Rh3CG034200

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000149
Physical Location & Seq
Forward (+)
2351270 .. 2353385
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG034200.1

Sequence Viewer

Length: 708 bp
ATGCCGAGCCATGACGCCTTCAGCACCATCTTCTCCGAGATCGGTGCCGGCAAGCATGTCCCAGGCGTAATCTTCGCCGAACTCGAGCCCACCATCTTCTTCTCCGAGATCGGTGCCGGCAAGCATATCCCAGGCGTAATCTTCGCCGACCTCGAGCCCATCGTCCCAGTCGCTGTTGCTCGTGCTGGAAGCTCTCGGAGGCGCTGGTCCCGATGTGGGAATTCGGGTCGGATAGGAACGTCGGCGTCCACCCCAGACTTGGAACTTGGAATCGGGATAGTGCCATATAGCCCTCTTGGTCAAGGATTTTTCGGTGGCAGGGCAGTTGTGGAAGCTATACCTGCAAAGAGTCATTTGGACTGGCTTCCTCGCTTTCAAGGGGAGAACTTGGAGAAAAACAAAGACCTTTATGCTGAAACACAGAGGTTGGCTGAAAAGCATGGATGTTCCCCTGCACAACTCGCGCTTTCTTGGGTTCTTACTCAAGGCGAAGATGTTGTACCTATCCCTGGGACTACTAAGATAAAGAATTTGGATGATAATATTGGTTCCTTGAGAGTGAAACTCACTAAAGAAGATATAGAAGAGATTTCTGATAAAATATCTATCAACAGAGTGCCTGGGAATAATGCACCCGATGCTTTTTTTCGCTGCTCATGGAAGTTTGCAAATACACCACCAGCAAAAGATGGCAAAATACCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

235

Amino Acids

25.34

Weight (kDa)

