Rh3CG034600

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000149
Physical Location & Seq
Forward (+)
2382637 .. 2384012
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG034600.1

Sequence Viewer

Length: 522 bp
ATGATACCTGCGGTGGGAGGGAATAATGCACTTGATAATTTGATGTGCTGCTCTTGGAAGTTTGCAAGTGCGCCAGAAAAGAGAAGGCAAAATACCATCTTGAATGGTTTACCACCATTTGGGGAGGAAAGAGGAAGAGGAAGAAGAACAAGGATGGCTGAGGATACACTCCAAGTTCCAAGAGTGCAACTGGGAACTGAGGGATTCGAGGTCTCCAAGCTTGGATTTGGGTGTACTGGGTTTACTGGAATCACCAATAGTGCTCCAGTCAGTGAAGAGCTTGCATTATCAATTATCAAGCATGCATTTGATAAAGGAATAACATTCTTTGATACATCAGATATTTGTGGACCACATACTAATGAAGTTTTGGTGGGAAAGGCATTAAAGCAGTTGCCTCGAGATGAAGTTCAGTTGGCCACAAAGTTTGGTATGGTAAGAATTGAGCCTAATCAAGTTATAGTTAATGGCACTCCGGAATATCTCCGGAATATGCCCGCTCCTGTTGTGAAGCTAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

173

Amino Acids

18.9

Weight (kDa)

