RchiOBHm_Chr3g0451251

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000149
Physical Location & Seq
Forward (+)
2409950 .. 2418170
8221 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41853

Sequence Viewer

Length: 738 bp
ATGGTTGAGGATGAGGGAGTCCAAATTCCGAGAGTGCAACTGGGAAGTCAGGGATTTGAGGTTTCCAAGCTGGGATTAGGGTGTAGATGGCTTACTGGGAAATTCAATGAAGCTCCAGTGGCTGAAGAGCTTGCATTATCAATCATCAAGCACGCATTCGATAAAGGAATAACATTCTTTGATACAGCAGATATCTATGGACCACATACCAATGAAATTTTGATCGGAAAGGCATTGAGGCAGTTGCCTAGGGATAAAGTTCAATTGGCTACAAAGTTTGGCGTCGTAAGAATTGAGCCTGATGAACGAAGGATAATTAATGGGACTCCTGAGTATGTCCGCTCCTGCTGCGAGGCTAGCCTGAAGCGTCTTGATGTCGAGTACATTGATCTTTACTATCAGCACCGCGTAGACATATCAATCCCCATAGAGGACACTATGGGGGAATTAAAGAAGCTTGTGGAAGAAGGGAAGATAAAATATATTGGATTGTCTGAAGCTAGTCCAGAAACAATAAGGAGGGCACACGCTGTTCATCCCATTACAGCTATACAAATGGAGTGGTCTCTTTGGACTCGCGAAATTGAGGAAGAATTCGTCCCACTTTGCAGGGAACTTGGAATTGGGATAGTGCCATACCACCCCCTTGGTCGTGGGTTTTTAGCTCGAGATGGGCTACCTGAAGATCGTTTCCTGCGTTCAACTCCTCGATGTCAAGGAGAACCTCAAGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

245

Amino Acids

27.78

Weight (kDa)

