RchiOBHm_Chr4g0387821

Perakine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000149
Physical Location & Seq
Reverse (-)
2978511 .. 2980323
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36110

Sequence Viewer

Length: 666 bp
ATGTCGACTATATTGATTTGTACTATCAGCACCGTGTCGATGTTTCAGTGCCAATTGAGGATACGGAAGATTGAGGAGCTTAAGAAGCTAGTGAATGAAGGAAAAATAAGATACATTGGCCTTTCAGAAGCTAGTATAGACACAATAATGAGAGCTCATGCTGTTCATCCCATTACTGCAGTGCAAATGGAGTATTCTCGTTGGACTCGTGAAATCGAAAATGAGATAATTCCACTTTGCAGGAAACTTGGAATTGGGATAGTGTCATATAGTCCACTTGGTTGTGGCTTCTTCGGTGGGAAGGCAATTTTAGAGAGCTTGCCTGCCGAAAGTTTTCTATTCATCCAAGGTTCAATGGTGAGAATTTGGAGAACAACAAACTTTTCTATAACAAACTTGCCAACCTTGCCACAAAAACATTCATGCACTGCTCCTCAGCTAGCTCTGGCATGGCTTCTCCATCAGGGCAATGACATAGTTCCAATCCCAGGAACTACTAAAGTTAAGAACCTTTGTATCAATATTGGAGCATTGAATGTGAAGCTTCCGAAAGAGGATTTGACTGAAATTTGTGATGCTGTTCCCATTAATGAAGTTGAAGGCGACCGAGAATTTGAAGTTCTGTCAAAATTCATCTGGAATAATGCAAATACCCCATCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

221

Amino Acids

24.7

Weight (kDa)