8.4

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 73 - 163 7.2e-13 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 16
AccB7I CCANNNNNTGG 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 500
AccIII TCCGGA 2 cut(s) 475, 486
AciI CCGC 2 cut(s) 11, 498
AcoI YGGCCR 1 cut(s) 417
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 2 cut(s) 14, 119
AgsI TTSAA 1 cut(s) 103
AluBI AGCT 3 cut(s) 220, 280, 514
AluI AGCT 3 cut(s) 220, 280, 514
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 399
Aor13HI TCCGGA 2 cut(s) 475, 486
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 1 cut(s) 350
BalI TGGCCA 1 cut(s) 419
BarI GAAGNNNNNNTAC 2 cut(s) 76, 108
Bbv12I GWGCWC 1 cut(s) 265
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 35
BccI CCATC 2 cut(s) 104, 148
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciVI GTATCC 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 16
BfuI GTATCC 1 cut(s) 157
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 350
BmrI ACTGGG 2 cut(s) 200, 246
BmuI ACTGGG 2 cut(s) 200, 246
BpmI CTGGAG 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 217
BsaWI WCCGGW 2 cut(s) 475, 486
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 119
Bse1I ACTGG 4 cut(s) 195, 241, 250, 266
BseAI TCCGGA 2 cut(s) 475, 486
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 14, 119
BseMII CTCAG 2 cut(s) 150, 189
BseNI ACTGG 4 cut(s) 195, 241, 250, 266
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 2 cut(s) 476, 487
BslI CCNNNNNNNGG 2 cut(s) 14, 119
BsmAI GTCTC 1 cut(s) 217
BsnI GGCC 1 cut(s) 419
Bso31I GGTCTC 1 cut(s) 217
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 265
Bsp13I TCCGGA 2 cut(s) 475, 486
BspACI CCGC 2 cut(s) 11, 498
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 2 cut(s) 151, 190
BspEI TCCGGA 2 cut(s) 475, 486
BspMI ACCTGC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 270
BspTNI GGTCTC 1 cut(s) 217
BsrBI CCGCTC 1 cut(s) 500
BsrI ACTGG 4 cut(s) 195, 241, 250, 266
Bst6I CTCTTC 2 cut(s) 130, 270
BstC8I GCNNGC 3 cut(s) 282, 303, 498
BstDEI CTNAG 2 cut(s) 159, 198
BstF5I GGATG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 35
BsuI GTATCC 1 cut(s) 157
BsuRI GGCC 1 cut(s) 419
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 277
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 3 cut(s) 282, 303, 498
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 234
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 1 cut(s) 302
CviJI RGCY 6 cut(s) 158, 220, 280, 419, 448, 514
CviKI_1 RGCY 6 cut(s) 158, 220, 280, 419, 448, 514
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 2 cut(s) 159, 198
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 2 cut(s) 130, 270
EarI CTCTTC 2 cut(s) 130, 270
Eco31I GGTCTC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 399
EcoT22I ATGCAT 1 cut(s) 307
FaeI CATG 1 cut(s) 305
FaiI YATR 5 cut(s) 303, 357, 434, 461, 494
FatI CATG 1 cut(s) 301
FauI CCCGC 1 cut(s) 505
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 1 cut(s) 515
GlaI GCGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 49
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 419
HapII CCGG 2 cut(s) 476, 487
HhaI GCGC 1 cut(s) 73
Hin1II CATG 1 cut(s) 305
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 2 cut(s) 204, 249
HpaII CCGG 2 cut(s) 476, 487
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 4 cut(s) 110, 234, 243, 350
Hpy188I TCNGA 2 cut(s) 340, 521
Hpy188III TCNNGA 4 cut(s) 100, 401, 476, 487
Hpy8I GTNNAC 4 cut(s) 110, 234, 243, 350
HpyAV CCTTC 1 cut(s) 78
HpyCH4V TGCA 5 cut(s) 29, 65, 187, 284, 305
HpyF3I CTNAG 2 cut(s) 159, 198
Hsp92II CATG 1 cut(s) 305
HspAI GCGC 1 cut(s) 71
Kpn2I TCCGGA 2 cut(s) 475, 486
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 2 cut(s) 268, 505
LpnPI CCDG 9 cut(s) 21, 87, 176, 222, 231, 279, 489, 500, 516
Lsp1109I GCAGC 1 cut(s) 35
MaeI CTAG 1 cut(s) 515
MbiI CCGCTC 1 cut(s) 500
MboII GAAGA 4 cut(s) 147, 153, 156, 287
MhlI GDGCHC 1 cut(s) 265
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 3 cut(s) 37, 291, 441
MluNI TGGCCA 1 cut(s) 419
MnlI CCTC 8 cut(s) 11, 118, 125, 131, 154, 193, 202, 408
Mox20I TGGCCA 1 cut(s) 419
Mph1103I ATGCAT 1 cut(s) 307
MroI TCCGGA 2 cut(s) 475, 486
MscI TGGCCA 1 cut(s) 419
MseI TTAA 2 cut(s) 386, 465
MslI CAYNNNNRTG 1 cut(s) 360
Msp20I TGGCCA 1 cut(s) 419
MspI CCGG 2 cut(s) 476, 487
NlaIII CATG 1 cut(s) 305
NsiI ATGCAT 1 cut(s) 307
NspI RCATGY 1 cut(s) 305
PaeI GCATGC 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 399
PciSI GCTCTTC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 204, 249
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 350
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
RseI CAYNNNNRTG 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 386, 465
SatI GCNGC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 350
SduI GDGCHC 1 cut(s) 265
SetI ASST 5 cut(s) 10, 213, 222, 282, 516
Sfr274I CTCGAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 350
SlaI CTCGAG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SphI GCATGC 1 cut(s) 305
Sse9I AATT 3 cut(s) 37, 291, 441
SsiI CCGC 2 cut(s) 11, 498
SspMI CTAG 1 cut(s) 515
TaqI TCGA 2 cut(s) 207, 400
TasI AATT 3 cut(s) 37, 291, 441
TatI WGTACW 1 cut(s) 233
TfiI GAWTC 2 cut(s) 204, 249
Tru1I TTAA 2 cut(s) 386, 465
Tru9I TTAA 2 cut(s) 386, 465
TscAI CASTG 1 cut(s) 277
TseI GCWGC 1 cut(s) 48
TspDTI ATGAA 2 cut(s) 378, 420
TspRI CASTG 1 cut(s) 277
Van91I CCANNNNNTGG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 350
XceI RCATGY 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 399
XspI CTAG 1 cut(s) 515
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.