Rroxscaffold_163G00450840

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000163
OG0000149
Physical Location & Seq
Reverse (-)
15778 .. 17311
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_163G00450840.1

Sequence Viewer

Length: 609 bp
ATGGCTGAGCTTAAGAACCTTGTGGAAGAAGGAAAGATCAAGTACATTGGGTTATCCGAAGCCAGTCCAGACACAATAAGGAGAGCACATGCAGTTCATCCCATCACAGCTATACAAATGGAGTGGTCACTTTGGACTCGTGATATTGAAGAAGAGATTATTCCACTTTGCAGGGAGCGTGGCATTGGAATACTTCCATATAGTCCTCTGGGTCGTGGTTTTTTCGCAGGCAAAGCAGTTGATGAAAGTTTGGATCCAAATGTTCTTGCGGCCGCACATCCTCGGCTCACTGGAGAGAACTTGGAGAAGAACAGAAACATATACCATGCAATAGAACGCCTTGCTACAAAGCACGATTGCTATCCTGCTCAACTAGCATTGTCGTGGGTTCTCCACCAAGGCGATGACGTTGTACCAATCCACGGGACAACAAAGATTAAGAACTTGGATACCAACATTGGCTCCTTATGTCTGAATCTCAAGGAAGACGACCTCAAAAAAATCTCTGATGCTGTTCCACTCGACCAAGTAGCTGGTGATAAGAGTTTTGAAAGCACGAGTCATGTGCAATGGAAATTCGCCAACACCCCTCAAAAGACTCTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

202

Amino Acids

22.54

Weight (kDa)