6.53

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 89 - 200 3.9e-21 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 349
AccB1I GGYRCC 2 cut(s) 44, 113
AccII CGCG 1 cut(s) 464
AcsI RAATTY 2 cut(s) 220, 529
AcuI CTGAAG 1 cut(s) 4
AcyI GRCGYC 2 cut(s) 15, 245
AfaI GTAC 1 cut(s) 501
AfiI CCNNNNNNNGG 3 cut(s) 216, 259, 509
AgsI TTSAA 1 cut(s) 377
AjnI CCWGG 4 cut(s) 61, 130, 508, 619
AluBI AGCT 2 cut(s) 192, 335
AluI AGCT 2 cut(s) 192, 335
AlwNI CAGNNNCTG 1 cut(s) 173
Ama87I CYCGRG 2 cut(s) 83, 152
ApeKI GCWGC 1 cut(s) 651
ApoI RAATTY 2 cut(s) 220, 529
AspLEI GCGC 2 cut(s) 204, 466
AspS9I GGNCC 1 cut(s) 207
AvaI CYCGRG 2 cut(s) 83, 152
AvaII GGWCC 1 cut(s) 207
BanI GGYRCC 2 cut(s) 44, 113
BanII GRGCYC 2 cut(s) 90, 159
BarI GAAGNNNNNNTAC 2 cut(s) 483, 515
BauI CACGAG 1 cut(s) 180
BbvI GCAGC 1 cut(s) 638
BccI CCATC 4 cut(s) 35, 101, 167, 683
BcgI CGANNNNNNTGC 4 cut(s) 26, 60, 95, 129
BciT130I CCWGG 4 cut(s) 63, 132, 510, 621
BfoI RGCGCY 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 349
BisI GCNGC 1 cut(s) 652
BlsI GCNGC 1 cut(s) 653
Bme1390I CCNGG 4 cut(s) 63, 132, 510, 621
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 2 cut(s) 83, 152
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 4 cut(s) 46, 115, 209, 550
BmrFI CCNGG 4 cut(s) 63, 132, 510, 621
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 628
BmuI ACTGGG 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 549, 581
BpuEI CTTGAG 2 cut(s) 468, 574
BsaHI GRCGYC 2 cut(s) 15, 245
BsaJI CCNNGG 5 cut(s) 61, 130, 508, 509, 620
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 259, 509
Bse118I RCCGGY 2 cut(s) 47, 116
Bse1I ACTGG 2 cut(s) 167, 365
BseBI CCWGG 4 cut(s) 63, 132, 510, 621
BseDI CCNNGG 5 cut(s) 61, 130, 508, 509, 620
BseGI GGATG 2 cut(s) 449, 541
BseLI CCNNNNNNNGG 3 cut(s) 216, 259, 509
BseNI ACTGG 2 cut(s) 167, 365
BseXI GCAGC 1 cut(s) 638
BsgI GTGCAG 1 cut(s) 438
Bsh1236I CGCG 1 cut(s) 464
BshNI GGYRCC 2 cut(s) 44, 113
BsiHKCI CYCGRG 2 cut(s) 83, 152
BsiSI CCGG 2 cut(s) 48, 117
BslFI GGGAC 4 cut(s) 44, 149, 193, 526
BslI CCNNNNNNNGG 3 cut(s) 216, 259, 509
BsmFI GGGAC 4 cut(s) 44, 149, 193, 526
BsoBI CYCGRG 2 cut(s) 83, 152
Bsp1286I GDGCHC 2 cut(s) 90, 159
Bsp143I GATC 2 cut(s) 39, 108
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 4 cut(s) 46, 115, 209, 550
BspMI ACCTGC 1 cut(s) 349
BspT107I GGYRCC 2 cut(s) 44, 113
BsrFI RCCGGY 2 cut(s) 47, 116
BsrI ACTGG 2 cut(s) 167, 365
BssAI RCCGGY 2 cut(s) 47, 116
BssECI CCNNGG 5 cut(s) 61, 130, 508, 509, 620
BssMI GATC 2 cut(s) 39, 108
BssNI GRCGYC 2 cut(s) 15, 245
BssSI CACGAG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 180
Bst2UI CCWGG 4 cut(s) 63, 132, 510, 621
Bst6I CTCTTC 1 cut(s) 579
BstACI GRCGYC 2 cut(s) 15, 245
BstAPI GCANNNNNTGC 1 cut(s) 638
BstC8I GCNNGC 4 cut(s) 49, 53, 118, 122
BstDEI CTNAG 1 cut(s) 519
BstF5I GGATG 2 cut(s) 449, 541
BstFNI CGCG 1 cut(s) 464
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 2 cut(s) 204, 466
BstKTI GATC 2 cut(s) 42, 111
BstMBI GATC 2 cut(s) 39, 108
BstMWI GCNNNNNNNGC 3 cut(s) 341, 461, 638
BstNI CCWGG 4 cut(s) 63, 132, 510, 621
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 4 cut(s) 61, 130, 508, 619
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 638
BtsCI GGATG 2 cut(s) 449, 541
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 4 cut(s) 49, 53, 118, 122
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 2 cut(s) 204, 466
Cfr10I RCCGGY 2 cut(s) 47, 116
Cfr13I GGNCC 1 cut(s) 207
CseI GACGC 2 cut(s) 23, 234
Csp6I GTAC 1 cut(s) 500
CviAII CATG 4 cut(s) 11, 56, 440, 657
CviJI RGCY 8 cut(s) 9, 88, 157, 192, 291, 335, 364, 431
CviKI_1 RGCY 8 cut(s) 9, 88, 157, 192, 291, 335, 364, 431
