Rmu_sc0002575.1_g000022

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002575.1
OG0000149
Physical Location & Seq
Reverse (-)
100453 .. 102413
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002575.1_g000022.1.cds

Sequence Viewer

Length: 786 bp
atgggactttatggaatctataatgtgccagtttctgaagagtttggcatatcaatgatcaagtacgcatttgacagaggaataacattcttcgatacatcagatgtttatggaccacatgctaatgaagttttgatcggaaagcaccggattaatacatcagtccccatagaggatactatggaggaactaaagaagctggtgaaagaggggaaaataaagtacattagattatctgaagctagcccagacacaataagaagggcacatgcagttcatcctatcgctgcagtccaaatggagtggtctctttggactcgcgacattgaggaagaaatcgtcccactttgcagggaacttggaatcgggatagtgccatacagccctcttggtcaaggattttttggtggcagggcagctgtggaagctataccatcaagtagtattgtgggatggcttcctcgctttcaaggagacaacttggagaaaaataaagacatctatgctagaacacaaaagttggctgaaaaacatgggtgctcccctgcacaactagcccttgcttgggttcttagtcaaggtgatggtgttgtacctatccctggaacaactaagataaacaatcttgatgaaaatatcggttccttgggagtgaaactaactgaagaagatatgaaagagatttccattatgatacctaccaatatcatggcagggaataatgcaccgcatattttcatccgctgctcatggaaatttgcaaacacaccagcagcaaaaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

261

Amino Acids

28.85

Weight (kDa)

