FvH4_6g03052

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000149
Physical Location & Seq
Forward (+)
1712884 .. 1715146
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03052.t1

Sequence Viewer

Length: 930 bp
ATGGCTGAGGAGAAGGGAATACAGATTCCGAGAGTTAAACTTGGAACTCAGGGATTGGAGGTCTCAAAAATGGGGTTTGGATGCATGGGCCTAACTGGAGTCTACAACTCTCCTGTTTCTGATGAGGATGGAATCTCAATAATAGTAGCTGCTTTCAATAAAGGAATCACTTTCTTTGACACAGCTGATGTATATGGACCTCATACAAATGAACTTCTTGTTGGGAAGGCATTGAAGCAGTTGCCAAGAGAAAAAGTTCAATTGGCTACAAAGTTTGGTATTGCTGGAATAATGGATCCTCCTAGCATCAAAATCACTGGTACTCCGGAGTATGTCAGGTCATGCTGTGAGGCTAGCTTGAAGCGTCTTGATGTGGACTACATTGATCTGTACTATCAACATCGGGTGGACACTACGGTCCCTATAGAGGAAACAATGGGCGAGCTGAAGAAACTTGTGGAAGAAGGAAAGATAAAGTACATTGGTTTATCTGAAGCTAGTCCGGACACAATAAGAAGGGCGCATGCAGTTCATCCCATCACGGCTCTACAAATGGAGTGGTCACTCTGGACTCGTGATATTGAAGAAGAGATTGTTCCACTTTGCAGGGAGCTTGGCATTGGTATAGTTCCATATAGTCCTCTTGGTCGTGGGTTTTTTGGAGGCAAAGCAGTTGCAGAAAGTGTGCCTTCAAATAGTTTTGTGTCATCCCATCCTCGGTTTGTAGGAGAGAACTTGGAGAAGAACAAGACTATTTACAATCAAATGGAAAGCCTTGCTCAAAAGCACCAATGCCTTACCTCTCAACTAGCATTAGCATGGGTTCTTCACCAAGGAGATGATGTTGTACCTATCCCAGGAACAACAAAGATAAAGAACCTCGACGCAAACATTGGCTCCTTAAAGGTGAAACTTGGGAAGAAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

310

Amino Acids

33.94

Weight (kDa)

