

Length: 1008 bp
ATGGCCAATTTCCTGATAAACAGAACCCTAAAATCAATCCCAAACCTCAACCTAATCACCACCGCTCTATCCTCTAGTTCCCGCCAATTCACCTCCGCCGCTGCCACCGCCGCCGAGCAACCCCAATCCGACGGCGGCGAGTCTTCCCCCTCCTCCTCCTTCACCTTCTCATCCGACGGCCAAGACAGCATACACATCAAGCCCTCTTTTTCTTCCGTTTCAAAGCGCGAAACGGCGTCGTCGTCGGTGACGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGAGATTCTACAATCAAGTGACGACCAGGAAGGCCGACGACGGGAATGGGTGGTCGGTGATGCTTGATTATCGGACGCTCAAGACTCCATCAAAGAGACCCTTAAAGCTTCCGACTTTGGGTTTAGCTAAGGCCATTGCTGCTGAGTGGGAATACCAGGAAACAGATGGGATTAGGCCCTTCACGATGCCTCTCATGAAGCTTGCTTGTACTGCACTTGAAAGAGTTCCTATCACACGGCATAAGGTTATAGAATACTTGATAAATAGATTCAATCAAGATTTAGTCTTTTGTCGCGCCCCGGATGACAGTGAGCTGACAAGCGGCATCCATGAACGGCAAGTGGAAAAGATTGATCCATTACTTGATTGGCTGGAGTCCGAATTTGGCTTTAAACCTGTTGTTTACTCCAGCTTTTTTGGTGGAAAGCAGGAGGATGGACTTCTAAAAGCTATAGAAACCCTACTGAAGAAAACAGATGAGTGTGAATTGGCAGCAATTGATGCTATTGCAGGAGCAGCACACTCCCTAACAATTGCTCTTGGATTGTTTCGTGGGAAACTGCAGATTGAAGAAGCAATAGAGCTAATTAGACTTGAAGAAGATTTTCAGGTAGACAAGTGGGGTCTGGTTGAAGGTGGTCATGATGTAGATATTGCTGATCTCAAGGTACAGATCGCATCAGCTGCTGTATTCCTGGGTCTTTCAAGGAGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

335

Amino Acids

36.87

Weight (kDa)

