Rh3CG034500

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000149
Physical Location & Seq
Forward (+)
2378628 .. 2381034
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG034500.1

Sequence Viewer

Length: 789 bp
ATGGTTGAGGATGAGGGAGTCCAAATTCCGAGAGCGCAACTGGGAAGTCAGGGATTTGAGGTTTCCAAGCTGGGATTAGGGTGTAGATGGCTTACTGGGAAATTCAATGAAGCTCCAGTGGCTGAAGAGCTTGCATTATCAATCATCAAGCACGCATTCGATAAAGGAATAACATTCTTTGATACAGCAGATATCTATGGACCACATACCAATGAAATTTTGATTGGAAAGGCATTGAGGCAGTTGCCTAGGGATAAAGTTCAATTGGCTACAAAGTTTGGCGTCGTAAGAATTGAGCCTGATGAACGAAGGATAATTAATGGGACTCCTGAGTATGTCCGCTCCTGCTGCGAGGCTAGCCTGAAGCGTCTTGATGTTGAGTACATTGATCTTTATTATCAGCACCGCGTAGACATATCAATCCCCATAGAGGACACTTCCCTCTATGTATTGCGTTTGTTGGAACATAGGGAACTTGGAATTGGGATAGTGCCATACCACCCCCTTGGTCGTGGGTTTTTAGCTCGAGATGGGCTACCTGAAGATCGTTTCCTGCGTTCAACTCCTCGATGTCAAGGAGACAACCTCAAGGAAAATAAGATCCTTCAGGTTAAAGTACAGAACTTGGCTGAAAAATATGAATGCACCCCTGCACAACTCGCGCTTGCGTGGCTCATTAATCAACCCGATGCCTGTTGTGTGCCTGGTGTTGTACCTATATTTGTTAAAAGTTCAACATACTCAACTCTCCTTCTGTTTTTGCTGGCACAACCAAAACTAAACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

262

Amino Acids

29.52

Weight (kDa)