6.41

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 307 8.8e-75 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 416
AccI GTMKAC 1 cut(s) 102
AccIII TCCGGA 2 cut(s) 325, 502
AclWI GGATC 2 cut(s) 290, 303
AcuI CTGAAG 2 cut(s) 467, 513
AfaI GTAC 4 cut(s) 322, 392, 479, 849
AfiI CCNNNNNNNGG 3 cut(s) 427, 717, 857
AgsI TTSAA 6 cut(s) 157, 235, 260, 361, 584, 693
AjnI CCWGG 1 cut(s) 856
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 6 cut(s) 149, 185, 357, 445, 497, 613
AluI AGCT 6 cut(s) 149, 185, 357, 445, 497, 613
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 2 cut(s) 290, 303
Aor13HI TCCGGA 2 cut(s) 325, 502
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 149
Asp700I GAANNNNTTC 1 cut(s) 255
AspLEI GCGC 1 cut(s) 523
AspS9I GGNCC 3 cut(s) 88, 197, 418
AsuHPI GGTGA 2 cut(s) 821, 919
AsuNHI GCTAGC 1 cut(s) 353
AvaII GGWCC 2 cut(s) 197, 418
BamHI GGATCC 1 cut(s) 295
BauI CACGAG 1 cut(s) 573
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 1 cut(s) 136
BccI CCATC 3 cut(s) 122, 545, 720
BceAI ACGGC 1 cut(s) 558
BciT130I CCWGG 1 cut(s) 858
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 4 cut(s) 303, 354, 498, 809
BfmI CTRYAG 1 cut(s) 423
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 858
Bme18I GGWCC 2 cut(s) 197, 418
BmgT120I GGNCC 3 cut(s) 88, 197, 418
BmiI GGNNCC 3 cut(s) 297, 420, 898
BmrFI CCNGG 1 cut(s) 858
BmsI GCATC 2 cut(s) 71, 315
BmtI GCTAGC 1 cut(s) 357
BpmI CTGGAG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 3 cut(s) 716, 832, 856
BsaWI WCCGGW 2 cut(s) 325, 502
BsaXI ACNNNNNCTCC 6 cut(s) 307, 337, 828, 858, 881, 911
Bsc4I CCNNNNNNNGG 3 cut(s) 427, 717, 857
Bse1I ACTGG 2 cut(s) 100, 322
BseAI TCCGGA 2 cut(s) 325, 502
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 3 cut(s) 716, 832, 856
BseGI GGATG 5 cut(s) 86, 133, 532, 707, 712
BseLI CCNNNNNNNGG 3 cut(s) 427, 717, 857
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 2 cut(s) 100, 322
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 90
BsiSI CCGG 2 cut(s) 326, 503
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 3 cut(s) 427, 717, 857
BsmAI GTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 1 cut(s) 90
Bso31I GGTCTC 1 cut(s) 67
Bsp13I TCCGGA 2 cut(s) 325, 502
Bsp143I GATC 2 cut(s) 295, 385
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 61
BspEI TCCGGA 2 cut(s) 325, 502
BspLI GGNNCC 3 cut(s) 297, 420, 898
BspOI GCTAGC 1 cut(s) 357
BspPI GGATC 2 cut(s) 290, 303
BspTNI GGTCTC 1 cut(s) 67
BsrI ACTGG 2 cut(s) 100, 322
BssECI CCNNGG 3 cut(s) 716, 832, 856
BssMI GATC 2 cut(s) 295, 385
BssSI CACGAG 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 832
Bst2BI CACGAG 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 582
BstC8I GCNNGC 3 cut(s) 355, 443, 525
BstDEI CTNAG 2 cut(s) 6, 48
BstENI CCTNNNNNAGG 1 cut(s) 855
BstF5I GGATG 5 cut(s) 86, 133, 532, 707, 712
BstHHI GCGC 1 cut(s) 523
BstKTI GATC 2 cut(s) 298, 388
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 2 cut(s) 295, 385
BstNI CCWGG 1 cut(s) 858
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 856
BstSFI CTRYAG 1 cut(s) 423
BstV1I GCAGC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 5 cut(s) 86, 133, 532, 707, 712
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 3 cut(s) 355, 443, 525
CfoI GCGC 1 cut(s) 523
Cfr13I GGNCC 3 cut(s) 88, 197, 418
CseI GACGC 2 cut(s) 353, 893
Csp6I GTAC 4 cut(s) 321, 391, 478, 848
CspCI CAANNNNNGTGG 2 cut(s) 539, 574
CviAII CATG 4 cut(s) 85, 342, 524, 819
CviQI GTAC 4 cut(s) 321, 391, 478, 848
DdeI CTNAG 2 cut(s) 6, 48
DpnI GATC 2 cut(s) 297, 387
DpnII GATC 2 cut(s) 295, 385
DrdI GACNNNNNNGTC 1 cut(s) 416
DseDI GACNNNNNNGTC 1 cut(s) 416
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 832
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 197, 418
