MD12G1239200.v1.1

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000149
Physical Location & Seq
Reverse (-)
31199945 .. 31201023
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1239200.v1.1.491

Sequence Viewer

Length: 504 bp
ATGAATTGCTTCCATAATTCCGTTTCTGTAAGGGGAAAAGAGGGAGTGCTTTTGAAGATGGTCTCGGAGCTTGGCATCGGAATAGTTCCATATAGTCCACTTGGTCGTGGTTTTTTCGGTGGCAAAGCAGTTGTTGAAAGTTTGCCTGCAAATAGTTTTGCTGCCTCACAGCCCCGGTTCATAGGAGAGAACTTAGACAAGAACAAGAACATTTACTATCGAATAGAAAGCATTGCTAAGAAGCACCAGTGCTCTACTGCTCAGATAGCACTAGCATGGGTTCTCCACCAAGGACTTGATGTCGTACCTATCCCGGGGACAACAAAGATCAAGAACCTGGATGCAAACATTGGGTCCTTGGGGGTGAAGCTGACGGAAGAAGACGCGAAAGAAGTTTCTGATGCTGTACCAATCGACCAAGTAGCTGGCGAGAGAGCTTTCGTGCTCCTCATGGCGTTGCAGTGGAAGTTCGCCAACACTCCTCCGAAAGATTCCAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

168

Amino Acids

18.09

Weight (kDa)