6.24

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 24 - 147 6.2e-28 Aldo/keto reductase family
Aldo_ket_red PF00248 153 - 247 6e-09 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 342
AccI GTMKAC 1 cut(s) 411
AccII CGCG 2 cut(s) 408, 662
AciI CCGC 2 cut(s) 340, 406
AclWI GGATC 1 cut(s) 595
AcsI RAATTY 3 cut(s) 24, 101, 216
AcuI CTGAAG 4 cut(s) 144, 383, 561, 590
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 3 cut(s) 383, 618, 714
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 4 cut(s) 106, 263, 561, 735
AjnI CCWGG 1 cut(s) 703
AjuI GAANNNNNNNTTGG 4 cut(s) 207, 239, 465, 497
AluBI AGCT 4 cut(s) 70, 113, 130, 524
AluI AGCT 4 cut(s) 70, 113, 130, 524
Alw26I GTCTC 1 cut(s) 573
AlwI GGATC 1 cut(s) 595
AlwNI CAGNNNCTG 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 525
ApeKI GCWGC 1 cut(s) 348
ApoI RAATTY 3 cut(s) 24, 101, 216
AseI ATTAAT 2 cut(s) 318, 678
AspA2I CCTAGG 1 cut(s) 248
AspLEI GCGC 2 cut(s) 37, 664
AspS9I GGNCC 1 cut(s) 200
AsuNHI GCTAGC 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 525
AvaII GGWCC 1 cut(s) 200
AvrII CCTAGG 1 cut(s) 248
BbvI GCAGC 1 cut(s) 335
BccI CCATC 2 cut(s) 81, 524
BciT130I CCWGG 1 cut(s) 705
BcoDI GTCTC 1 cut(s) 573
BfaI CTAG 2 cut(s) 249, 357
BisI GCNGC 1 cut(s) 349
BlnI CCTAGG 1 cut(s) 248
BlsI GCNGC 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 705
Bme18I GGWCC 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 525
BmgT120I GGNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 705
BmrI ACTGGG 2 cut(s) 50, 105
BmsI GCATC 1 cut(s) 679
BmtI GCTAGC 1 cut(s) 360
BmuI ACTGGG 2 cut(s) 50, 105
BplI GAGNNNNNCTC 2 cut(s) 570, 602
BpmI CTGGAG 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 248, 505
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 3 cut(s) 45, 100, 116
BseBI CCWGG 1 cut(s) 705
BseDI CCNNGG 2 cut(s) 248, 505
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 3 cut(s) 45, 100, 116
BseRI GAGGAG 1 cut(s) 555
BseXI GCAGC 1 cut(s) 335
BseYI CCCAGC 1 cut(s) 70
BsgI GTGCAG 1 cut(s) 636
Bsh1236I CGCG 2 cut(s) 408, 662
BsiHKCI CYCGRG 1 cut(s) 525
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 1 cut(s) 573
BsmFI GGGAC 1 cut(s) 337
BsmI GAATGC 2 cut(s) 155, 647
BsoBI CYCGRG 1 cut(s) 525
Bsp143I GATC 3 cut(s) 388, 544, 600
BspACI CCGC 2 cut(s) 340, 406
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 2 cut(s) 408, 662
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 1 cut(s) 595
BspQI GCTCTTC 1 cut(s) 120
BsrBI CCGCTC 1 cut(s) 342
BsrI ACTGG 3 cut(s) 45, 100, 116
BssECI CCNNGG 2 cut(s) 248, 505
BssMI GATC 3 cut(s) 388, 544, 600
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 248, 505
Bst2UI CCWGG 1 cut(s) 705
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 282
BstC8I GCNNGC 5 cut(s) 132, 153, 358, 666, 765
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 16
BstFNI CGCG 2 cut(s) 408, 662
BstHHI GCGC 2 cut(s) 37, 664
BstKTI GATC 3 cut(s) 391, 547, 603
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 3 cut(s) 388, 544, 600
BstMWI GCNNNNNNNGC 5 cut(s) 119, 348, 357, 659, 670
BstNI CCWGG 1 cut(s) 705
BstSCI CCNGG 1 cut(s) 703
BstUI CGCG 2 cut(s) 408, 662
BstV1I GCAGC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 600
BstXI CCANNNNNNTGG 1 cut(s) 506
BstYI RGATCY 1 cut(s) 600
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 5 cut(s) 132, 153, 358, 666, 765
CaiI CAGNNNCTG 1 cut(s) 122
CfoI GCGC 2 cut(s) 37, 664
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 2 cut(s) 271, 356
Csp6I GTAC 3 cut(s) 382, 617, 713
CviQI GTAC 3 cut(s) 382, 617, 713
DdeI CTNAG 1 cut(s) 330
DpnI GATC 3 cut(s) 390, 546, 602
DpnII GATC 3 cut(s) 388, 544, 600
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 248, 505
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 4 cut(s) 144, 383, 561, 590
Eco88I CYCGRG 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 703
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 248, 505
ErhI CCWWGG 2 cut(s) 248, 505
FaqI GGGAC 1 cut(s) 337
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 1 cut(s) 349
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 349
FspBI CTAG 2 cut(s) 249, 357
GlaI GCGC 2 cut(s) 36, 663
GluI GCNGC 1 cut(s) 349
GsaI CCCAGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 99
HgaI GACGC 2 cut(s) 271, 356
HhaI GCGC 2 cut(s) 37, 664
Hin1I GRCGYC 1 cut(s) 282
Hin6I GCGC 2 cut(s) 35, 662
HinP1I GCGC 2 cut(s) 35, 662
HinfI GANTC 2 cut(s) 18, 325
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 3 cut(s) 329, 371, 527
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 3 cut(s) 303, 614, 761
HpyCH4V TGCA 3 cut(s) 134, 645, 653
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 348, 357, 659, 670
HpyF3I CTNAG 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 282
HspAI GCGC 2 cut(s) 35, 662
Kzo9I GATC 3 cut(s) 388, 544, 600
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 118, 347
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 1 cut(s) 679
MaeI CTAG 2 cut(s) 249, 357
MalI GATC 3 cut(s) 390, 546, 602
MbiI CCGCTC 1 cut(s) 342
MboI GATC 3 cut(s) 388, 544, 600
MboII GAAGA 2 cut(s) 137, 554
MfeI CAATTG 1 cut(s) 263
MflI RGATCY 1 cut(s) 600
MluCI AATT 7 cut(s) 24, 101, 216, 263, 291, 315, 480
MlyI GAGTC 2 cut(s) 27, 319
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 8 cut(s) 7, 52, 231, 346, 424, 452, 576, 596
MseI TTAA 4 cut(s) 318, 612, 678, 726
MslI CAYNNNNRTG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 705
MunI CAATTG 1 cut(s) 263
Mva1269I GAATGC 2 cut(s) 155, 647
MvaI CCWGG 1 cut(s) 705
MvnI CGCG 2 cut(s) 408, 662
MwoI GCNNNNNNNGC 5 cut(s) 119, 348, 357, 659, 670
NdeII GATC 3 cut(s) 388, 544, 600
NheI GCTAGC 1 cut(s) 356
PaeR7I CTCGAG 1 cut(s) 525
PciSI GCTCTTC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 553
PctI GAATGC 2 cut(s) 155, 647
PkrI GCNGC 1 cut(s) 350
PleI GAGTC 2 cut(s) 26, 319
PpsI GAGTC 2 cut(s) 26, 319
PshBI ATTAAT 2 cut(s) 318, 678
Psp6I CCWGG 1 cut(s) 703
PspFI CCCAGC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 703
PspPI GGNCC 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 600
RsaI GTAC 3 cut(s) 383, 618, 714
RsaNI GTAC 3 cut(s) 382, 617, 713
RseI CAYNNNNRTG 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 4 cut(s) 318, 612, 678, 726
SatI GCNGC 1 cut(s) 349
Sau3AI GATC 3 cut(s) 388, 544, 600
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 2 cut(s) 27, 319
ScrFI CCNGG 1 cut(s) 705
SetI ASST 9 cut(s) 63, 72, 115, 132, 526, 541, 588, 612, 718
SfaNI GCATC 1 cut(s) 679
Sfr274I CTCGAG 1 cut(s) 525
SinI GGWCC 1 cut(s) 200
SlaI CTCGAG 1 cut(s) 525
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 2 cut(s) 525, 587
SmoI CTYRAG 2 cut(s) 525, 587
Sse9I AATT 7 cut(s) 24, 101, 216, 263, 291, 315, 480
SsiI CCGC 2 cut(s) 340, 406
SspMI CTAG 2 cut(s) 249, 357
StyD4I CCNGG 1 cut(s) 703
StyI CCWWGG 2 cut(s) 248, 505
TaqI TCGA 3 cut(s) 159, 526, 568
TasI AATT 7 cut(s) 24, 101, 216, 263, 291, 315, 480
TatI WGTACW 2 cut(s) 381, 616
Tru1I TTAA 4 cut(s) 318, 612, 678, 726
Tru9I TTAA 4 cut(s) 318, 612, 678, 726
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 348
TspDTI ATGAA 4 cut(s) 123, 228, 318, 654
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 200
VspI ATTAAT 2 cut(s) 318, 678
XapI RAATTY 3 cut(s) 24, 101, 216
XhoI CTCGAG 1 cut(s) 525
XmaJI CCTAGG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 411
XspI CTAG 2 cut(s) 249, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.