Eco57I CTGAAG 2 cut(s) 467, 513
EcoNI CCTNNNNNAGG 1 cut(s) 855
EcoRII CCWGG 1 cut(s) 856
EcoT14I CCWWGG 1 cut(s) 832
EcoT22I ATGCAT 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 832
FaeI CATG 4 cut(s) 88, 345, 527, 822
FalI AAGNNNNNCTT 2 cut(s) 673, 705
FaqI GGGAC 1 cut(s) 404
FatI CATG 4 cut(s) 84, 341, 523, 818
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 5 cut(s) 93, 140, 519, 694, 699
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 4 cut(s) 303, 354, 498, 809
GlaI GCGC 1 cut(s) 522
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 90
HapII CCGG 2 cut(s) 326, 503
HgaI GACGC 2 cut(s) 353, 893
HhaI GCGC 1 cut(s) 523
Hin1II CATG 4 cut(s) 88, 345, 527, 822
Hin6I GCGC 1 cut(s) 521
HinP1I GCGC 1 cut(s) 521
HinfI GANTC 5 cut(s) 25, 99, 132, 165, 571
HpaII CCGG 2 cut(s) 326, 503
HphI GGTGA 2 cut(s) 821, 919
Hpy166II GTNNAC 3 cut(s) 103, 376, 409
Hpy188I TCNGA 3 cut(s) 30, 121, 493
Hpy188III TCNNGA 5 cut(s) 326, 368, 503, 568, 575
Hpy8I GTNNAC 3 cut(s) 103, 376, 409
Hpy99I CGWCG 1 cut(s) 887
HpyAV CCTTC 5 cut(s) 7, 220, 458, 510, 699
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4V TGCA 4 cut(s) 84, 527, 606, 677
HpyF3I CTNAG 2 cut(s) 6, 48
Hsp92II CATG 4 cut(s) 88, 345, 527, 822
HspAI GCGC 1 cut(s) 521
Kpn2I TCCGGA 2 cut(s) 325, 502
Kzo9I GATC 2 cut(s) 295, 385
LmnI GCTCC 2 cut(s) 610, 902
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 2 cut(s) 71, 315
MaeI CTAG 4 cut(s) 303, 354, 498, 809
MaeIII GTNAC 1 cut(s) 561
MalI GATC 2 cut(s) 297, 387
MboI GATC 2 cut(s) 295, 385
MboII GAAGA 6 cut(s) 460, 473, 596, 599, 754, 818
MfeI CAATTG 1 cut(s) 260
MflI RGATCY 1 cut(s) 295
MluCI AATT 1 cut(s) 260
MlyI GAGTC 2 cut(s) 108, 565
Mph1103I ATGCAT 1 cut(s) 86
MroI TCCGGA 2 cut(s) 325, 502
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 36, 902
MslI CAYNNNNRTG 2 cut(s) 207, 817
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 2 cut(s) 326, 503
MspR9I CCNGG 1 cut(s) 858
MunI CAATTG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 858
NdeII GATC 2 cut(s) 295, 385
NheI GCTAGC 1 cut(s) 353
NlaIII CATG 4 cut(s) 88, 345, 527, 822
NlaIV GGNNCC 3 cut(s) 297, 420, 898
NmuCI GTSAC 1 cut(s) 561
NsiI ATGCAT 1 cut(s) 86
NspI RCATGY 1 cut(s) 527
PaeI GCATGC 1 cut(s) 527
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 3 cut(s) 25, 132, 165
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 2 cut(s) 107, 565
PpsI GAGTC 2 cut(s) 107, 565
Psp6I CCWGG 1 cut(s) 856
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 3 cut(s) 297, 420, 898
PspPI GGNCC 3 cut(s) 88, 197, 418
PsuI RGATCY 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 4 cut(s) 322, 392, 479, 849
RsaNI GTAC 4 cut(s) 321, 391, 478, 848
RseI CAYNNNNRTG 2 cut(s) 207, 817
SaqAI TTAA 2 cut(s) 36, 902
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 2 cut(s) 295, 385
Sau96I GGNCC 3 cut(s) 88, 197, 418
SchI GAGTC 2 cut(s) 108, 565
ScrFI CCNGG 1 cut(s) 858
SfaNI GCATC 2 cut(s) 71, 315
SfcI CTRYAG 1 cut(s) 423
SinI GGWCC 2 cut(s) 197, 418
SmiMI CAYNNNNRTG 2 cut(s) 207, 817
SphI GCATGC 1 cut(s) 527
Sse9I AATT 1 cut(s) 260
SspMI CTAG 4 cut(s) 303, 354, 498, 809
StyD4I CCNGG 1 cut(s) 856
StyI CCWWGG 1 cut(s) 832
TaaI ACNGT 1 cut(s) 418
TaqI TCGA 1 cut(s) 882
TasI AATT 1 cut(s) 260
TatI WGTACW 2 cut(s) 390, 477
TfiI GAWTC 3 cut(s) 25, 132, 165
Tru1I TTAA 2 cut(s) 36, 902
Tru9I TTAA 2 cut(s) 36, 902
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 1 cut(s) 561
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 561
TspDTI ATGAA 2 cut(s) 225, 521
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 2 cut(s) 197, 418
XagI CCTNNNNNAGG 1 cut(s) 855
XceI RCATGY 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 4 cut(s) 303, 354, 498, 809
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.