8.87

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 16 - 134 3.1e-20 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 386
AfaI GTAC 2 cut(s) 306, 408
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 2 cut(s) 55, 137
AhdI GACNNNNNGTC 1 cut(s) 299
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 4 cut(s) 70, 370, 425, 437
AluI AGCT 4 cut(s) 70, 370, 425, 437
Alw21I GWGCWC 2 cut(s) 254, 447
Alw26I GTCTC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 161
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 354
AsuC2I CCSGG 3 cut(s) 175, 314, 315
AsuHPI GGTGA 1 cut(s) 376
AvaI CYCGRG 1 cut(s) 313
AvaII GGWCC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 2 cut(s) 254, 447
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 3 cut(s) 175, 314, 315
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 1 cut(s) 272
BglII AGATCT 1 cut(s) 498
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 4 cut(s) 175, 314, 315, 338
Bme18I GGWCC 1 cut(s) 354
BmeRI GACNNNNNGTC 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 4 cut(s) 175, 314, 315, 338
BmsI GCATC 3 cut(s) 84, 331, 391
BpiI GAAGAC 1 cut(s) 387
BpuMI CCSGG 3 cut(s) 175, 314, 315
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 5 cut(s) 173, 289, 313, 314, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 5 cut(s) 173, 289, 313, 314, 357
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 2 cut(s) 437, 471
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 386
BsiHKAI GWGCWC 2 cut(s) 254, 447
BsiHKCI CYCGRG 1 cut(s) 313
BsiSI CCGG 2 cut(s) 175, 314
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 331
Bso31I GGTCTC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 313
Bsp1286I GDGCHC 2 cut(s) 254, 447
Bsp143I GATC 2 cut(s) 327, 498
BspCNI CTCAG 1 cut(s) 274
BspFNI CGCG 1 cut(s) 386
BspLI GGNNCC 1 cut(s) 355
BspTNI GGTCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 5 cut(s) 173, 289, 313, 314, 357
BssMI GATC 2 cut(s) 327, 498
BssT1I CCWWGG 2 cut(s) 289, 357
Bst2UI CCWGG 1 cut(s) 338
BstC8I GCNNGC 2 cut(s) 147, 427
BstDEI CTNAG 3 cut(s) 193, 237, 261
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 386
BstKTI GATC 2 cut(s) 330, 501
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 2 cut(s) 327, 498
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 4 cut(s) 173, 312, 313, 336
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 498
BstXI CCANNNNNNTGG 1 cut(s) 425
BstYI RGATCY 1 cut(s) 498
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 467
BtsIMutI CAGTG 2 cut(s) 254, 467
Cac8I GCNNGC 2 cut(s) 147, 427
Cfr13I GGNCC 1 cut(s) 354
Cfr9I CCCGGG 1 cut(s) 313
CseI GACGC 1 cut(s) 392
Csp6I GTAC 2 cut(s) 305, 407
CviAII CATG 2 cut(s) 276, 451
CviJI RGCY 5 cut(s) 70, 172, 370, 425, 437
CviKI_1 RGCY 5 cut(s) 70, 172, 370, 425, 437
CviQI GTAC 2 cut(s) 305, 407
DdeI CTNAG 3 cut(s) 193, 237, 261
DpnI GATC 2 cut(s) 329, 500
DpnII GATC 2 cut(s) 327, 498
DriI GACNNNNNGTC 1 cut(s) 299
Eam1105I GACNNNNNGTC 1 cut(s) 299
Eco130I CCWWGG 2 cut(s) 289, 357
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 354
Eco88I CYCGRG 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 2 cut(s) 289, 357
ErhI CCWWGG 2 cut(s) 289, 357
FaeI CATG 2 cut(s) 279, 454
FaiI YATR 6 cut(s) 15, 91, 93, 182, 277, 452
FaqI GGGAC 1 cut(s) 331
FatI CATG 2 cut(s) 275, 450
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 272
GluI GCNGC 1 cut(s) 162
HapII CCGG 2 cut(s) 175, 314
HgaI GACGC 1 cut(s) 392
Hin1II CATG 2 cut(s) 279, 454
HinfI GANTC 1 cut(s) 491
HpaII CCGG 2 cut(s) 175, 314
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 6 cut(s) 67, 80, 264, 400, 486, 503
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 1 cut(s) 98
HpyCH4V TGCA 3 cut(s) 149, 344, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 3 cut(s) 193, 237, 261
Hsp92II CATG 2 cut(s) 279, 454
Kzo9I GATC 2 cut(s) 327, 498
LmnI GCTCC 2 cut(s) 67, 450
LpnPI CCDG 7 cut(s) 159, 188, 260, 323, 327, 350, 411
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 3 cut(s) 84, 331, 391
MaeI CTAG 1 cut(s) 272
MalI GATC 2 cut(s) 329, 500
MboI GATC 2 cut(s) 327, 498
MboII GAAGA 3 cut(s) 67, 389, 392
MflI RGATCY 1 cut(s) 498
MhlI GDGCHC 2 cut(s) 254, 447
MluCI AATT 2 cut(s) 4, 16
MnlI CCTC 4 cut(s) 34, 175, 458, 492
MroXI GAANNNNTTC 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 274
MspI CCGG 2 cut(s) 175, 314
MspR9I CCNGG 4 cut(s) 175, 314, 315, 338
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 3 cut(s) 175, 314, 315
NdeII GATC 2 cut(s) 327, 498
NlaIII CATG 2 cut(s) 279, 454
NlaIV GGNNCC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 491
PkrI GCNGC 1 cut(s) 163
PpuMI RGGWCCY 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 354
PspPPI RGGWCCY 1 cut(s) 354
PsuI RGATCY 1 cut(s) 498
RsaI GTAC 2 cut(s) 306, 408
RsaNI GTAC 2 cut(s) 305, 407
RseI CAYNNNNRTG 1 cut(s) 274
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 2 cut(s) 327, 498
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 4 cut(s) 175, 314, 315, 338
SduI GDGCHC 2 cut(s) 254, 447
SetI ASST 6 cut(s) 72, 310, 339, 372, 427, 439
SfaNI GCATC 3 cut(s) 84, 331, 391
SinI GGWCC 1 cut(s) 354
SmaI CCCGGG 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 274
Sse9I AATT 2 cut(s) 4, 16
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 4 cut(s) 173, 312, 313, 336
StyI CCWWGG 2 cut(s) 289, 357
TaqI TCGA 2 cut(s) 220, 414
TasI AATT 2 cut(s) 4, 16
TfiI GAWTC 1 cut(s) 491
TscAI CASTG 2 cut(s) 254, 467
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 17, 169
TspGWI ACGGA 2 cut(s) 10, 389
TspMI CCCGGG 1 cut(s) 313
TspRI CASTG 2 cut(s) 254, 467
VpaK11BI GGWCC 1 cut(s) 354
XmaI CCCGGG 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.