8.15

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 24 - 190 2.7e-32 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AcsI RAATTY 4 cut(s) 363, 567, 611, 629
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 488
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 4 cut(s) 354, 535, 599, 617
AjnI CCWGG 1 cut(s) 487
AluBI AGCT 8 cut(s) 79, 88, 131, 155, 318, 439, 443, 544
AluI AGCT 8 cut(s) 79, 88, 131, 155, 318, 439, 443, 544
Alw21I GWGCWC 1 cut(s) 157
AoxI GGCC 1 cut(s) 118
ApoI RAATTY 4 cut(s) 363, 567, 611, 629
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
AseI ATTAAT 1 cut(s) 588
Asp700I GAANNNNTTC 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 370
AsuNHI GCTAGC 1 cut(s) 439
BaeI ACNNNNGTAYC 2 cut(s) 499, 532
BanII GRGCYC 1 cut(s) 157
BauI CACGAG 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 157
BbvCI CCTCAGC 1 cut(s) 435
BccI CCATC 2 cut(s) 468, 664
BciT130I CCWGG 1 cut(s) 489
BciVI GTATCC 1 cut(s) 54
BfaI CTAG 3 cut(s) 89, 132, 440
BfmI CTRYAG 1 cut(s) 177
BfrI CTTAAG 1 cut(s) 80
BfuI GTATCC 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 489
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 1 cut(s) 565
BmtI GCTAGC 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 435
BsaJI CCNNGG 2 cut(s) 346, 487
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse3DI GCAATG 1 cut(s) 475
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 2 cut(s) 346, 487
BseGI GGATG 2 cut(s) 166, 342
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 1 cut(s) 475
BseMII CTCAG 1 cut(s) 449
BseRI GAGGAG 2 cut(s) 89, 423
Bsh1285I CGRYCG 1 cut(s) 607
BshFI GGCC 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 488
BsnI GGCC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 157
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 448
BspMAI CTGCAG 1 cut(s) 181
BspOI GCTAGC 1 cut(s) 443
BspTI CTTAAG 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 475
BssECI CCNNGG 2 cut(s) 346, 487
BssSI CACGAG 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 346
Bst2BI CACGAG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 1 cut(s) 34
BstAFI CTTAAG 1 cut(s) 80
BstC8I GCNNGC 3 cut(s) 320, 324, 441
BstDEI CTNAG 1 cut(s) 435
BstF5I GGATG 2 cut(s) 166, 342
BstMCI CGRYCG 1 cut(s) 607
BstMWI GCNNNNNNNGC 2 cut(s) 85, 406
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 487
BstSFI CTRYAG 1 cut(s) 177
BsuI GTATCC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 166, 342
BtsI GCAGTG 2 cut(s) 186, 426
BtsIMutI CAGTG 3 cut(s) 53, 186, 426
Cac8I GCNNGC 3 cut(s) 320, 324, 441
Csp6I GTAC 1 cut(s) 21
CviAII CATG 3 cut(s) 158, 423, 450
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 3 cut(s) 161, 426, 453
FaiI YATR 9 cut(s) 11, 137, 159, 268, 270, 389, 424, 451, 476
FatI CATG 3 cut(s) 157, 422, 449
FblI GTMKAC 1 cut(s) 5
FokI GGATG 2 cut(s) 153, 329
FriOI GRGCYC 1 cut(s) 157
FspBI CTAG 3 cut(s) 89, 132, 440
HaeIII GGCC 1 cut(s) 120
Hin1II CATG 3 cut(s) 161, 426, 453
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 1 cut(s) 205
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 2 cut(s) 6, 275
Hpy188I TCNGA 2 cut(s) 127, 549
Hpy188III TCNNGA 2 cut(s) 209, 637
Hpy8I GTNNAC 2 cut(s) 6, 275
HpyAV CCTTC 3 cut(s) 92, 295, 593
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 5 cut(s) 179, 184, 240, 426, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 406
HpyF3I CTNAG 1 cut(s) 435
Hsp92II CATG 3 cut(s) 161, 426, 453
LmnI GCTCC 3 cut(s) 76, 436, 527
LpnPI CCDG 7 cut(s) 226, 336, 431, 449, 474, 501, 622
LweI GCATC 1 cut(s) 565
MaeI CTAG 3 cut(s) 89, 132, 440
MboII GAAGA 2 cut(s) 79, 283
MfeI CAATTG 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 8 cut(s) 53, 228, 252, 306, 363, 567, 611, 629
MlyI GAGTC 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 4 cut(s) 51, 67, 444, 547
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 3 cut(s) 81, 504, 588
MslI CAYNNNNRTG 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 489
MunI CAATTG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 489
MwoI GCNNNNNNNGC 2 cut(s) 85, 406
NheI GCTAGC 1 cut(s) 439
NlaIII CATG 3 cut(s) 161, 426, 453
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 333
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PshBI ATTAAT 1 cut(s) 588
Psp124BI GAGCTC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PstI CTGCAG 1 cut(s) 181
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 146
SacI GAGCTC 1 cut(s) 157
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 81, 504, 588
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 489
SduI GDGCHC 1 cut(s) 157
SfaNI GCATC 1 cut(s) 565
SfcI CTRYAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 8 cut(s) 53, 228, 252, 306, 363, 567, 611, 629
SspI AATATT 1 cut(s) 523
SspMI CTAG 3 cut(s) 89, 132, 440
SstI GAGCTC 1 cut(s) 157
StyD4I CCNGG 1 cut(s) 487
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 3 cut(s) 5, 38, 216
TaqII GACCGA 1 cut(s) 621
TasI AATT 8 cut(s) 53, 228, 252, 306, 363, 567, 611, 629
TatI WGTACW 1 cut(s) 20
Tru1I TTAA 3 cut(s) 81, 504, 588
Tru9I TTAA 3 cut(s) 81, 504, 588
TscAI CASTG 3 cut(s) 53, 186, 433
TspDTI ATGAA 6 cut(s) 111, 155, 331, 411, 606, 622
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 3 cut(s) 53, 186, 433
Vha464I CTTAAG 1 cut(s) 80
VspI ATTAAT 1 cut(s) 588
XapI RAATTY 4 cut(s) 363, 567, 611, 629
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 3 cut(s) 89, 132, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.