Rh3DG035100

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000149
Physical Location & Seq
Forward (+)
2342277 .. 2348501
6225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG035100.1

Sequence Viewer

Length: 276 bp
ATGGCAAATGATTGCAGATTGATGGAGAAATTAGGTTCTAGGTTGATGACAATGGTTTCTGGTGCTTCCATCAAACAGGGATGGCTTCCTCGCTTTCAAGGAGACAACTTGGAGAAAAATAAAGACATCTATGCTAGAACACAAAAGTTGGCTGAAAAACATGGGTGCTCCCCTGCACAACTAGCCCTTGCTTGGGTTCTTAGTCAAGGTGATGGTGTTGTACCTATCCCTGGAACAACTAAGATAAACAATCTTGATGAAAATATCGGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

91

Amino Acids

9.93

Weight (kDa)

8.68

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 32 - 90 7.7e-12 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 3 cut(s) 192, 193, 230
AgsI TTSAA 1 cut(s) 98
AjnI CCWGG 1 cut(s) 229
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 170
BccI CCATC 4 cut(s) 16, 75, 77, 206
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 3 cut(s) 39, 135, 182
Bme1390I CCNGG 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 193, 230
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 3 cut(s) 192, 193, 230
BsgI GTGCAG 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 170
BslI CCNNNNNNNGG 3 cut(s) 192, 193, 230
BsmAI GTCTC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 200, 240, 273
BstF5I GGATG 1 cut(s) 86
BstMAI GTCTC 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 229
BtsCI GGATG 1 cut(s) 86
Csp6I GTAC 1 cut(s) 221
CviAII CATG 1 cut(s) 161
CviJI RGCY 3 cut(s) 85, 152, 185
CviKI_1 RGCY 3 cut(s) 85, 152, 185
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 3 cut(s) 200, 240, 273
EcoRII CCWGG 1 cut(s) 229
FaeI CATG 1 cut(s) 164
FaiI YATR 2 cut(s) 132, 162
FatI CATG 1 cut(s) 160
FokI GGATG 1 cut(s) 93
FspBI CTAG 3 cut(s) 39, 135, 182
Hin1II CATG 1 cut(s) 164
HphI GGTGA 1 cut(s) 221
Hpy188III TCNNGA 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 15, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 3 cut(s) 200, 240, 273
Hsp92II CATG 1 cut(s) 164
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 5 cut(s) 45, 62, 186, 216, 243
MaeI CTAG 3 cut(s) 39, 135, 182
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 29
MnlI CCTC 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 182
NlaIII CATG 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 170
SetI ASST 4 cut(s) 37, 44, 211, 226
Sse9I AATT 1 cut(s) 29
SspMI CTAG 3 cut(s) 39, 135, 182
StyD4I CCNGG 1 cut(s) 229
TasI AATT 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 273
XspI CTAG 3 cut(s) 39, 135, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.