5.63

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 24 - 230 1.1e-56 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 342
AccI GTMKAC 1 cut(s) 411
AccII CGCG 2 cut(s) 408, 579
AciI CCGC 2 cut(s) 340, 406
AcsI RAATTY 4 cut(s) 24, 101, 216, 593
AcuI CTGAAG 4 cut(s) 144, 383, 516, 702
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 383
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 3 cut(s) 106, 263, 702
AjuI GAANNNNNNNTTGG 2 cut(s) 606, 638
AluBI AGCT 7 cut(s) 70, 113, 130, 457, 500, 548, 665
AluI AGCT 7 cut(s) 70, 113, 130, 457, 500, 548, 665
Alw26I GTCTC 1 cut(s) 570
AlwNI CAGNNNCTG 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 666
ApeKI GCWGC 1 cut(s) 348
ApoI RAATTY 4 cut(s) 24, 101, 216, 593
AseI ATTAAT 1 cut(s) 318
AspA2I CCTAGG 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 200
AsuNHI GCTAGC 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 666
AvaII GGWCC 1 cut(s) 200
AvrII CCTAGG 1 cut(s) 248
BaeGI GKGCMC 1 cut(s) 526
BbvI GCAGC 1 cut(s) 335
BccI CCATC 2 cut(s) 81, 665
BcoDI GTCTC 1 cut(s) 570
BfaI CTAG 3 cut(s) 249, 357, 501
BisI GCNGC 1 cut(s) 349
BlnI CCTAGG 1 cut(s) 248
BlsI GCNGC 1 cut(s) 350
Bme18I GGWCC 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 666
BmgT120I GGNCC 1 cut(s) 200
BmrI ACTGGG 2 cut(s) 50, 105
BmtI GCTAGC 1 cut(s) 360
BmuI ACTGGG 2 cut(s) 50, 105
BpmI CTGGAG 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 711
BsaHI GRCGYC 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 570
BsaJI CCNNGG 2 cut(s) 248, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 3 cut(s) 45, 100, 116
BseDI CCNNGG 2 cut(s) 248, 646
BseGI GGATG 2 cut(s) 16, 535
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 3 cut(s) 45, 100, 116
BseRI GAGGAG 1 cut(s) 696
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 1 cut(s) 335
BseYI CCCAGC 1 cut(s) 70
Bsh1236I CGCG 2 cut(s) 408, 579
BsiHKCI CYCGRG 1 cut(s) 666
BslFI GGGAC 2 cut(s) 337, 584
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 1 cut(s) 570
BsmFI GGGAC 2 cut(s) 337, 584
BsmI GAATGC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 570
BsoBI CYCGRG 1 cut(s) 666
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 3 cut(s) 222, 388, 685
Bsp68I TCGCGA 1 cut(s) 579
BspACI CCGC 2 cut(s) 340, 406
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 2 cut(s) 408, 579
BspOI GCTAGC 1 cut(s) 360
BspQI GCTCTTC 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 570
BsrBI CCGCTC 1 cut(s) 342
BsrI ACTGG 3 cut(s) 45, 100, 116
BssECI CCNNGG 2 cut(s) 248, 646
BssMI GATC 3 cut(s) 222, 388, 685
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 248, 646
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 282
BstC8I GCNNGC 3 cut(s) 132, 153, 358
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 16, 535
BstFNI CGCG 2 cut(s) 408, 579
BstKTI GATC 3 cut(s) 225, 391, 688
BstMAI GTCTC 1 cut(s) 570
BstMBI GATC 3 cut(s) 222, 388, 685
BstMWI GCNNNNNNNGC 3 cut(s) 119, 348, 357
BstSLI GKGCMC 1 cut(s) 526
BstUI CGCG 2 cut(s) 408, 579
BstV1I GCAGC 1 cut(s) 335
BstXI CCANNNNNNTGG 1 cut(s) 647
BtsCI GGATG 2 cut(s) 16, 535
BtsIMutI CAGTG 1 cut(s) 123
BtuMI TCGCGA 1 cut(s) 579
Cac8I GCNNGC 3 cut(s) 132, 153, 358
CaiI CAGNNNCTG 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 2 cut(s) 271, 356
Csp6I GTAC 1 cut(s) 382
CspCI CAANNNNNGTGG 2 cut(s) 542, 577
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 1 cut(s) 330
DpnI GATC 3 cut(s) 224, 390, 687
DpnII GATC 3 cut(s) 222, 388, 685
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 248, 646
Eco31I GGTCTC 1 cut(s) 570
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 4 cut(s) 144, 383, 516, 702
Eco88I CYCGRG 1 cut(s) 666
EcoRI GAATTC 1 cut(s) 593
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 248, 646
ErhI CCWWGG 2 cut(s) 248, 646
FaiI YATR 9 cut(s) 198, 207, 336, 416, 428, 440, 483, 551, 637
FaqI GGGAC 2 cut(s) 337, 584
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 1 cut(s) 349
FokI GGATG 2 cut(s) 23, 522
Fsp4HI GCNGC 1 cut(s) 349
FspBI CTAG 3 cut(s) 249, 357, 501
GluI GCNGC 1 cut(s) 349
GsaI CCCAGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 99
HgaI GACGC 2 cut(s) 271, 356
Hin1I GRCGYC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 18, 325, 574
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 3 cut(s) 30, 227, 496
Hpy188III TCNNGA 5 cut(s) 329, 371, 506, 578, 668
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 303, 461
HpyCH4V TGCA 3 cut(s) 37, 134, 609
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 348, 357
HpyF3I CTNAG 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 282
Kzo9I GATC 3 cut(s) 222, 388, 685
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 118, 347
Lsp1109I GCAGC 1 cut(s) 335
MaeI CTAG 3 cut(s) 249, 357, 501
MalI GATC 3 cut(s) 224, 390, 687
MbiI CCGCTC 1 cut(s) 342
MboI GATC 3 cut(s) 222, 388, 685
MboII GAAGA 5 cut(s) 137, 476, 484, 602, 695
MfeI CAATTG 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 526
MlyI GAGTC 3 cut(s) 27, 319, 568
MnlI CCTC 9 cut(s) 7, 52, 231, 346, 424, 513, 580, 717, 735
MseI TTAA 2 cut(s) 318, 449
MslI CAYNNNNRTG 1 cut(s) 210
MunI CAATTG 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 155
MvnI CGCG 2 cut(s) 408, 579
MwoI GCNNNNNNNGC 3 cut(s) 119, 348, 357
NdeII GATC 3 cut(s) 222, 388, 685
NheI GCTAGC 1 cut(s) 356
NruI TCGCGA 1 cut(s) 579
PaeR7I CTCGAG 1 cut(s) 666
PciSI GCTCTTC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 694
PctI GAATGC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 350
PleI GAGTC 3 cut(s) 26, 319, 568
PpsI GAGTC 3 cut(s) 26, 319, 568
PshBI ATTAAT 1 cut(s) 318
PspFI CCCAGC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 122
RruI TCGCGA 1 cut(s) 579
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
RseI CAYNNNNRTG 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 318, 449
SatI GCNGC 1 cut(s) 349
Sau3AI GATC 3 cut(s) 222, 388, 685
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 3 cut(s) 27, 319, 568
SduI GDGCHC 1 cut(s) 526
Sfr274I CTCGAG 1 cut(s) 666
SinI GGWCC 1 cut(s) 200
SlaI CTCGAG 1 cut(s) 666
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 2 cut(s) 666, 726
SmoI CTYRAG 2 cut(s) 666, 726
SsiI CCGC 2 cut(s) 340, 406
SspMI CTAG 3 cut(s) 249, 357, 501
StyI CCWWGG 2 cut(s) 248, 646
TaqI TCGA 4 cut(s) 159, 378, 667, 709
TatI WGTACW 1 cut(s) 381
Tru1I TTAA 2 cut(s) 318, 449
Tru9I TTAA 2 cut(s) 318, 449
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 348
TspDTI ATGAA 4 cut(s) 123, 228, 318, 524
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 200
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 4 cut(s) 24, 101, 216, 593
XhoI CTCGAG 1 cut(s) 666
XmaJI CCTAGG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 411
XspI CTAG 3 cut(s) 249, 357, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.