Rh4BG013700

Perakine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000149
Physical Location & Seq
Reverse (-)
1822619 .. 1823285
667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG013700.1

Sequence Viewer

Length: 312 bp
ATGGTGAGAATTTGGAGAACAACAAACTTTTCTATAACAAACTTGCCAACCTTGCCACAAAAACATTCATGCACTGCTCCTCAGCTAGCTCTGGCATGGCTTCTCCATCAGGGCAATGACATAGTTCCAATCCCAGGAACTACTAAAGTTAAGAACCTTTGTATCAATATTGGAGCATTGAATGTGAAGCTTCCGAAAGAGGATTTGACTGAAATTTGTGATGCTGTTCCCATTAATGAAGTTGAAGGCGACCGAGAATTTGAAGTTCTGTCAAAATTCATCTGGAATAATGCAAATACCCCATCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

103

Amino Acids

11.51

Weight (kDa)

6.71

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 15 - 72 2.2e-08 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 9, 213, 257, 275
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 3 cut(s) 181, 245, 263
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 3 cut(s) 85, 89, 190
AluI AGCT 3 cut(s) 85, 89, 190
ApoI RAATTY 4 cut(s) 9, 213, 257, 275
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AseI ATTAAT 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 16
AsuNHI GCTAGC 1 cut(s) 85
BaeI ACNNNNGTAYC 2 cut(s) 145, 178
BbvCI CCTCAGC 1 cut(s) 81
BccI CCATC 2 cut(s) 114, 310
BciT130I CCWGG 1 cut(s) 135
BfaI CTAG 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 211
BmtI GCTAGC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 69
Bsh1285I CGRYCG 1 cut(s) 253
BsiEI CGRYCG 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 94
BspOI GCTAGC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 81
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 87
CviAII CATG 2 cut(s) 69, 96
CviJI RGCY 4 cut(s) 85, 89, 100, 190
CviKI_1 RGCY 4 cut(s) 85, 89, 100, 190
DdeI CTNAG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 133
FaeI CATG 2 cut(s) 72, 99
FaiI YATR 4 cut(s) 35, 70, 97, 122
FatI CATG 2 cut(s) 68, 95
FspBI CTAG 1 cut(s) 86
Hin1II CATG 2 cut(s) 72, 99
HindIII AAGCTT 1 cut(s) 188
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 72, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 2 cut(s) 72, 99
LmnI GCTCC 2 cut(s) 82, 173
LpnPI CCDG 5 cut(s) 77, 95, 120, 147, 268
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 86
MluCI AATT 4 cut(s) 9, 213, 257, 275
MnlI CCTC 2 cut(s) 90, 193
MseI TTAA 2 cut(s) 150, 234
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 52
NheI GCTAGC 1 cut(s) 85
NlaIII CATG 2 cut(s) 72, 99
PshBI ATTAAT 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
SaqAI TTAA 2 cut(s) 150, 234
ScrFI CCNGG 1 cut(s) 135
SetI ASST 5 cut(s) 53, 87, 91, 159, 192
SfaNI GCATC 1 cut(s) 211
Sse9I AATT 4 cut(s) 9, 213, 257, 275
SspI AATATT 1 cut(s) 169
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 133
TaqII GACCGA 1 cut(s) 267
TasI AATT 4 cut(s) 9, 213, 257, 275
Tru1I TTAA 2 cut(s) 150, 234
Tru9I TTAA 2 cut(s) 150, 234
TscAI CASTG 1 cut(s) 79
TspDTI ATGAA 3 cut(s) 57, 252, 268
TspRI CASTG 1 cut(s) 79
VspI ATTAAT 1 cut(s) 234
XapI RAATTY 4 cut(s) 9, 213, 257, 275
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.