5.91

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 321
AciI CCGC 2 cut(s) 728, 742
AcsI RAATTY 1 cut(s) 755
AcuI CTGAAG 3 cut(s) 57, 258, 684
AfaI GTAC 3 cut(s) 65, 224, 594
AfiI CCNNNNNNNGG 4 cut(s) 172, 564, 565, 602
AgsI TTSAA 1 cut(s) 470
AjnI CCWGG 1 cut(s) 601
AluBI AGCT 4 cut(s) 199, 242, 419, 428
AluI AGCT 4 cut(s) 199, 242, 419, 428
Alw21I GWGCWC 1 cut(s) 542
Alw26I GTCTC 2 cut(s) 312, 468
AlwNI CAGNNNCTG 1 cut(s) 35
ApeKI GCWGC 4 cut(s) 287, 416, 744, 773
ApoI RAATTY 1 cut(s) 755
AseI ATTAAT 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 214, 593
AsuNHI GCTAGC 1 cut(s) 242
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 542
BbvI GCAGC 3 cut(s) 274, 428, 731
BccI CCATC 3 cut(s) 442, 447, 578
BciT130I CCWGG 1 cut(s) 603
BciVI GTATCC 1 cut(s) 169
BclI TGATCA 1 cut(s) 57
BcoDI GTCTC 2 cut(s) 312, 468
BfaI CTAG 3 cut(s) 243, 507, 554
BfmI CTRYAG 1 cut(s) 288
BfuI GTATCC 1 cut(s) 169
BisI GCNGC 4 cut(s) 288, 417, 745, 774
BlsI GCNGC 4 cut(s) 289, 418, 746, 775
Bme1390I CCNGG 1 cut(s) 603
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 643
BmrFI CCNGG 1 cut(s) 603
BmtI GCTAGC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 601, 645
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 4 cut(s) 172, 564, 565, 602
Bse1I ACTGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 2 cut(s) 601, 645
BseGI GGATG 3 cut(s) 277, 458, 738
BseLI CCNNNNNNNGG 4 cut(s) 172, 564, 565, 602
BseNI ACTGG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 3 cut(s) 274, 428, 731
BsgI GTGCAG 1 cut(s) 531
Bsh1236I CGCG 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 542
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 3 cut(s) 18, 149, 326
BslI CCNNNNNNNGG 4 cut(s) 172, 564, 565, 602
BsmAI GTCTC 2 cut(s) 312, 468
BsmFI GGGAC 3 cut(s) 18, 149, 326
Bso31I GGTCTC 1 cut(s) 312
Bsp1286I GDGCHC 2 cut(s) 268, 542
Bsp143I GATC 2 cut(s) 57, 135
Bsp68I TCGCGA 1 cut(s) 321
BspACI CCGC 2 cut(s) 728, 742
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 643
BspMAI CTGCAG 1 cut(s) 292
BspOI GCTAGC 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 312
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 2 cut(s) 601, 645
BssMI GATC 2 cut(s) 57, 135
BssT1I CCWWGG 1 cut(s) 645
Bst2UI CCWGG 1 cut(s) 603
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 572, 612
BstF5I GGATG 3 cut(s) 277, 458, 738
BstFNI CGCG 1 cut(s) 321
BstKTI GATC 2 cut(s) 60, 138
BstMAI GTCTC 2 cut(s) 312, 468
BstMBI GATC 2 cut(s) 57, 135
BstMWI GCNNNNNNNGC 2 cut(s) 425, 554
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 2 cut(s) 122, 272
BstSCI CCNGG 1 cut(s) 601
BstSFI CTRYAG 1 cut(s) 288
BstSLI GKGCMC 1 cut(s) 268
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 3 cut(s) 274, 428, 731
BstXI CCANNNNNNTGG 1 cut(s) 709
BsuI GTATCC 1 cut(s) 169
BtsCI GGATG 3 cut(s) 277, 458, 738
BtuMI TCGCGA 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 244
CaiI CAGNNNCTG 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 3 cut(s) 64, 223, 593
CspCI CAANNNNNGTGG 2 cut(s) 284, 319
CviAII CATG 5 cut(s) 119, 269, 533, 709, 750
CviJI RGCY 9 cut(s) 199, 242, 246, 384, 419, 428, 457, 524, 557
CviKI_1 RGCY 9 cut(s) 199, 242, 246, 384, 419, 428, 457, 524, 557
CviQI GTAC 3 cut(s) 64, 223, 593
DdeI CTNAG 2 cut(s) 572, 612
DpnI GATC 2 cut(s) 59, 137
DpnII GATC 2 cut(s) 57, 135
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 645
Eco31I GGTCTC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 3 cut(s) 57, 258, 684
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 5 cut(s) 122, 272, 536, 712, 753
FaqI GGGAC 3 cut(s) 18, 149, 326
FatI CATG 5 cut(s) 118, 268, 532, 708, 749
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 4 cut(s) 288, 417, 745, 774
FokI GGATG 3 cut(s) 264, 465, 725
Fsp4HI GCNGC 4 cut(s) 288, 417, 745, 774
FspBI CTAG 3 cut(s) 243, 507, 554
GluI GCNGC 4 cut(s) 288, 417, 745, 774
HapII CCGG 1 cut(s) 148
Hin1II CATG 5 cut(s) 122, 272, 536, 712, 753
HinfI GANTC 3 cut(s) 15, 316, 363
HpaII CCGG 1 cut(s) 148
HphI GGTGA 2 cut(s) 214, 593
Hpy188I TCNGA 4 cut(s) 37, 103, 140, 238
Hpy188III TCNNGA 3 cut(s) 320, 367, 626
HpyAV CCTTC 1 cut(s) 255
HpyCH4V TGCA 6 cut(s) 272, 290, 351, 548, 725, 761
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 554
HpyF3I CTNAG 2 cut(s) 572, 612
Hsp92II CATG 5 cut(s) 122, 272, 536, 712, 753
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 2 cut(s) 57, 135
LmnI GCTCC 1 cut(s) 545
Lsp1109I GCAGC 3 cut(s) 274, 428, 731
MaeI CTAG 3 cut(s) 243, 507, 554
MalI GATC 2 cut(s) 59, 137
MboI GATC 2 cut(s) 57, 135
MboII GAAGA 5 cut(s) 50, 82, 344, 677, 680
MhlI GDGCHC 2 cut(s) 268, 542
MluCI AATT 2 cut(s) 755, 781
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 7 cut(s) 71, 166, 178, 202, 322, 396, 471
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 2 cut(s) 53, 123
MspA1I CMGCKG 2 cut(s) 419, 744
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 603
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 425, 554
NdeII GATC 2 cut(s) 57, 135
NheI GCTAGC 1 cut(s) 242
NlaIII CATG 5 cut(s) 122, 272, 536, 712, 753
NlaIV GGNNCC 1 cut(s) 643
NruI TCGCGA 1 cut(s) 321
NspI RCATGY 2 cut(s) 122, 272
PfeI GAWTC 2 cut(s) 15, 363
PkrI GCNGC 4 cut(s) 289, 418, 746, 775
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PshBI ATTAAT 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 1 cut(s) 643
PspPI GGNCC 1 cut(s) 113
PstI CTGCAG 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 419
RruI TCGCGA 1 cut(s) 321
RsaI GTAC 3 cut(s) 65, 224, 594
RsaNI GTAC 3 cut(s) 64, 223, 593
RseI CAYNNNNRTG 2 cut(s) 53, 123
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 4 cut(s) 288, 417, 745, 774
Sau3AI GATC 2 cut(s) 57, 135
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 1 cut(s) 603
SduI GDGCHC 2 cut(s) 268, 542
SetI ASST 7 cut(s) 201, 244, 421, 430, 583, 598, 700
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 2 cut(s) 53, 123
Sse9I AATT 2 cut(s) 755, 781
SsiI CCGC 2 cut(s) 728, 742
SspMI CTAG 3 cut(s) 243, 507, 554
StyD4I CCNGG 1 cut(s) 601
StyI CCWWGG 1 cut(s) 645
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 755, 781
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 2 cut(s) 15, 363
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 4 cut(s) 287, 416, 744, 773
TspDTI ATGAA 5 cut(s) 141, 266, 645, 689, 727
VpaK11BI GGWCC 1 cut(s) 113
VspI ATTAAT 1 cut(s) 153
XapI RAATTY 1 cut(s) 755
XceI RCATGY 2 cut(s) 122, 272
XspI CTAG 3 cut(s) 243, 507, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.