Rroxscaffold_6G00428680

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000149
Physical Location & Seq
Forward (+)
49051182 .. 49052190
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428680.1

Sequence Viewer

Length: 462 bp
ATGGTAGATGGAGGAACTAAAGAAGTTGGTGAAGGAGGGAAGATAAAGTACGTCGGATTATCCGAAGCCAGCCCTGAAACAATAAAGAGGGCACATGCAGTTCATCCCATTACAGCTGTACAAATGGAGTGGTCTCTTTGGACTCGCGACATTGAGGACGAAATCGTCCCACTTTGCAGGTTGGCTGAAAAGCATGGATGTTCCCCTGCACAACTCGCGCTTTCTTGGGTTCTTACTCAAGGCGAAGATGTTGTACCTATCCCTGGGACTACTAAGATAAAGAATTTGGATGATAATATTGGTTCCTTGAGAGTGAAACTTACTAAAGAAGATATAAAAGAGATTTCTGATAAAATATCTATCAACTCGGTGGCTGGGAATAATGCACCCGATGCTTTTTTTCGCTGCTCATGGAAGTTTGCAAATACACCACCAGCAAAAGATGGCAAAATACCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

153

Amino Acids

16.64

Weight (kDa)

5.93

Isoelectric Point (pI)

27.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 11 - 60 8.1e-09 Aldo/keto reductase family
Aldo_ket_red PF00248 58 - 118 2e-13 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 168
AccII CGCG 2 cut(s) 147, 218
AcsI RAATTY 1 cut(s) 283
AfaI GTAC 3 cut(s) 50, 120, 255
AfiI CCNNNNNNNGG 1 cut(s) 263
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 405
ApoI RAATTY 1 cut(s) 283
AspLEI GCGC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 94
BarI GAAGNNNNNNTAC 4 cut(s) 32, 64, 237, 269
BbvI GCAGC 1 cut(s) 392
BccI CCATC 2 cut(s) 2, 437
BciT130I CCWGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 168
BisI GCNGC 1 cut(s) 406
BlsI GCNGC 1 cut(s) 407
Bme1390I CCNGG 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 382
BpuEI CTTGAG 2 cut(s) 222, 328
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 262, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 262, 263
BseGI GGATG 3 cut(s) 103, 203, 295
BseLI CCNNNNNNNGG 1 cut(s) 263
BseSI GKGCMC 1 cut(s) 94
BseXI GCAGC 1 cut(s) 392
BseYI CCCAGC 1 cut(s) 374
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 2 cut(s) 147, 218
BslFI GGGAC 2 cut(s) 152, 280
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 2 cut(s) 152, 280
Bso31I GGTCTC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 94
Bsp1407I TGTACA 1 cut(s) 118
Bsp68I TCGCGA 1 cut(s) 147
BspFNI CGCG 2 cut(s) 147, 218
BspLI GGNNCC 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 138
BsrGI TGTACA 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 262, 263
Bst2UI CCWGG 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 392
BstAUI TGTACA 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 3 cut(s) 103, 203, 295
BstFNI CGCG 2 cut(s) 147, 218
BstHHI GCGC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 215, 392
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 94
BstUI CGCG 2 cut(s) 147, 218
BstV1I GCAGC 1 cut(s) 392
BtsCI GGATG 3 cut(s) 103, 203, 295
BtuMI TCGCGA 1 cut(s) 147
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 1 cut(s) 220
Csp6I GTAC 3 cut(s) 49, 119, 254
CspCI CAANNNNNGTGG 2 cut(s) 110, 145
CviAII CATG 3 cut(s) 95, 194, 411
CviJI RGCY 5 cut(s) 68, 72, 116, 185, 374
CviKI_1 RGCY 5 cut(s) 68, 72, 116, 185, 374
CviQI GTAC 3 cut(s) 49, 119, 254
DdeI CTNAG 1 cut(s) 273
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 262
FaeI CATG 3 cut(s) 98, 197, 414
FaiI YATR 4 cut(s) 96, 195, 335, 412
FaqI GGGAC 2 cut(s) 152, 280
FatI CATG 3 cut(s) 94, 193, 410
Fnu4HI GCNGC 1 cut(s) 406
FokI GGATG 3 cut(s) 90, 210, 302
Fsp4HI GCNGC 1 cut(s) 406
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 406
GsaI CCCAGC 1 cut(s) 378
HhaI GCGC 1 cut(s) 220
Hin1II CATG 3 cut(s) 98, 197, 414
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 1 cut(s) 142
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 3 cut(s) 56, 64, 349
Hpy188III TCNNGA 1 cut(s) 146
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 5 cut(s) 98, 177, 209, 386, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 392
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 3 cut(s) 98, 197, 414
HspAI GCGC 1 cut(s) 218
LpnPI CCDG 8 cut(s) 82, 87, 163, 219, 249, 276, 360, 447
Lsp1109I GCAGC 1 cut(s) 392
LweI GCATC 1 cut(s) 382
MaeII ACGT 1 cut(s) 51
MboII GAAGA 3 cut(s) 52, 257, 341
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 1 cut(s) 283
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 4 cut(s) 5, 29, 81, 148
MseI TTAA 1 cut(s) 460
MspA1I CMGCKG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MvnI CGCG 2 cut(s) 147, 218
MwoI GCNNNNNNNGC 2 cut(s) 215, 392
NlaIII CATG 3 cut(s) 98, 197, 414
NlaIV GGNNCC 1 cut(s) 304
NruI TCGCGA 1 cut(s) 147
NspI RCATGY 1 cut(s) 98
PasI CCCWGGG 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PkrI GCNGC 1 cut(s) 407
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 374
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 116
RruI TCGCGA 1 cut(s) 147
RsaI GTAC 3 cut(s) 50, 120, 255
RsaNI GTAC 3 cut(s) 49, 119, 254
SaqAI TTAA 1 cut(s) 460
SatI GCNGC 1 cut(s) 406
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 94
SetI ASST 5 cut(s) 54, 118, 182, 259, 457
SfaNI GCATC 1 cut(s) 382
SmlI CTYRAG 2 cut(s) 237, 307
SmoI CTYRAG 2 cut(s) 237, 307
Sse9I AATT 1 cut(s) 283
SspI AATATT 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 262
TaiI ACGT 1 cut(s) 54
TasI AATT 1 cut(s) 283
TatI WGTACW 1 cut(s) 118
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TseI GCWGC 1 cut(s) 405
TspDTI ATGAA 1 cut(s) 92
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.