5.54

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP12 PF07542 97 - 222 6.5e-31 ATP12 chaperone protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 903
AccII CGCG 2 cut(s) 228, 585
AciI CCGC 8 cut(s) 63, 82, 96, 99, 108, 111, 135, 612
AclWI GGATC 1 cut(s) 638
AcoI YGGCCR 2 cut(s) 3, 178
AcsI RAATTY 1 cut(s) 671
AcuI CTGAAG 1 cut(s) 776
AcyI GRCGYC 1 cut(s) 236
AfaI GTAC 2 cut(s) 499, 960
AfiI CCNNNNNNNGG 2 cut(s) 330, 407
AgsI TTSAA 7 cut(s) 222, 509, 562, 860, 887, 923, 996
AjnI CCWGG 3 cut(s) 314, 444, 984
AluBI AGCT 8 cut(s) 397, 416, 490, 604, 702, 740, 874, 974
AluI AGCT 8 cut(s) 397, 416, 490, 604, 702, 740, 874, 974
Alw26I GTCTC 1 cut(s) 379
AlwI GGATC 1 cut(s) 638
AlwNI CAGNNNCTG 1 cut(s) 977
AoxI GGCC 5 cut(s) 3, 178, 321, 420, 464
ApeKI GCWGC 5 cut(s) 101, 428, 782, 806, 974
ApoI RAATTY 1 cut(s) 671
Asp700I GAANNNNTTC 3 cut(s) 293, 513, 894
AspLEI GCGC 2 cut(s) 228, 587
AspS9I GGNCC 1 cut(s) 465
AsuC2I CCSGG 1 cut(s) 590
AsuHPI GGTGA 5 cut(s) 49, 82, 154, 259, 358
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 5 cut(s) 88, 415, 794, 818, 961
BccI CCATC 3 cut(s) 385, 449, 719
BceAI ACGGC 5 cut(s) 148, 193, 249, 542, 641
BciT130I CCWGG 3 cut(s) 316, 446, 986
BcnI CCSGG 1 cut(s) 590
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 2 cut(s) 741, 851
BisI GCNGC 9 cut(s) 99, 102, 111, 136, 429, 613, 783, 807, 975
BlsI GCNGC 9 cut(s) 100, 103, 112, 137, 430, 614, 784, 808, 976
Bme1390I CCNGG 4 cut(s) 316, 446, 590, 986
BmgT120I GGNCC 1 cut(s) 465
BmrFI CCNGG 4 cut(s) 316, 446, 590, 986
BmsI GCATC 6 cut(s) 243, 339, 465, 624, 781, 977
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 2 cut(s) 682, 683
Bpu10I CCTNAGC 1 cut(s) 417
BpuEI CTTGAG 2 cut(s) 353, 938
BpuMI CCSGG 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 588, 985
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 407
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 3 cut(s) 316, 446, 986
BseDI CCNNGG 2 cut(s) 588, 985
BseGI GGATG 4 cut(s) 170, 598, 615, 730
BseLI CCNNNNNNNGG 2 cut(s) 330, 407
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 423
BseRI GAGGAG 2 cut(s) 142, 145
BseXI GCAGC 5 cut(s) 88, 415, 794, 818, 961
BsgI GTGCAG 1 cut(s) 486
Bsh1236I CGCG 2 cut(s) 228, 585
BshFI GGCC 5 cut(s) 5, 180, 323, 422, 466
BsiSI CCGG 1 cut(s) 590
BslI CCNNNNNNNGG 2 cut(s) 330, 407
BsmAI GTCTC 1 cut(s) 379
BsnI GGCC 5 cut(s) 5, 180, 323, 422, 466
Bso31I GGTCTC 1 cut(s) 379
Bsp143I GATC 3 cut(s) 643, 949, 963
BspACI CCGC 8 cut(s) 63, 82, 96, 99, 108, 111, 135, 612
BspANI GGCC 5 cut(s) 5, 180, 323, 422, 466
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 2 cut(s) 228, 585
BspHI TCATGA 3 cut(s) 267, 483, 931
BspMAI CTGCAG 1 cut(s) 855
BspPI GGATC 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 379
BsrBI CCGCTC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 423
BssECI CCNNGG 2 cut(s) 588, 985
BssMI GATC 3 cut(s) 643, 949, 963
BssNI GRCGYC 1 cut(s) 236
Bst2UI CCWGG 3 cut(s) 316, 446, 986