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 1 cut(s) 519
DpnI GATC 2 cut(s) 41, 110
DpnII GATC 2 cut(s) 39, 108
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
Eco24I GRGCYC 2 cut(s) 90, 159
Eco47I GGWCC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 4
Eco88I CYCGRG 2 cut(s) 83, 152
EcoRI GAATTC 1 cut(s) 220
EcoRII CCWGG 4 cut(s) 61, 130, 508, 619
EcoT38I GRGCYC 2 cut(s) 90, 159
FaeI CATG 4 cut(s) 14, 59, 443, 660
FaqI GGGAC 4 cut(s) 44, 149, 193, 526
FatI CATG 4 cut(s) 10, 55, 439, 656
Fnu4HI GCNGC 1 cut(s) 652
FokI GGATG 2 cut(s) 456, 548
FriOI GRGCYC 2 cut(s) 90, 159
Fsp4HI GCNGC 1 cut(s) 652
GlaI GCGC 2 cut(s) 203, 465
GluI GCNGC 1 cut(s) 652
HaeII RGCGCY 1 cut(s) 205
HapII CCGG 2 cut(s) 48, 117
HgaI GACGC 2 cut(s) 23, 234
HhaI GCGC 2 cut(s) 204, 466
Hin1I GRCGYC 2 cut(s) 15, 245
Hin1II CATG 4 cut(s) 14, 59, 443, 660
Hin6I GCGC 2 cut(s) 202, 464
HinP1I GCGC 2 cut(s) 202, 464
HinfI GANTC 2 cut(s) 270, 349
HpaII CCGG 2 cut(s) 48, 117
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 5 cut(s) 37, 106, 198, 231, 595
Hpy188III TCNNGA 2 cut(s) 210, 274
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 4 cut(s) 344, 455, 632, 668
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 461, 638
HpyF3I CTNAG 1 cut(s) 519
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 2 cut(s) 15, 245
Hsp92II CATG 4 cut(s) 14, 59, 443, 660
HspAI GCGC 2 cut(s) 202, 464
KroI GCCGGC 2 cut(s) 47, 116
KroNI GCCGGC 2 cut(s) 49, 118
Kzo9I GATC 2 cut(s) 39, 108
Lsp1109I GCAGC 1 cut(s) 638
LweI GCATC 1 cut(s) 628
MaeII ACGT 1 cut(s) 239
MalI GATC 2 cut(s) 41, 110
MboI GATC 2 cut(s) 39, 108
MboII GAAGA 8 cut(s) 22, 64, 88, 91, 133, 503, 587, 596
MhlI GDGCHC 2 cut(s) 90, 159
MluCI AATT 2 cut(s) 220, 529
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 5 cut(s) 161, 192, 303, 378, 417
MroNI GCCGGC 2 cut(s) 47, 116
MseI TTAA 1 cut(s) 706
MspI CCGG 2 cut(s) 48, 117
MspR9I CCNGG 4 cut(s) 63, 132, 510, 621
MvaI CCWGG 4 cut(s) 63, 132, 510, 621
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 3 cut(s) 341, 461, 638
NaeI GCCGGC 2 cut(s) 49, 118
NdeII GATC 2 cut(s) 39, 108
NgoMIV GCCGGC 2 cut(s) 47, 116
NlaIII CATG 4 cut(s) 14, 59, 443, 660
NlaIV GGNNCC 4 cut(s) 46, 115, 209, 550
NmeAIII GCCGAG 1 cut(s) 30
NspI RCATGY 1 cut(s) 59
PaeR7I CTCGAG 2 cut(s) 83, 152
PasI CCCWGGG 1 cut(s) 509
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 150, 159
PdiI GCCGGC 2 cut(s) 49, 118
PfeI GAWTC 1 cut(s) 270
PkrI GCNGC 1 cut(s) 653
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
Psp6I CCWGG 4 cut(s) 61, 130, 508, 619
PspGI CCWGG 4 cut(s) 61, 130, 508, 619
PspN4I GGNNCC 4 cut(s) 46, 115, 209, 550
PspPI GGNCC 1 cut(s) 207
PspXI VCTCGAGB 2 cut(s) 83, 152
PstNI CAGNNNCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
SaqAI TTAA 1 cut(s) 706
SatI GCNGC 1 cut(s) 652
Sau3AI GATC 2 cut(s) 39, 108
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 4 cut(s) 63, 132, 510, 621
SduI GDGCHC 2 cut(s) 90, 159
SetI ASST 9 cut(s) 153, 194, 242, 337, 343, 408, 428, 505, 703
SfaNI GCATC 1 cut(s) 628
Sfr274I CTCGAG 2 cut(s) 83, 152
SinI GGWCC 1 cut(s) 207
SlaI CTCGAG 2 cut(s) 83, 152
SmlI CTYRAG 4 cut(s) 83, 152, 483, 553
SmoI CTYRAG 4 cut(s) 83, 152, 483, 553
Sse9I AATT 2 cut(s) 220, 529
SspI AATATT 1 cut(s) 544
StyD4I CCNGG 4 cut(s) 61, 130, 508, 619
TaiI ACGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 84, 153
TasI AATT 2 cut(s) 220, 529
TfiI GAWTC 1 cut(s) 270
Tru1I TTAA 1 cut(s) 706
Tru9I TTAA 1 cut(s) 706
TseI GCWGC 1 cut(s) 651
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 2 cut(s) 220, 529
XceI RCATGY 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XhoI CTCGAG 2 cut(s) 83, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.