5.9

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 1 - 170 1.7e-36 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 269, 273
AclWI GGATC 2 cut(s) 248, 261
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 575
AfaI GTAC 2 cut(s) 44, 414
AfiI CCNNNNNNNGG 1 cut(s) 422
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 149, 551
AluBI AGCT 3 cut(s) 10, 110, 533
AluI AGCT 3 cut(s) 10, 110, 533
Alw21I GWGCWC 1 cut(s) 88
AlwI GGATC 2 cut(s) 248, 261
AoxI GGCC 1 cut(s) 270
ApoI RAATTY 1 cut(s) 575
AsuHPI GGTGA 1 cut(s) 548
BamHI GGATCC 1 cut(s) 253
BauI CACGAG 2 cut(s) 138, 556
BbsI GAAGAC 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 88
BccI CCATC 1 cut(s) 110
BcgI CGANNNNNNTGC 2 cut(s) 547, 581
BciVI GTATCC 1 cut(s) 442
BfaI CTAG 1 cut(s) 374
BfrI CTTAAG 1 cut(s) 11
BfuI GTATCC 1 cut(s) 442
BisI GCNGC 2 cut(s) 270, 273
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 2 cut(s) 271, 274
BmiI GGNNCC 2 cut(s) 255, 463
BmsI GCATC 1 cut(s) 499
BpiI GAAGAC 1 cut(s) 492
BpmI CTGGAG 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 464
BsaBI GATNNNNATC 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 281, 397, 421
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse1I ACTGG 2 cut(s) 63, 295
Bse3DI GCAATG 1 cut(s) 575
Bse8I GATNNNNATC 1 cut(s) 360
BseDI CCNNGG 3 cut(s) 281, 397, 421
BseGI GGATG 2 cut(s) 97, 277
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMI GCAATG 1 cut(s) 575
BseNI ACTGG 2 cut(s) 63, 295
BseX3I CGGCCG 1 cut(s) 270
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 272
BsiEI CGRYCG 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 88
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 2 cut(s) 36, 253
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 2 cut(s) 269, 273
BspANI GGCC 1 cut(s) 272
BspLI GGNNCC 2 cut(s) 255, 463
BspPI GGATC 2 cut(s) 248, 261
BspTI CTTAAG 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 575
BsrI ACTGG 2 cut(s) 63, 295
BssECI CCNNGG 3 cut(s) 281, 397, 421
BssMI GATC 2 cut(s) 36, 253
BssSI CACGAG 2 cut(s) 138, 556
BssT1I CCWWGG 1 cut(s) 397
Bst2BI CACGAG 2 cut(s) 138, 556
Bst6I CTCTTC 1 cut(s) 147
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 421
BstF5I GGATG 2 cut(s) 97, 277
BstKTI GATC 2 cut(s) 39, 256
BstMBI GATC 2 cut(s) 36, 253
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 2 cut(s) 233, 374
BstNSI RCATGY 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 492
BstX2I RGATCY 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 1 cut(s) 253
BstZI CGGCCG 1 cut(s) 270
BsuI GTATCC 1 cut(s) 442
BsuRI GGCC 1 cut(s) 272
BtgI CCRYGG 1 cut(s) 421
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 2 cut(s) 97, 277
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 229
CciNI GCGGCCGC 1 cut(s) 270
Csp6I GTAC 2 cut(s) 43, 413
CspCI CAANNNNNGTGG 2 cut(s) 104, 139
CviAII CATG 3 cut(s) 89, 326, 563
CviJI RGCY 8 cut(s) 5, 10, 62, 110, 272, 286, 462, 533
CviKI_1 RGCY 8 cut(s) 5, 10, 62, 110, 272, 286, 462, 533
CviQI GTAC 2 cut(s) 43, 413
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 38, 255
DpnII GATC 2 cut(s) 36, 253
EaeI YGGCCR 1 cut(s) 270
EagI CGGCCG 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EclXI CGGCCG 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 397
Eco52I CGGCCG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 3 cut(s) 92, 329, 566
FaiI YATR 9 cut(s) 90, 113, 199, 201, 320, 322, 327, 469, 564
FaqI GGGAC 1 cut(s) 439
FatI CATG 3 cut(s) 88, 325, 562
Fnu4HI GCNGC 2 cut(s) 270, 273
FokI GGATG 2 cut(s) 84, 264
Fsp4HI GCNGC 2 cut(s) 270, 273
FspBI CTAG 1 cut(s) 374
GluI GCNGC 2 cut(s) 270, 273
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 272
Hin1II CATG 3 cut(s) 92, 329, 566
HinfI GANTC 4 cut(s) 136, 475, 559, 598
HphI GGTGA 1 cut(s) 548
Hpy188I TCNGA 4 cut(s) 58, 474, 508, 603
Hpy188III TCNNGA 2 cut(s) 68, 140
HpyAV CCTTC 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 4 cut(s) 92, 171, 329, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 374
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 3 cut(s) 92, 329, 566
Kzo9I GATC 2 cut(s) 36, 253
LmnI GCTCC 2 cut(s) 175, 467
LpnPI CCDG 8 cut(s) 76, 81, 157, 194, 213, 276, 378, 519
LweI GCATC 1 cut(s) 499
MaeI CTAG 1 cut(s) 374
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 126
MalI GATC 2 cut(s) 38, 255
MboI GATC 2 cut(s) 36, 253
MboII GAAGA 5 cut(s) 38, 161, 164, 319, 497
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 2 cut(s) 575, 604
MlyI GAGTC 3 cut(s) 130, 568, 592
MnlI CCTC 4 cut(s) 216, 291, 503, 600
MseI TTAA 2 cut(s) 12, 438
MslI CAYNNNNRTG 1 cut(s) 382
MspCI CTTAAG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 233, 374
NdeII GATC 2 cut(s) 36, 253
NlaIII CATG 3 cut(s) 92, 329, 566
NlaIV GGNNCC 2 cut(s) 255, 463
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 126
NotI GCGGCCGC 1 cut(s) 270
NspI RCATGY 1 cut(s) 92
PfeI GAWTC 1 cut(s) 475
PkrI GCNGC 2 cut(s) 271, 274
PleI GAGTC 3 cut(s) 130, 567, 592
PpsI GAGTC 3 cut(s) 130, 567, 592
PspN4I GGNNCC 2 cut(s) 255, 463
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 2 cut(s) 44, 414
RsaNI GTAC 2 cut(s) 43, 413
RseI CAYNNNNRTG 1 cut(s) 382
SaqAI TTAA 2 cut(s) 12, 438
SatI GCNGC 2 cut(s) 270, 273
Sau3AI GATC 2 cut(s) 36, 253
SchI GAGTC 3 cut(s) 130, 568, 592
SduI GDGCHC 1 cut(s) 88
SetI ASST 6 cut(s) 12, 21, 112, 411, 495, 535
SfaNI GCATC 1 cut(s) 499
SmiMI CAYNNNNRTG 1 cut(s) 382
SmlI CTYRAG 2 cut(s) 11, 479
SmoI CTYRAG 2 cut(s) 11, 479
Sse9I AATT 2 cut(s) 575, 604
SsiI CCGC 2 cut(s) 269, 273
SspMI CTAG 1 cut(s) 374
StyI CCWWGG 1 cut(s) 397
TaiI ACGT 1 cut(s) 411
TaqI TCGA 1 cut(s) 522
TasI AATT 2 cut(s) 575, 604
TatI WGTACW 1 cut(s) 42
TauI GCSGC 2 cut(s) 272, 275
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 2 cut(s) 12, 438
Tru9I TTAA 2 cut(s) 12, 438
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 126
TspDTI ATGAA 2 cut(s) 86, 258
TspRI CASTG 1 cut(s) 295
Vha464I CTTAAG 1 cut(s) 11
XapI RAATTY 1 cut(s) 575
XceI RCATGY 1 cut(s) 92
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.