Bst4CI ACNGT 1 cut(s) 599
Bst6I CTCTTC 1 cut(s) 284
BstACI GRCGYC 1 cut(s) 236
BstAPI GCANNNNNTGC 2 cut(s) 791, 974
BstC8I GCNNGC 1 cut(s) 492
BstDEI CTNAG 2 cut(s) 417, 432
BstF5I GGATG 4 cut(s) 170, 598, 615, 730
BstFNI CGCG 2 cut(s) 228, 585
BstHHI GCGC 2 cut(s) 228, 587
BstKTI GATC 3 cut(s) 646, 952, 966
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 3 cut(s) 643, 949, 963
BstMWI GCNNNNNNNGC 8 cut(s) 107, 110, 186, 428, 500, 791, 806, 974
BstNI CCWGG 3 cut(s) 316, 446, 986
BstSCI CCNGG 4 cut(s) 314, 444, 588, 984
BstSFI CTRYAG 2 cut(s) 741, 851
BstUI CGCG 2 cut(s) 228, 585
BstV1I GCAGC 5 cut(s) 88, 415, 794, 818, 961
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 5 cut(s) 5, 180, 323, 422, 466
BtsCI GGATG 4 cut(s) 170, 598, 615, 730
BtsIMutI CAGTG 1 cut(s) 604
Cac8I GCNNGC 1 cut(s) 492
CaiI CAGNNNCTG 1 cut(s) 977
CciI TCATGA 3 cut(s) 267, 483, 931
CfoI GCGC 2 cut(s) 228, 587
Cfr13I GGNCC 1 cut(s) 465
CseI GACGC 2 cut(s) 225, 373
Csp6I GTAC 2 cut(s) 498, 959
CviAII CATG 4 cut(s) 268, 484, 620, 932
CviQI GTAC 2 cut(s) 498, 959
DdeI CTNAG 2 cut(s) 417, 432
DpnI GATC 3 cut(s) 645, 951, 965
DpnII GATC 3 cut(s) 643, 949, 963
DraI TTTAAA 1 cut(s) 682
EaeI YGGCCR 2 cut(s) 3, 178
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
EciI GGCGGA 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 776
EcoO109I RGGNCCY 1 cut(s) 465
EcoRII CCWGG 3 cut(s) 314, 444, 984
FaeI CATG 4 cut(s) 271, 487, 623, 935
FaiI YATR 8 cut(s) 191, 269, 485, 531, 539, 621, 743, 933
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FatI CATG 4 cut(s) 267, 483, 619, 931
FauI CCCGC 1 cut(s) 89
FblI GTMKAC 1 cut(s) 903
Fnu4HI GCNGC 9 cut(s) 99, 102, 111, 136, 429, 613, 783, 807, 975
FokI GGATG 4 cut(s) 157, 602, 605, 737
Fsp4HI GCNGC 9 cut(s) 99, 102, 111, 136, 429, 613, 783, 807, 975
FspBI CTAG 1 cut(s) 75
GlaI GCGC 2 cut(s) 227, 586
GluI GCNGC 9 cut(s) 99, 102, 111, 136, 429, 613, 783, 807, 975
GsuI CTGGAG 2 cut(s) 682, 683
HaeIII GGCC 5 cut(s) 5, 180, 323, 422, 466
HapII CCGG 1 cut(s) 590
HgaI GACGC 2 cut(s) 225, 373
HhaI GCGC 2 cut(s) 228, 587
Hin1I GRCGYC 1 cut(s) 236
Hin1II CATG 4 cut(s) 271, 487, 623, 935
Hin6I GCGC 2 cut(s) 226, 585
HinP1I GCGC 2 cut(s) 226, 585
HindIII AAGCTT 2 cut(s) 395, 488
HinfI GANTC 5 cut(s) 140, 294, 373, 558, 665
HpaII CCGG 1 cut(s) 590
HphI GGTGA 5 cut(s) 49, 82, 154, 259, 358
Hpy166II GTNNAC 2 cut(s) 694, 904
Hpy188I TCNGA 5 cut(s) 130, 175, 363, 402, 670
Hpy188III TCNNGA 7 cut(s) 13, 268, 370, 472, 484, 566, 932
Hpy8I GTNNAC 2 cut(s) 694, 904
Hpy99I CGWCG 7 cut(s) 134, 179, 241, 244, 247, 329, 332
HpyAV CCTTC 5 cut(s) 169, 175, 313, 478, 917
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4V TGCA 3 cut(s) 503, 800, 853
HpyF10VI GCNNNNNNNGC 8 cut(s) 107, 110, 186, 428, 500, 791, 806, 974
HpyF3I CTNAG 2 cut(s) 417, 432
Hsp92I GRCGYC 1 cut(s) 236
Hsp92II CATG 4 cut(s) 271, 487, 623, 935
HspAI GCGC 2 cut(s) 226, 585
Kzo9I GATC 3 cut(s) 643, 949, 963
LmnI GCTCC 1 cut(s) 803
Lsp1109I GCAGC 5 cut(s) 88, 415, 794, 818, 961
LweI GCATC 6 cut(s) 243, 339, 465, 624, 781, 977
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 247, 307
MalI GATC 3 cut(s) 645, 951, 965
MbiI CCGCTC 1 cut(s) 65
MboI GATC 3 cut(s) 643, 949, 963
MboII GAAGA 7 cut(s) 135, 204, 301, 769, 872, 899, 902
MfeI CAATTG 2 cut(s) 786, 822
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 7, 86, 671, 776, 786, 822, 876
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 149, 367, 674
MmeI TCCRAC 3 cut(s) 153, 198, 425
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 3 cut(s) 293, 513, 894
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 392, 681, 1006
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 101, 974
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 4 cut(s) 316, 446, 590, 986
MunI CAATTG 2 cut(s) 786, 822
MvaI CCWGG 3 cut(s) 316, 446, 986
MvnI CGCG 2 cut(s) 228, 585
MwoI GCNNNNNNNGC 8 cut(s) 107, 110, 186, 428, 500, 791, 806, 974
NciI CCSGG 1 cut(s) 590
NdeII GATC 3 cut(s) 643, 949, 963
NlaIII CATG 4 cut(s) 271, 487, 623, 935
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 2 cut(s) 247, 307
PagI TCATGA 3 cut(s) 267, 483, 931
PcsI WCGNNNNNNNCGW 2 cut(s) 239, 248
PdmI GAANNNNTTC 3 cut(s) 293, 513, 894
PfeI GAWTC 2 cut(s) 294, 558
PflFI GACNNNGTC 1 cut(s) 274
PkrI GCNGC 9 cut(s) 100, 103, 112, 137, 430, 614, 784, 808, 976
PleI GAGTC 3 cut(s) 148, 367, 673
PpsI GAGTC 3 cut(s) 148, 367, 673
Psp6I CCWGG 3 cut(s) 314, 444, 984
PspGI CCWGG 3 cut(s) 314, 444, 984
PspPI GGNCC 1 cut(s) 465
PstI CTGCAG 1 cut(s) 855
PstNI CAGNNNCTG 1 cut(s) 977
PsyI GACNNNGTC 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 2 cut(s) 499, 960
RsaNI GTAC 2 cut(s) 498, 959
SaqAI TTAA 3 cut(s) 392, 681, 1006
SatI GCNGC 9 cut(s) 99, 102, 111, 136, 429, 613, 783, 807, 975
Sau3AI GATC 3 cut(s) 643, 949, 963
Sau96I GGNCC 1 cut(s) 465
SchI GAGTC 3 cut(s) 149, 367, 674
ScrFI CCNGG 4 cut(s) 316, 446, 590, 986
SfaNI GCATC 6 cut(s) 243, 339, 465, 624, 781, 977
SfcI CTRYAG 2 cut(s) 741, 851
SmlI CTYRAG 2 cut(s) 368, 953
SmoI CTYRAG 2 cut(s) 368, 953
Sse9I AATT 7 cut(s) 7, 86, 671, 776, 786, 822, 876
SsiI CCGC 8 cut(s) 63, 82, 96, 99, 108, 111, 135, 612
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 4 cut(s) 314, 444, 588, 984
TaaI ACNGT 1 cut(s) 599
TasI AATT 7 cut(s) 7, 86, 671, 776, 786, 822, 876
TatI WGTACW 1 cut(s) 497
TauI GCSGC 4 cut(s) 101, 113, 138, 615
TfiI GAWTC 2 cut(s) 294, 558
Tru1I TTAA 3 cut(s) 392, 681, 1006
Tru9I TTAA 3 cut(s) 392, 681, 1006
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 2 cut(s) 247, 307
TseI GCWGC 5 cut(s) 101, 428, 782, 806, 974
Tsp45I GTSAC 2 cut(s) 247, 307
TspDTI ATGAA 3 cut(s) 256, 500, 636
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 1 cut(s) 604
Tth111I GACNNNGTC 1 cut(s) 274
XapI RAATTY 1 cut(s) 671
XcmI CCANNNNNNNNNTGG 2 cut(s) 452, 654
XmiI GTMKAC 1 cut(s) 903
XmnI GAANNNNTTC 3 cut(s) 293, 513, 894
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.